LOCUS       XM_039087164            4513 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 62 (Zfp62),
            transcript variant X1, mRNA.
ACCESSION   XM_039087164
VERSION     XM_039087164.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087164.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4513
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4513
                     /gene="Zfp62"
                     /note="zinc finger protein 62; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 16 ESTs, 2 long SRA reads, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 78 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:497894"
                     /db_xref="RGD:1560191"
     CDS             684..3458
                     /gene="Zfp62"
                     /codon_start=1
                     /product="zinc finger protein 62 homolog isoform X1"
                     /protein_id="XP_038943092.1"
                     /db_xref="GeneID:497894"
                     /db_xref="RGD:1560191"
                     /translation="MSHLKTSMEDEDSAKKNENNSSADSQCPNVEIFHKDHMQNSNID
                     DTFGWVEKQLERPKWKIMKEDKSSIREKIDKPKNTANVKIEQDDETSEKSFYSSTDTM
                     HQTVPTEPKCTEQGEHTENVNGSLHPTPQQNSAADKKSHKCDECGKSFKYNSRLVQHK
                     IMHTGEKRYECDDCRGTFRSSSSLRVHKRIHTGEKPYKCDECGKAYMSYSSLINHKST
                     HSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHT
                     GEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGD
                     KPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKP
                     YKCDICGKAFSYSSGLAVHKSIHPGKKAHECKDCGKSFSYNSLLLQHKTIHTGERPYV
                     CDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCS
                     YCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEEC
                     GKAYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLLNHKKIHLGEKPYKCDVCEK
                     SFNYTSLLSQHKRVHTREKPFECDRCEKVFRNNSSLKVHKRIHTGEKPYECDICGKAY
                     ISHSSLINHKSTHPGKTPYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSY
                     SSLLSQHKRIHTGEKPYICDWCGKAFRNSSGLTVHKRIHTGEKPYGCDECEKAYISHS
                     SLINHKSVHRGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNDCGKAFNIRSNLT
                     KHKRIHTGEESLNMANMESHSGTFQKRIYYEGGNALDGTRMQMPMWEAEPAKSQRNQI
                     EEKLYECKNF"
ORIGIN      
        1 cccgctgccg gcgttcccgc ctctacccgg cccgccccgc ccttcccttc tttgccctcc
       61 ggtcccgggc gggtcctggg gaagagcgtg actctccaca cgcattggga agcgtcctct
      121 tggagtgaag gggaaggaag agcccaggcc cgagccccgc gggcaggctg ccatctgagc
      181 aggccctggg ccaaggaagg gccagagtcc gttccggggt tccttgactg tcatggccat
      241 ttcgggttta gagggaggag aaccccgatt attagcgcct aaaaatttgc cctgcttgcg
      301 gttaagtttg tttctgagac ttggaggtga cctgactcgg tcacccttcc cctttctttt
      361 ggtggtggag aggtatcgag aaacacctgc ggctgtggaa gcagactgtc cacttccggg
      421 gcctctccca ggagaaagtc atcaatagtg ggtgcgacca gagaaggcca tcccccccga
      481 ccacccacca ccacagcaaa ctgagaaagt gttggcttag ggaaaagcag gtgaaggcac
      541 cagaactcaa gtgatccttt ggaaaatcct ggggcagtga tgtaaaagaa agataaagag
      601 gtcaggtgga gacgtccctg ggctaatgat ggtgaagaaa ctgctataca aagaagttaa
      661 atagctatct caaaggtcat ataatgtcac atctgaagac aagcatggag gatgaggact
      721 cagctaaaaa gaatgaaaac aattcaagtg cagactctca gtgcccaaat gtggaaattt
      781 ttcacaagga tcatatgcag aattctaata ttgatgacac ttttggttgg gtagagaagc
      841 agttggaaag acctaaatgg aaaataatga aggaagacaa aagtagcatc agagaaaaga
      901 ttgacaaacc taagaacaca gcaaatgtaa aaatagaaca ggatgacgag acatctgaga
      961 aaagtttcta ctcaagtaca gataccatgc accagactgt ccccacggaa ccaaaatgta
     1021 ctgaacaagg tgaacacaca gagaatgtta atggaagctt acaccctact ccacagcaga
     1081 attctgctgc tgataagaaa tcacataagt gtgatgagtg tggaaaatcc ttcaagtaca
     1141 attctcgtct tgtacaacat aaaatcatgc acactggaga aaagcgctat gagtgtgacg
     1201 actgtagggg aacttttcgg agcagctcca gccttcgagt ccataagcgc attcatactg
     1261 gggagaagcc ctataagtgt gatgagtgtg gcaaggccta catgtcctac tctagcctca
     1321 taaaccacaa aagcacccat tctggggaga agaactgcaa atgtgatgaa tgtggaaaat
     1381 ccttcaatta tagttctgtt ctggaccagc ataaaaggat ccacaccgga gagaagccct
     1441 atgaatgtgg tgagtgtgga aaggccttca ggaacagttc tggtttgaga gtccacaaaa
     1501 gaatccacac aggggagaag ccctatgaat gtgatatctg tgggaaaacc ttcagtaata
     1561 gttcaggcct gagggtccac aaaaggatcc acacaggtga aaagccctat gaatgtgatg
     1621 aatgtgggaa ggcattcatt acttgcagaa cactcctaaa tcataaaagc atccactttg
     1681 gtgataaacc ttataaatgt gatgagtgtg agaaatcttt taattatagc tctctcctca
     1741 ttcagcataa agtcatccac actggtgaga aaccttatga atgtgatgaa tgtgggaagg
     1801 ccttcaggaa cagctcaggc cttatagtgc ataaaaggat ccacacagga gaaaaacctt
     1861 acaagtgtga tatctgtggc aaagcattca gctatagttc aggccttgca gtccataaaa
     1921 gcattcatcc tggcaagaaa gcccatgaat gtaaagactg tggcaagtcc tttagttata
     1981 actcacttct tcttcagcat aagaccattc atactggaga gagaccttat gtatgtgatg
     2041 tgtgtggcaa aacgttcagg aacaattcag gtctcaaagt ccatcggagg ctccatactg
     2101 gggaaaaacc atataagtgt gatgtgtgcg ggaaagccta tatctcacgc tcaagcctta
     2161 aaaatcacaa aggaatccac ctgggggaga agccctacaa atgcagctat tgtgagaaat
     2221 ctttcaacta cagttctgcc cttgaacagc ataaaaggat tcatacaagg gagaaaccct
     2281 ttgggtgtga tgagtgtgga aaagccttca gaaacaattc aggccttaaa gtacataaac
     2341 gaattcacac aggggagaga ccttacaaat gtgaagaatg tggaaaagcc tacatctcac
     2401 tctcaagcct tataaatcat aaaagtgtac accctgggga gaagcccttt aagtgtgatg
     2461 agtgtgagaa agccttcatc acataccgaa cccttctaaa ccacaaaaaa attcatcttg
     2521 gagaaaagcc ctataaatgc gatgtgtgtg agaaatcatt taactacacc tcactccttt
     2581 ctcaacacaa aagagttcat actagagaga agccctttga atgtgacagg tgtgagaagg
     2641 tcttcagaaa caactcaagc cttaaagtgc ataaaagaat acacactggg gagaagccgt
     2701 atgagtgtga catatgtgga aaagcctaca tctcacactc aagccttatt aaccataaaa
     2761 gtacacaccc tggcaagacg ccctatacat gtgatgaatg cggaaaagca tttttctcaa
     2821 gcagaactct cataagccat aagagagtcc atcttgggga aaaacccttc aagtgtgttg
     2881 agtgtgggaa atcatttagc tacagctcac ttctttccca acacaagagg atccacacag
     2941 gggagaaacc ttatatatgt gactggtgtg ggaaggcctt caggaacagc tcaggcctca
     3001 cggtacataa aaggatccac acaggggaaa aaccctatgg atgtgatgaa tgtgaaaagg
     3061 catacatttc acactcaagt cttatcaatc ataaaagtgt ccaccgtgga aagcagccct
     3121 ataattgtga gtgtgggaaa tctttcaatt acagatccgt ccttgaccag cacaaaagga
     3181 tccacactgg aaagaagcca tatcgatgta atgattgtgg gaaggcattt aatatcagat
     3241 caaaccttac caagcacaaa agaatccata caggggagga atctttaaat atggcaaata
     3301 tggaaagtca cagtggcaca ttccagaaga ggatctacta tgagggaggg aatgctctgg
     3361 atgggaccag gatgcagatg cctatgtggg aggcagagcc tgccaagtct caaaggaatc
     3421 aaatagaaga aaaactttat gaatgtaaga atttctgagg tctttagtca tggcttataa
     3481 taatcatagt gtgagtgaaa gaattctgag tgatcatgag caattccttc cacgtgattc
     3541 agtcatagca ggaacagttc tagtgtcaca atagttgagc cctttaggaa tataaaatac
     3601 cactggatat aaaacctttc aaagtgatgg aactcttaaa aaatgtagtc tggacataga
     3661 acataaagat aaaggtcttt agttagaaat cttattcacc actacaaaga tcctatttgg
     3721 ataaataagt gaataagaat gtagaaagtt ggtataattt tgacctctat actttggtca
     3781 gtggaaaaaa gatccaagaa gggcctctaa taggcaaatt cagggagagg atggtttcag
     3841 ggaatatcag tttattagta gtcatgaaat tatagactta acaataatgg tttgtggtag
     3901 gaagatcaca acttctgaaa caatttagat gtcttaggaa aaggcatagt caaatctgtg
     3961 acataatcac tttaaaatgc atattagttg gagtatacta ttatactaac tgaactggta
     4021 agactagagt ttcaaatcaa ttcccttaat atgtaataga gataataaat gatgacctgg
     4081 gaggtggcat tcacatatac tgagagagcg gaaggatttc agtatcttca gttaagtaag
     4141 ggaacacatc ttcaacatga atttgcacct tacaggaaaa attcagggac tcctatgaat
     4201 taaaaaaaag tctcaaagga aggcatttta ttacaagagc taaataagta ccagtaatta
     4261 agaagaaatt catgtcttaa aaacaatatt gttctaggtt cggtccccag ctccgaaaaa
     4321 aagaaccaaa aaaaaaaaaa aacaaaaaac aaaaaaacca atattgtttc agaaagtgta
     4381 aaaattttat gtactacata catgtgtata ttgtctgttg taaaatatga atatgttcaa
     4441 aactcacttt gccataaagg ctgaatagtt atggcaaggt aagggggggt ataataaatg
     4501 cctcaaatgt aaa
//
