LOCUS       NM_001413474            2201 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 653 (Zfp653), transcript
            variant 1, mRNA.
ACCESSION   NM_001413474 XM_006242635
VERSION     NM_001413474.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Borud,B., Mellgren,G., Lund,J. and Bakke,M.
  TITLE     Cloning and characterization of a novel zinc finger protein that
            modulates the transcriptional activity of nuclear receptors
  JOURNAL   Mol Endocrinol 17 (11), 2303-2319 (2003)
   PUBMED   12920234
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 1, 2022 this sequence version replaced XM_006242635.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.422621.1,
                                           SRR26643293.44264.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               JAXUCZ010000008.1  28880579-28880941   c
            364-407             JAXUCZ010000008.1  28877592-28877635   c
            408-623             JAXUCZ010000008.1  28874999-28875214   c
            624-1235            JAXUCZ010000008.1  28865040-28865651   c
            1236-1437           JAXUCZ010000008.1  28864737-28864938   c
            1438-1549           JAXUCZ010000008.1  28864522-28864633   c
            1550-1664           JAXUCZ010000008.1  28863624-28863738   c
            1665-1764           JAXUCZ010000008.1  28863148-28863247   c
            1765-2201           JAXUCZ010000008.1  28862618-28863054   c
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..2201
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /note="zinc finger protein 653"
                     /db_xref="GeneID:300446"
                     /db_xref="RGD:1308754"
     exon            1..363
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..1942
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger protein 653 isoform 1"
                     /protein_id="NP_001400403.1"
                     /db_xref="GeneID:300446"
                     /db_xref="RGD:1308754"
                     /translation="MAERAPEPGAEAEAGAGGEAAAEEGAAGRKARGRPRLTESDRAR
                     RRLESRKKYDVRRVYLGEAHGPWVDLRRRSGWSDAKLAAYLISLERGQRSGRHGKPWE
                     QVPKKPKRKKRRRRNVNCLKNVVIWYEDHKHRCPYEPHLAELDPTFGLYTTAVWQCEA
                     GHRYFQDLHSPLKPLSDSEPDSDKVGNGLAAGSSDSSSSSSSSDSEEPPETQPAKAPA
                     AAAAVTPSSPTGSSGLITQEGVHIPFDVHHVESLAEQGTPLCQNPAGSGPEALETVVC
                     VPVPMQVGTGPGTLFENMPQEALGEVVASCPVSGMVPGSQVIIIAGPGYDALTAEGIH
                     LNVAAGSGTPSSSLGEEVSCAMMEGVAAYTQTEPEGTQHSTMDTTSIASIETKKDTAP
                     CHPVEKEDLYMLKEEKEDSVAPELAELAATVPENTEAEAEVDGEELDSSEMSAIIYEI
                     PKEPEKRRRSKRSRVMDADGLLEMFHCPYEGCSQVYVALSSFQNHVNLVHRKGKTKVC
                     PHPGCGKKFYLSNHLRRHMIIHSGVREFTCETCGKSFKRKNHLEVHRRTHTGETPLQC
                     EICGYQCRQRASLNWHMKKHTAEVQYNFTCDRCGKRFEKLDSVKFHTLKSHPDHKPA"
     exon            364..407
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     exon            408..623
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     exon            624..1235
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1437
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     exon            1438..1549
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     exon            1550..1664
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..1764
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
     exon            1765..2201
                     /gene="Zfp653"
                     /gene_synonym="RGD1308754"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagactagg cgcgccactt ccggtcgagg ctcctaacaa cgggggaggc cggtaaccag
       61 ggaggggggg atggcggagc gggctccaga gcccggggcg gaggcggagg cgggcgcagg
      121 cggggaggcg gctgcagagg aaggcgcggc aggcagaaag gcgcggggcc ggccgcgact
      181 caccgagtcg gaccgggccc ggaggcggct cgagtcccgg aagaagtacg acgtgcggcg
      241 cgtgtacctg ggagaggcgc acggcccctg ggtggacttg agacgccgta gcggctggag
      301 cgacgccaaa ctcgccgctt acctcatttc gctggagcgt ggccagcgta gcggccgcca
      361 cgggaagccg tgggagcaag tccccaaaaa gccaaagcgg aagaaaaggc ggcggcgcaa
      421 cgtgaactgt ctgaagaacg tggtgatctg gtatgaggac cacaagcacc gctgccccta
      481 tgagcctcac ctggcagagc ttgaccctac cttcggcctt tacaccacgg ccgtgtggca
      541 gtgcgaagct ggacatcgct acttccagga cctacactcc ccactcaagc ccctcagtga
      601 ctcagagcct gacagtgaca aagtgggcaa tggcctggcg gctggcagct ctgactcatc
      661 cagctccagt tccagctctg actcggagga gcctcccgag acccagccag ccaaagcccc
      721 agctgctgct gcagctgtca ccccctccag ccccacaggc agcagtgggc ttatcactca
      781 ggaaggagtt catatcccct ttgacgtcca ccacgtggag agcctggctg agcagggcac
      841 ccctctgtgc caaaaccctg caggcagtgg gcctgaggcc ctggagacgg tggtgtgtgt
      901 gccagttccc atgcaagtgg gcactggccc cggcaccctc tttgagaaca tgccccagga
      961 ggccctgggt gaggtagtgg ccagctgccc agtgtcaggc atggtgcctg gctcccaggt
     1021 gatcatcatt gccggtcctg gctatgatgc cctcacagct gagggcatcc acctcaatgt
     1081 agctgctggc agtggcactc ccagcagcag cctgggtgag gaggtgtcct gtgccatgat
     1141 ggagggtgtg gcagcataca cacagacgga gcccgagggc acccagcaca gcaccatgga
     1201 caccacctcc atagccagca ttgagaccaa gaaagacacg gccccgtgtc accccgtaga
     1261 gaaggaggac ctgtatatgc tcaaagagga gaaagaggat tcagtggccc ctgagctggc
     1321 agagctggca gctacagtgc ctgagaatac agaggcagag gcagaagtgg atggagagga
     1381 attggacagc agtgaaatgt cagccatcat ctacgagatt cccaaggagc ccgagaagag
     1441 acggcggagc aagcggtcac gagtgatgga tgctgatggc ctgctggaga tgttccactg
     1501 tccatacgag ggctgcagcc aggtgtatgt ggctctcagc agcttccaga accacgtcaa
     1561 ccttgtgcac cgaaaaggga agaccaaagt gtgccctcac cccggctgtg gcaagaagtt
     1621 ttatttatcc aaccacctgc gacgccacat gatcatccat tcaggcgtcc gagagttcac
     1681 ctgtgagacc tgcggcaagt ctttcaagag aaagaatcat ctggaggtgc acaggcgcac
     1741 gcacactggg gagacgccct tgcagtgcga gatttgcggg taccagtgtc gacagcgtgc
     1801 ttcgctcaat tggcacatga agaagcacac agcagaggta cagtacaact tcacatgcga
     1861 tcgctgcggg aagcgcttcg agaagctgga cagtgtcaag ttccacacgc tcaaaagcca
     1921 cccggatcac aaacctgcct gacttgccca tgcccgtgga cctcagcctc tatttatttg
     1981 tacttttgga cattatgtcc agacctgtca gagccctaga cagccactgg ggctgcccca
     2041 tccgcaggcc ggaaggagtc atccctgttc ttccctgggc aggtgcccca ctctgcccca
     2101 tcccatccca tccatggagc tggcacatgg gactgcactg ctgaactgag tcaagagcgc
     2161 ggaatgagat taaagtgaaa aaggaattgc cttcccataa a
//
