LOCUS       NM_001024258            3097 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 574 (Zfp574), mRNA.
ACCESSION   NM_001024258 XM_218459
VERSION     NM_001024258.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3097)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3097)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 3097)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC094953.1.
            
            On May 27, 2005 this sequence version replaced XM_218459.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094953.1, FQ170749.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3097
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3097
                     /gene="Zfp574"
                     /gene_synonym="Znf574"
                     /note="zinc finger protein 574"
                     /db_xref="GeneID:308434"
                     /db_xref="RGD:1311420"
     exon            1..102
                     /gene="Zfp574"
                     /gene_synonym="Znf574"
                     /inference="alignment:Splign:2.1.0"
     exon            103..3064
                     /gene="Zfp574"
                     /gene_synonym="Znf574"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..2819
                     /gene="Zfp574"
                     /gene_synonym="Znf574"
                     /codon_start=1
                     /product="zinc finger protein 574"
                     /protein_id="NP_001019429.1"
                     /db_xref="GeneID:308434"
                     /db_xref="RGD:1311420"
                     /translation="MTEESEETVLYIEHRYVCSECNQLYGSLEEVLVHQNSHVPQQHF
                     ELVGVADPGVTVATEATSGTGLYQTLIQESQYQCLECGQLLLSPSQLLEHQELHLKMM
                     APQEAVPAEPPPKVPPLSSSTIHYECVDCKALFASQEMWLSHRQTHLRATPNKAPAPV
                     VLGSPVVLGPPVGQARVAVEHSYRKAEEGGEGAAVPSVAAATEMVTEVELLLYKCSEC
                     SQLFQMPADFLEHQATHFPAPVPEAEEPATQQETLVPSPTEAAVSQPDPLPASDHSYE
                     LRNELRNGEAMGRDRRGRKPRRSSSGESGATQELFCSACDQIFLSPHQLQQHLRSHRE
                     GVFKCPLCSRVFPSPSSLDQHLGDHSSESHFLCVDCGLAFGTEALLLAHRRAHTPNPL
                     HSCPCGKTFVNLTKFLYHRRTHGAGGVPLPTTPVPPEEPAISFPEPAPAETGELEAPE
                     LPVSEESSAEPAAPGTYRCLLCSREFSKALQLTRHQRFVHRLERRHKCSICGKMFKKK
                     SHVRNHLRTHTGERPFPCPDCSKPFNSPANLARHRLTHTGERPYRCGDCGKAFTQSST
                     LRQHRLVHAQHFPYRCQECGVRFHRPYRLLMHRYHHTGEYPYKCRECPRSFLLRRLLE
                     VHQLVVHAGRQPHRCPSCGAAFPSSLRLREHRCAAAAAQAPRRFECGTCGKKVGSAAR
                     LQAHEAAHAAAGPGEVLAKEPPAPRAARATRTPVAPSPTALGGTTSAAPAAPARRRGL
                     ECSECKKLFSTETSLQVHRRIHTGERPYPCPDCGKAFRQSTHLKDHRRLHTGERPFAC
                     EVCGKAFAISMRLAEHRRIHTGERPYSCPDCGKSYRSFSNLWKHRKTHQQQHQAAVRQ
                     QLAEAEAAVGLAVMETAVEALPLVEAIEIYPLAEADGVQISG"
ORIGIN      
        1 ggcgagacga cgggccctag agaggacgcg gcgctagagt ggcggtgcaa agggagctac
       61 agcccgcggc ccggcctggg gccggcgaga cagcccaggc ggcccagggc cttgctgctg
      121 ccatgactga agagagtgaa gaaacggtct tgtatattga gcaccgctat gtctgctctg
      181 agtgcaacca gctctatgga tccttggagg aggtgcttgt gcaccagaac tcccatgtgc
      241 cccagcagca ctttgagctg gtgggcgtgg ctgaccctgg agtcacagtg gccacagagg
      301 ccacttcagg tacaggccta tatcagaccc tcatacagga gagccagtac cagtgtctcg
      361 agtgtgggca gcttctcctg tcacccagcc agctcctgga gcaccaagag ctgcacctga
      421 agatgatggc accccaggag gcagtaccag ctgagccacc acccaaggtg ccccccttga
      481 gctccagcac catccactat gagtgtgtgg actgtaaggc tctgttcgcc agccaagaga
      541 tgtggctgag ccatcggcag acgcatctca gggccacacc caacaaggct cctgcccctg
      601 ttgtcttggg gtctccagtt gtcttgggcc cccctgtggg ccaggcccga gtagctgtgg
      661 aacattcgta ccgaaaagca gaagagggtg gggagggggc agctgtccca tctgtggctg
      721 ctgccactga gatggtgaca gaggtggaac tgctcctcta caaatgctct gagtgctccc
      781 agctcttcca gatgccagct gacttcctgg aacatcaggc cacccacttc cctgctcctg
      841 tcccagaggc cgaggagcct gccacccagc aggaaactct ggtcccctca cccactgagg
      901 cggcagtatc tcagcctgac cccctgccag cctctgatca cagttatgag ctgcgtaacg
      961 agctgagaaa tggggaggcc atggggcgag atcgccgtgg gcggaagccc cggaggagca
     1021 gcagtggaga gtcgggtgcc acccaggaac tgttttgctc agcctgtgac cagatctttc
     1081 tctcacccca ccagctgcaa cagcaccttc ggagtcaccg ggagggtgtt tttaagtgtc
     1141 ccctgtgcag tcgtgtcttc cccagccctt ctagtctgga ccaacacctt ggtgaccata
     1201 gcagtgagtc acattttctg tgtgtggact gtggcctagc ttttggcaca gaagctctcc
     1261 tcctggccca ccgtcgagcc cataccccga accctctgca ttcatgtccc tgtgggaaga
     1321 cctttgttaa cctcaccaag ttcctttatc accggcgtac ccatggagca ggaggtgtcc
     1381 ctttgcccac aacaccagtt ccaccagagg agcctgctat cagctttcct gagccggccc
     1441 ctgcagagac tggagagcta gaggccccgg agctccctgt atctgaggag agttcagctg
     1501 agcctgcagc tccaggcact taccgctgcc tcctgtgtag ccgggagttt agtaaggcat
     1561 tgcagctgac ccggcaccag cgttttgtgc accggctgga gcggcgccat aaatgcagca
     1621 tttgtggcaa gatgttcaag aagaagtctc acgtgcggaa ccatctgcgt acacacacag
     1681 gggaacggcc cttcccctgc cctgactgct ctaaaccttt caactcacca gccaacctgg
     1741 cacggcaccg gctgacacac acaggggagc ggccctatcg ctgtggggac tgtggcaagg
     1801 ctttcactca gagctctact ttgaggcagc atcgcctggt gcatgcccag catttcccct
     1861 accgctgcca ggagtgtgga gtacgttttc accgccctta ccgcctgctc atgcaccgct
     1921 accaccacac aggcgagtac ccctacaaat gtcgggagtg cccccgctcc ttcttgctgc
     1981 gccggctgct agaggtccac cagcttgtgg tccatgctgg gcgacagccc caccgctgcc
     2041 cgtcctgtgg ggctgccttc ccctcgtcac tacggcttcg tgagcatcgc tgtgcggctg
     2101 ctgccgccca ggccccacgg cgctttgagt gtggcacctg cggcaagaaa gtgggctctg
     2161 ctgctcgcct gcaggcacat gaagctgccc acgctgctgc aggtcctgga gaggtcttgg
     2221 ctaaggagcc tccggctccc cgggccgcaa gggccactcg cacaccagtt gctccctctc
     2281 caacagccct tggtggtaca acctctgctg cccctgcagc ccctgcccgg cgccggggtc
     2341 tggaatgcag tgagtgcaag aagctcttca gcacggagac atcactgcag gtccatcggc
     2401 gcatccacac aggcgagcgg ccatacccgt gcccagactg tggcaaggcc ttccgccaga
     2461 gtacccatct gaaagaccac aggcgcttgc acacaggcga gcggcccttt gcttgcgaag
     2521 tgtgtggcaa ggcctttgcc atctccatgc gcctggcaga acatcgacgc atccacacgg
     2581 gtgaacgacc ctactcctgc cctgactgtg gcaagagcta ccgctccttc tccaatctct
     2641 ggaaacaccg caagactcac cagcagcagc atcaggcagc agtgcggcag cagctggcag
     2701 aggccgaggc tgctgtgggc ctggctgtga tggaaactgc agtggaggct ctgccccttg
     2761 tggaggccat tgagatctac cctctagctg aagcggatgg ggtccagatc agtggctaac
     2821 tggcccccat ttttctcttc agcatcacca agccctggtg ctgaaggccc tccaacagcc
     2881 cctgaaaacc tatgtacata ttgtagccct ctctcctctc caccaccaca tgagttctgt
     2941 aactgatttt ttttttgagg gggttgctct ggagtccttg atatgtaaag gacccttctc
     3001 cccatcttcc acctgtttgg tggtctccaa atgaagcagt caataaagac tgattggaca
     3061 tttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
