LOCUS       NM_001080207            2641 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 652 (Zfp652), mRNA.
ACCESSION   NM_001080207 XM_001081321 XM_573180
VERSION     NM_001080207.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2641)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC129097.1.
            
            On or before Jan 15, 2007 this sequence version replaced
            XM_573180.2, XM_001081321.1.
            
            Sequence Note: This sequence has been modified as follows: removed
            40 bp suspected to be vector contamination from the 3' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC129097.1, EV765444.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2641              BC129097.1         1-2641
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..2641
                     /gene="Zfp652"
                     /gene_synonym="RGD1566329; Znf652"
                     /note="zinc finger protein 652"
                     /db_xref="GeneID:497984"
                     /db_xref="RGD:1566329"
     exon            1..1040
                     /gene="Zfp652"
                     /gene_synonym="RGD1566329; Znf652"
                     /inference="alignment:Splign:2.1.0"
     CDS             144..1970
                     /gene="Zfp652"
                     /gene_synonym="RGD1566329; Znf652"
                     /codon_start=1
                     /product="zinc finger protein 652"
                     /protein_id="NP_001073676.1"
                     /db_xref="GeneID:497984"
                     /db_xref="RGD:1566329"
                     /translation="MSYTASPCQELVEPCAVHAEGMAQEESHRSQAPPTFYHGASQEL
                     DLSTKVYKRESGSPYSVLADSKMSKPHLHETEEQPYFREPRAVSDVHTVKEDRENSDD
                     TEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEEEEETEED
                     ATDNSSDYGENGRQKKKEKQVEKVRVTQRRTRRAASVAAATTSPTPRTTRGRRKSAEL
                     PKRKKRAAKEPKAPVQKAKCDEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKC
                     GKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFACEICE
                     KKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDER
                     FQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFT
                     SRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLA
                     SAPAAPAPAVANTPTSPAPAVSMNPVGSALPSRPVPHPFSHLHIHTHPHHSHHLPIPP
                     VPHLPPPPALFKSEPLNHRSQSEDTFLRHLAEKNSPAQAQHH"
     exon            1041..1188
                     /gene="Zfp652"
                     /gene_synonym="RGD1566329; Znf652"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1304
                     /gene="Zfp652"
                     /gene_synonym="RGD1566329; Znf652"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1449
                     /gene="Zfp652"
                     /gene_synonym="RGD1566329; Znf652"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..2641
                     /gene="Zfp652"
                     /gene_synonym="RGD1566329; Znf652"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacaggaaga actgcgtgca gactccagga gtttcttatt ttcacttctt gagtagttag
       61 ttctctgtgg atggagaaag attcgagttt taattgccct gttttcaagg tgttctgtgt
      121 agtctgaact gggccacttc ccaatgagct acacagccag tccttgtcag gaactggttg
      181 aaccctgtgc agtgcatgca gaaggaatgg cccaggaaga gagccatcga agtcaagcac
      241 cacctacctt ctatcatggt gctagccagg agctcgacct gtccaccaaa gtatataaaa
      301 gggaatctgg aagcccttac tctgttctag cagattccaa gatgagcaaa ccacatctcc
      361 acgagaccga ggagcagcca tatttcaggg agccaagggc agtgtctgac gtgcacactg
      421 tcaaagaaga ccgggagaat tctgatgaca cagaagagga ggaggaagtc tcttacaaaa
      481 gggagcagat catagtggag gtaaacctta ataatcaaac attaaatgta tctaaagggg
      541 aaaagggtgt ctcttctcag tccaaagaga ctcctgttct taagacaagc agcgaggaag
      601 aagaggaaga gactgaggag gacgccacag ataacagcag tgactacgga gagaacggac
      661 ggcagaagaa aaaggagaag caagtggaga aagtcagggt tacacaaagg cgaacccgga
      721 gagctgcctc tgttgccgca gctaccactt cccctacgcc ccgtacaact cgaggccgga
      781 ggaagagtgc agagctacct aagaggaaga agcgggccgc caaggagcct aaagcgccag
      841 tccagaaagc taagtgtgac gagaaagaga ctctcacctg tgagaagtgc cctagggtgt
      901 ttaatactcg ctggtacctg gagaagcaca tgaacgttac tcacaggcgc atgcagatct
      961 gtgataaatg tggcaagaag tttgtcctgg aaagtgagct gtcccttcac cagcagacag
     1021 actgtgaaaa aaacattcag tgtgtctcct gtaacaaatc cttcaagaaa ctctggtccc
     1081 ttcatgaaca tatcaagatt gtccatggat atgcagaaaa aaaatttgcc tgtgagattt
     1141 gcgagaagaa gttctatacc atggctcatg tacggaaaca catggttgca cacacaaaag
     1201 acatgccatt tacatgtgag acctgtggaa agtctttcaa gcgcagtatg tcactcaagg
     1261 tgcactcctt gcagcattct ggagagaaac ccttcagatg tgagaactgc gacgagaggt
     1321 tccagtacaa gtaccagctc cgctcccaca tgagcatcca catcgggcac aagcagttca
     1381 tgtgccagtg gtgcggcaag gacttcaaca tgaagcagta cttcgacgag cacatgaaga
     1441 cgcacactgg agagaaacct tttatctgtg aaatctgtgg caaaagcttc accagtcgac
     1501 ccaacatgaa gaggcaccgc agaactcaca caggcgagaa gccctacccc tgtgacgtgt
     1561 gtggtcagcg gttccgcttt tccaacatgc tgaaggccca caaggagaag tgcttccgag
     1621 tgaccagccc agtgaatgtg ccaccagcgg tccagatccc attggcctca gctccagccg
     1681 ctccagctcc agccgtggcc aacactccca cgagcccagc ccccgcagtc agtatgaacc
     1741 ctgtgggtag tgcacttccc tcaagacccg tcccacaccc cttctcacac ctgcacatcc
     1801 acacgcatcc acaccactcg caccaccttc ccatccctcc tgtgcctcac ctgcccccgc
     1861 ctccagctct cttcaagagt gagcccctaa accacagaag ccagagcgag gacacctttc
     1921 tgaggcacct ggcggagaag aacagcccag cccaggccca gcatcattag caccagctgg
     1981 tgagtcccca tggtgagtcg gcagaagggc tgcagcggac ttctctgggg ccttcctgtt
     2041 tccatggcct ccgtcagggc ctctgccatt gtcctgggga accacaagac tgacatgagg
     2101 gagtgagtaa gaagactgcc cttgaaacca ggggaaccac cgaactaaag cccaatttgc
     2161 ttgcattttc tgatgacttt tataaatttc agatactgtg attgtgggat tttataattt
     2221 catatcagcg gatgaggtat gcttgctttt atatcccggt cttctcctca aagaggggat
     2281 gggcctggtt tcctttatac taatcgggaa ggctgtgaga ttaatccaga gcattaactg
     2341 tatcactgtg tattgtaatg aattcttttc agcttttggt gctggctgca gagtcgcgct
     2401 ggccttgttt cacacaatat caagcattat agagaagatg ggagtttcct tctttgtgta
     2461 gctcttttaa cacactcttt attttactac agaaattatt ttagaggttt tgtatagact
     2521 ttagtagtct gtttctaaaa tgagatgtat ttcaataagc tgtgtaattt tttcagtgta
     2581 gctaaaccca tgttgtaaaa tagataaatt tttataatca tcaaaatgtg attcttaaag
     2641 a
//
