LOCUS       XP_008757435             686 aa            linear   ROD 22-FEB-2024
DEFINITION  zinc finger protein 60-like isoform X1 [Rattus norvegicus].
ACCESSION   XP_008757435
VERSION     XP_008757435.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_008759213.4
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..686
                     /product="zinc finger protein 60-like isoform X1"
                     /calculated_mol_wt=80304
     Region          14..75
                     /region_name="KRAB"
                     /note="krueppel associated box; smart00349"
                     /db_xref="CDD:214630"
     Region          175..195
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          199..635
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          203..223
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(208,210,212,214..215,218..219,222,236,238,242..243,
                     246..247,250,264,266,268,270..271,274..275,278)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          231..251
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          259..279
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          316..336
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(321,323,325,327..328,331..332,335,349,351,355..356,
                     359..360,363,377,379,381,383..384,387..388,391)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          344..364
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          372..392
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          400..420
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          428..448
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          456..476
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(461,463,465,467..468,471..472,475,489,491,495..496,
                     499..500,503,517,519,521,523..524,527..528,531)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          484..504
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          512..532
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          568..588
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          596..616
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(601,603,605,607..608,611..612,615,629,631,635..636,
                     639..640,643,657,659,661,663..664,667..668,671)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          624..644
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          652..672
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..686
                     /gene="Zfp59"
                     /coded_by="XM_008759213.4:157..2217"
                     /db_xref="GeneID:685610"
                     /db_xref="RGD:1591403"
ORIGIN      
        1 massnsqhtv cgsvtfrdva vdfsqeeway ldatqkvlyr dtmletyshl vtvvgscvsk
       61 pylitlleqe kepwmavkee tdrlspdles eyetqelfpd nhiytinlfk qtirhisetf
      121 elkgssfsng hsystfrglq dcqegdvdqk ntnkekvpty tchtlthsle klyeckeygk
      181 yfgcsstltq yqsihsvekp yeckdcgkaf kiqqhltrhl nahsgerpfe csecgksfkh
      241 dsslvqhkfi hagvkpfecn ecgkafnrrs nfmrhqkvhs dkkpfqykey gnvlnvlael
      301 itqprnihtg kksfeckqcg kifnsgsylm qhqnihtsek afgcnvcgka frlqaylseh
      361 qkthtdekpf qcklcgsvfr rkyhltehqr ihtdvklyqc eecgkffrrr snfiehqsih
      421 snvkpykckl cgldfrlqsl lnqhqrihtd ekpyqckecg kffrrrsnyt ehqsihtnvk
      481 pykcnlcgta frlqslltqh qrihtgekpy eckecgkffr rssnfiehrs ihsnvkpykc
      541 klcgsdfrlq sllnqhqrih tgekpyqcke cgkffrrrsn ytehqsihsn vkpftcklcg
      601 lafrlqsllt qhqrihtgek pyqckecgkf frrssnfteh qsvhtgekpf dckkcgkafr
      661 lnihlirhqr fhngenaksv erpfvl
//
