LOCUS       NM_001400773            6266 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 646 (Zfp646), mRNA.
ACCESSION   NM_001400773 XM_008759939
VERSION     NM_001400773.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6266)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 26, 2022 this sequence version replaced XM_008759939.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1053135.1,
                                           SRR26360186.340228.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-370               JAXUCZ010000001.1  191916101-191916470
            371-5712            JAXUCZ010000001.1  191917810-191923151
            5713-6266           JAXUCZ010000001.1  191924887-191925440
FEATURES             Location/Qualifiers
     source          1..6266
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q37"
     gene            1..6266
                     /gene="Zfp646"
                     /gene_synonym="RGD1561579; Znf646"
                     /note="zinc finger protein 646"
                     /db_xref="GeneID:309003"
                     /db_xref="RGD:1561579"
     exon            1..370
                     /gene="Zfp646"
                     /gene_synonym="RGD1561579; Znf646"
                     /inference="alignment:Splign:2.1.0"
     exon            371..5712
                     /gene="Zfp646"
                     /gene_synonym="RGD1561579; Znf646"
                     /inference="alignment:Splign:2.1.0"
     CDS             453..5813
                     /gene="Zfp646"
                     /gene_synonym="RGD1561579; Znf646"
                     /codon_start=1
                     /product="zinc finger protein 646"
                     /protein_id="NP_001387702.1"
                     /db_xref="GeneID:309003"
                     /db_xref="RGD:1561579"
                     /translation="MEDMPLSFSCSDCQRHFPNLPELSRHRELLHSSANQDREETDGI
                     PHPYRSHSRSLANHQRNHETGLFPCTTCGKDFSNPLALQSHMRTHAPESHQRHGPPHA
                     KKTTARLQSETMSTDSWGQRLGSGEGWENQTKHAQETCEWESGADPRAASGTWEDPPT
                     KQREGLEIQPDCKGSTGHWVATATSDGAPPLPTAASSLLSNLEQYLAESVVDFTEAQE
                     SSEPLPAEGERRYKCDQCGKTYKHAGSLTNHRQSHTLGIYPCAICFKEFSNLMALKNH
                     SRLHAQYRPYHCPHCPRAFRLPRDLLEHQQSHEGVKEEQPWEDKEMPTTNGHADERNW
                     GQPSKTEMMNGSGELSSSGQLEDGSSEEYRPFCCGDCGRTYRHAGSLINHRKSHQTGI
                     YPCSICSKQLFNAAALKNHIRAHHRPRQGAGEDGQSSVSSTALVSGENAPKAEEVPSV
                     SLDHRPYKCDECGRAYRHRGSLVNHRHSHRTGEYQCSLCPRKYPNLMALRNHVRVHCK
                     ATRRSTDPGTDGSPSPVKKEQPDPVGIEAAFHTDEEHVCKREEEPVSNLPTADRTVPL
                     VCSICGMLFEDLKSLEHHGMTHREGEKSRTDSTLSPTRTFACQDCGKSYRHSGSLINH
                     RQTHQTGDFSCGTCTKHFHTMAAMKSHLRRHNRQWNRRHQKQDNSTGEEEAKLPPVGT
                     WTLKVEKDEDPDSSQDPLGESPCKTEDNLEGDGDCLQVGSKGNECVLKKEEAHFLGDK
                     EGIGTEEGLEKKEACFLDDLDIPGDESSETGFCGSLSGVESDQKKSICQSDSYSADTD
                     TVWKSEATHTCSDCGDSFPHATDLSSHRSCHPPGIYQCSLCPKEFDSLPALRSHFQNH
                     RPGEVASAQPFLCCLCGMIFPGRTGYRRHLHQAHGTSGVSEGSEEEEEGTAETASTHS
                     PPLQLSEAELLNQLQREVEALDGAGYGHICGCCGQTYDDLGSLERHHRSQSSSNRAET
                     VPSHLEGSGDATEMVADHGFEGTVTSVLEEGGDIKSEEGVGGTVADSLCMKAGESFLE
                     SHPRPFQCNQCGKTYRHGGSLVNHRKIHQTGDFICPVCSRCYPNLAAYRNHLRNHPRC
                     KGSEPQMGPISEAGGRSEPQNAAEAGQEQAVVGQLQEELKVEPLEELAGVKEEVWEET
                     TVKEEELEQGLETGCQTEVTSERPFSCEVCGRTYKHAGSLINHRQSHQTGHFGCQACS
                     KGFSNLMSLKNHRRIHADPRHFCCSECGKAFRLRKQLANHQRVHAERRKSRGTQKLIR
                     EDRPFRCGECGRTYRHAGSLLNHQCNHETGRYSCPFCFKTYSNRKALKDHQRLHSDSQ
                     RRRQSGWPQKTAAIHCALCGCGFSGQGSLEQHLREHEESKLELASGQGGQHGTEDSKE
                     DLDDWGLEGRSDDIESVLEHEVKRPGEHSPGRPECSEVTESTQEIGKVDGCQGDRGQM
                     NHNGAWVLQDQLTKPEGKLEDTVSRNPCHLSESQSNGPTLRDTDSWNGADSSSQLQPE
                     SHCCSQCGKTYCQPDGLLNPSINRKDCHSCLLCSKEFLNPVTTKNHNHVAAQSFACST
                     CSRVFEAHSELATHMKTHAVEHSQGACQMEETRDPQAGMLEVDLPGPGKTQEAPSGLP
                     RDPGENGEPANRGQGINFTAAEDKERPFCCAQCGRSYRHAGSLLNHQKAHTIGLYPCS
                     LCPKLLPNLLSLKNHSRTHTDPKRYSCNICGKAFRTAARLQGHGRVHAPQEGPFTCSH
                     CPRHFRHRISFLRHQQQHQEEWTVSSSGASVAPAASRGDCSTASLQDPSPQWPADLNL
                     SL"
     exon            5713..6266
                     /gene="Zfp646"
                     /gene_synonym="RGD1561579; Znf646"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaatacggct cggaggaggg acaggaagtg ttcctaggcg gaagtttcgg gggaagcatt
       61 agcatctagg acacttcctg gttcctggta acaataggaa gtgtccgcgg aactgggcta
      121 gactcttggt tcataccagc tgtgccctat tccccctacc tcctcctttc tcccgctctt
      181 tccctcatct accactcccg ggaaccctgg ctgagtgtgc gtgtgtatga gctcgagaac
      241 cctcgcacca gctccactta gggctcgcgg ctgcagttag ggtaagggtc ccagtgcgca
      301 ggcgcgctcc cgttcacgac ctccaacgga cgcgccggcg gcgggaacca gaaggcactc
      361 ctggtgcgag gccttggccc ttctgcagag agaatgctgc tgccacctgt ctgtccctcc
      421 tgaacctcca gggttttcta ccactttgcc ccatggaaga catgcctctc tcattcagtt
      481 gctctgactg tcagcgccat tttcctaacc tcccagaact gtcacggcat cgggaactgc
      541 tccattcatc tgctaaccag gacagggagg aaactgatgg cattcctcac ccctatcgta
      601 gtcactcaag gagcttggcc aaccaccagc ggaaccatga gactggtctt ttcccctgta
      661 ccacctgtgg caaggatttt tctaatccct tggccctcca gagccatatg aggacacatg
      721 ctcctgagag ccaccaaagg catgggcccc cacatgccaa gaaaaccact gcacgccttc
      781 agagtgagac catgtctact gactcctggg gtcaaaggct tggttctggg gaaggctggg
      841 aaaatcagac aaagcacgca caagagacat gtgagtggga atctggagct gatcccaggg
      901 cagcgtcagg gacttgggaa gatccaccta ccaaacaaag agaaggctta gaaattcagc
      961 cagattgtaa aggaagtaca gggcactggg tagccaccgc cacttctgat ggagcaccac
     1021 cgctccccac cgcagcgagc agcctcctta gcaatttgga acagtatctg gctgaatcag
     1081 tagtggactt cacagaggcc caggagtcca gtgagcctct gcctgctgag ggggagcgaa
     1141 ggtacaaatg tgaccagtgt ggaaagacct ataaacatgc tgggagcctc accaaccacc
     1201 gccagagcca cactttgggt atctaccctt gtgccatctg tttcaaggag ttctctaacc
     1261 tcatggccct gaagaatcac tcgagactgc atgcccagta ccggccttac cactgtcctc
     1321 actgcccgcg tgcctttcgg ctccctcggg atctgctgga acatcaacag tcccatgagg
     1381 gggtaaagga ggaacaacca tgggaagaca aagagatgcc taccacaaat ggacatgcag
     1441 atgagaggaa ctggggtcag ccatctaaaa cagagatgat gaatggttct ggggagctca
     1501 gctcttctgg acagctagaa gatggtagct cagaggagta tcgacctttc tgttgtgggg
     1561 actgtggccg tacctaccgt catgcaggta gtctcatcaa ccatcgaaag agccaccaaa
     1621 caggtatcta cccctgttcc atttgttcca agcagctatt caatgcagct gctctgaaaa
     1681 accatattcg tgctcatcat agaccccggc aaggagctgg ggaagatggt cagtcatcag
     1741 tgtcctcaac tgctcttgta tcaggtgaga atgctccaaa agcggaagag gtcccctctg
     1801 tcagcctgga ccatcgtccc tataagtgtg acgagtgtgg tcgggcttac cgccacaggg
     1861 ggagcctggt gaaccaccgc cacagtcacc ggacagggga gtaccagtgc tcactctgtc
     1921 ctcgaaaata ccccaacctt atggctctgc gtaaccatgt gcgggttcat tgcaaggcaa
     1981 cacgccgaag tacagatcca gggactgatg gttcacccag ccctgtcaag aaagaacaac
     2041 ctgatccagt gggaatagaa gcagcattcc acacagatga ggaacatgta tgcaaacgtg
     2101 aagaagagcc tgtcagtaac ctcccaacag cagataggac agtgcccctg gtgtgtagta
     2161 tttgtgggat gttgtttgaa gatctcaaga gtcttgaaca tcatggcatg acccacaggg
     2221 aaggagaaaa aagcaggaca gacagcacat tgtcaccaac tagaacattt gcttgccaag
     2281 attgtggcaa gagctatcgc cactcaggca gccttatcaa ccacaggcag acccaccaga
     2341 caggagactt cagttgtggg acctgtacca agcatttcca taccatggct gctatgaaaa
     2401 gccatttacg acgtcataat cgacagtgga atagaaggca tcagaaacaa gataatagta
     2461 caggtgaaga agaagccaaa ctcccacctg tgggtacttg gaccctgaag gtggaaaagg
     2521 atgaggaccc agattcttcc caagatcctt tgggagaaag tccttgtaag actgaagaca
     2581 acctggaagg ggatggggac tgtttgcagg ttggatctaa aggcaatgaa tgtgtgctta
     2641 aaaaggagga agcccatttt ctgggtgata aagagggcat aggcaccgag gaaggactag
     2701 aaaagaaaga ggcctgtttc cttgacgact tagacatccc aggtgatgag agcagtgaaa
     2761 ctggcttctg tggtagcctt tctggggttg aaagtgacca aaagaagagc atttgccagt
     2821 ctgactccta ctctgctgac actgacactg tctggaagtc cgaagccact cacacatgtt
     2881 ctgactgtgg ggattctttc ccccatgcta ctgacctgtc gagccatagg tcctgccacc
     2941 ctccaggcat ctatcagtgc tctctctgtc caaaggaatt tgattctctg cctgcccttc
     3001 gcagtcactt ccagaaccat aggccagggg aggtagcctc agcacagccc ttcctctgct
     3061 gcctgtgcgg tatgatcttt cctgggagga ctggctacag gcgtcacctg caccaggctc
     3121 atggcacctc tggtgtaagt gagggttcgg aagaagagga ggaaggcaca gcagaaacag
     3181 cctctaccca cagtcctccc ctacaactct cagaagcaga gctgctgaat cagctgcagc
     3241 gtgaggtgga agctctagat ggagcaggtt atggacatat ttgtggctgc tgtggtcaga
     3301 cctatgatga cctggggagc ctggaacgtc accaccgaag tcaaagttcc agcaataggg
     3361 cagagactgt gcctagccat ttggaaggat caggtgatgc aacagaaatg gttgcagatc
     3421 atggctttga gggcacagtg acctctgtct tggaagaagg tggggacata aagtccgaag
     3481 agggagtggg tggcacagtt gcagacagcc tttgcatgaa ggccggtgaa agctttctag
     3541 agtcccaccc ccgccctttc caatgtaacc agtgtggcaa gacctatcgc catggaggca
     3601 gcctggtgaa ccaccgaaaa atccaccaga caggtgattt catctgtcct gtctgttccc
     3661 gctgctaccc caacctggct gcctaccgga atcatctgcg gaaccaccct cgctgcaaag
     3721 gctcagagcc ccaaatgggg cccatctcag aggcaggagg ccgcagtgaa ccccagaatg
     3781 ctgcagaggc agggcaggag caggctgtcg tagggcagct ccaggaagaa cttaaagtgg
     3841 agcccttgga ggagttggca ggtgtcaaag aagaagtgtg ggaggagacc actgtaaagg
     3901 aggaggaact ggagcagggg ttagagacag gctgtcagac tgaggttacc tctgagcggc
     3961 cctttagctg tgaagtatgt ggccgcacct acaagcatgc tggcagcctt atcaatcacc
     4021 ggcagagcca ccagactggc cactttggct gccaggcctg ctccaagggc ttctcaaacc
     4081 tcatgtcact caagaaccac cggcgcatcc atgcagaccc tcgacatttc tgctgcagcg
     4141 aatgtgggaa agcctttcgc ctgcggaagc agctggccaa ccaccagcgg gtccatgctg
     4201 agcgacgtaa aagtaggggc acccagaaac tgattcgtga ggatcggcct ttcaggtgtg
     4261 gggagtgtgg ccggacttac cgccatgctg gcagcctcct gaaccaccaa tgcaaccatg
     4321 agacaggccg ttacagctgc cctttctgtt ttaagaccta ttccaaccgc aaagccctga
     4381 aagaccatca gaggctgcat tctgatagtc aacggcggcg acagtcagga tggccccaga
     4441 agacagcagc tatacattgt gccctttgtg gctgtggctt ttctggccag ggatctctag
     4501 agcaacatct acgggaacat gaggagagca aactagagct ggccagtggc cagggaggcc
     4561 aacatggtac agaagacagt aaggaggacc ttgatgactg ggggctggag ggcaggtcag
     4621 atgatattga gtcagtacta gagcatgaag tcaagaggcc tggggagcac agtcccggta
     4681 gaccagaatg ttcagaagtc acagaatcta cacaggaaat aggaaaggta gatggctgtc
     4741 aaggagacag gggacaaatg aatcacaatg gtgcctgggt tcttcaggat cagttaacca
     4801 agccagaagg caagttggaa gacactgttt ccaggaatcc ttgtcacctg tctgagagcc
     4861 agtccaatgg tcctactcta agagatacag atagctggaa tggtgcagac agcagctcac
     4921 aactccagcc agagagccac tgctgcagcc agtgtggcaa gacctactgc caacctgatg
     4981 gcctcttgaa ccccagcatt aacagaaaag actgtcacag ttgtttactc tgttccaaag
     5041 agttcttaaa tcctgtgacc actaagaacc acaaccacgt tgctgcccaa agctttgcct
     5101 gtagtacctg tagcagagtg tttgaggccc acagtgaact agccacacac atgaagactc
     5161 atgctgttga gcacagtcag ggggcatgtc agatggagga aaccagagac ccacaagcgg
     5221 ggatgctaga ggtggatctt cctggtccag ggaaaactca ggaggcccca tcaggacttc
     5281 ctagagaccc aggggagaat ggggagccag ctaatagagg acaaggaata aatttcacag
     5341 cagctgaaga caaggaacgt cccttttgct gtgctcagtg tgggcgttct taccgccatg
     5401 ctggtagcct cctgaatcac cagaaggccc ataccattgg actctacccc tgttccctgt
     5461 gtcccaaact tctgcccaac ttgctgtctc tgaagaacca cagcaggacc cacacggacc
     5521 ccaagcgcta cagctgtaac atctgtggga aggctttccg aaccgctgcc cggcttcagg
     5581 gccatggacg ggtccacgca ccccaggagg gaccattcac ttgttctcat tgtcctcgcc
     5641 acttccgcca ccgaatcagc ttcctgcgac accagcagca gcaccaggaa gagtggacag
     5701 tgtctagctc aggagcttca gtggcaccag cagcaagcag aggggactgc tctacagcct
     5761 cacttcagga cccctcaccc cagtggcctg cagacctcaa tctgtccctc tgaacttcag
     5821 gtctccagag gagagctcac tgaagttagg ggtgcaggca gggagaggct tgctctcctc
     5881 atttgctcag gagttgcttg ggcatcccca tctccttttc ccacgaagag gaccctgatc
     5941 tggtttttat cttgagaagg gcatgaggta gtcttcatgt ctgtgcccat gaaagatgaa
     6001 ggatctcctt cccaaccctt tgtcaccatg ttcttccggg gccaggctct gccgaaatgc
     6061 taggatagcc agattctcac ccagggaggt ggattcagag taccacaggt gggaaagttg
     6121 cctgtggaag gggagccttt tactatagtt tgtaacttat tttctaaaat ctattttgta
     6181 acaatttaag ttttaaaaaa ggaaaattgc tctccaacac ccccccccca aaggaaaaaa
     6241 aaaacaactt tttttttttc acaaga
//
