LOCUS       NM_001134561            6581 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 563 (Zfp563), mRNA.
ACCESSION   NM_001134561 XM_001078423 XM_234835
VERSION     NM_001134561.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6581)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 7, 2012 this sequence version replaced NM_001134561.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1710473.1, FQ233442.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-53                JAXUCZ010000007.1  12898891-12898943
            54-180              JAXUCZ010000007.1  12907979-12908105
            181-241             JAXUCZ010000007.1  12908284-12908344
            242-6581            JAXUCZ010000007.1  12910147-12916486
FEATURES             Location/Qualifiers
     source          1..6581
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..6581
                     /gene="Zfp563"
                     /gene_synonym="RGD1308729"
                     /note="zinc finger protein 563"
                     /db_xref="GeneID:314584"
                     /db_xref="RGD:1308729"
     exon            1..53
                     /gene="Zfp563"
                     /gene_synonym="RGD1308729"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..1397
                     /gene="Zfp563"
                     /gene_synonym="RGD1308729"
                     /codon_start=1
                     /product="zinc finger protein 563"
                     /protein_id="NP_001128033.2"
                     /db_xref="GeneID:314584"
                     /db_xref="RGD:1308729"
                     /translation="MDCLTFEDVAVNFTLEEWDLLDPSQKQLYTDVMQETFKNLIAIG
                     QIEEGRRSKDDDEESRRSLRSGLVELLCKPRESRQCEEIFSEFPDTVVNKKTPHGVKL
                     CESHLCEDILIGLPPLNMHIPVQRGHRPYEYETYEDSLYKFRECGKAFLYSECYLKHE
                     NAHIIEKPYKCQQCGKAFSSSSKVRRHERTHTGEKPYMCNHCGKAFPSRGSLRRHDRI
                     HSGEKPFVCKYCGKAFTGQSSLPRHERIHSGEKPYVCKYCGKCFISSSTCRVHERTHT
                     GEKLYVCNLCNKAVTTRTSLRNHERIHSGEKPYVCEQCGKGFISSGTFRIHERIHTGE
                     KPYRCKECGKAFTIQSSLQRHERIHTREKPYDCKECGKAFSGYSSLRRHERIHSGERP
                     YACKQCGKAFPALGDCQRHEQIHTGEKPYICKQCGKAFTRCGSLRIHEKTHARQNS"
     exon            54..180
                     /gene="Zfp563"
                     /gene_synonym="RGD1308729"
                     /inference="alignment:Splign:2.1.0"
     exon            181..241
                     /gene="Zfp563"
                     /gene_synonym="RGD1308729"
                     /inference="alignment:Splign:2.1.0"
     exon            242..6581
                     /gene="Zfp563"
                     /gene_synonym="RGD1308729"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttggccctag gagccggggg gtgaggccgc aggagtctcc aggaacagac atggactgtc
       61 taacttttga ggatgtggct gtgaacttca ccttggagga gtgggatttg ctggatcctt
      121 cccagaagca actctacaca gatgtcatgc aggaaacctt caaaaaccta attgctatag
      181 gacaaattga ggaaggccgg aggagtaaag atgatgatga agagtctagg agaagtctga
      241 gaagtggact ggtggaattg ttgtgtaaac ccagagaaag tagacaatgt gaagaaatct
      301 tcagcgagtt tccagatact gtggtgaata agaaaacccc tcatggagta aaactgtgtg
      361 aaagtcattt atgtgaagac atacttatcg gtctcccacc cctgaatatg catattcctg
      421 ttcaacgagg acatagacca tatgaatatg agacatatga agacagtctc tataaattta
      481 gggagtgtgg gaaagccttc ctgtattctg aatgctatct gaagcatgaa aatgctcaca
      541 tcatagagaa accgtataaa tgtcaacaat gtgggaaagc cttttcttct tcaagtaagg
      601 ttcgaagaca tgaaagaact cacactggtg agaagcccta catgtgtaac cattgtggga
      661 aagccttccc tagtcgtggc tcccttcgcc gtcatgacag gattcacagt ggagagaagc
      721 cctttgtgtg taagtattgt gggaaagctt tcaccggtca gagttcactt ccacgccatg
      781 aaagaattca cagtggagag aaaccctatg tctgcaaata ctgtggcaaa tgtttcattt
      841 cttcaagtac ctgtcgagta cacgaacgga ctcacactgg agagaaactc tatgtttgta
      901 atctgtgcaa taaagctgtc actactcgta cttcccttcg aaatcatgaa cgaattcaca
      961 gtggtgagaa accctatgtt tgcgaacagt gtgggaaagg tttcatctcc tctggtacct
     1021 ttcgaataca cgaacgaatt cacactgggg agaaacccta tagatgtaag gaatgtggta
     1081 aagccttcac tatacagagt tctctccaac gccatgaaag gattcacact agggaaaaac
     1141 cctatgactg taaggaatgt gggaaagcct tcagtggtta cagctccctt cgacgccacg
     1201 aaaggattca cagtggagaa agaccctatg catgcaagca gtgtggcaaa gcttttcctg
     1261 ccttgggtga ttgtcagaga catgagcaaa tccacactgg tgagaagccc tatatatgta
     1321 agcagtgtgg gaaagccttt actcgttgtg gttccctcag aatacatgaa aagacccatg
     1381 ctagacagaa ttcctaagca taaaatgtga aagaactcct tgtcgcgtgc cctttctaaa
     1441 aaaaaaaaaa aaaaactgtt acaatgttta gggaagaaaa caagtatatc aagttatgag
     1501 ggctgccact ggtcatactg ttaaattaac aaaaaggaca agctaagaac tcacccaata
     1561 tcaaaacttg ctcagaaagt tgactgtaag aaatagtttt aaaattctgt actacctgag
     1621 gattttcaca taagtttcac tagctcataa atgtacactg tgaaaggttc aatgcaaagt
     1681 aatttatgta gaatgctcca aaaattacat aacccgaagg aaaacatcct aaaattatat
     1741 tacactgatt agtttattac taaaatagat atacaaacta tttctaagta taactcctgt
     1801 aaataaatgg tggcatgaca taattctgtg aagtttgctt aagcaatgga gcaagagagt
     1861 tttttttttt aaccctgttc attaccattc tgaagatttt ggttgtctga atggtggaat
     1921 ggccttttga gatgtagtta tggcaaataa caacacatga gttggcacta ggtcacagtt
     1981 ccaggacaag gtcctccaga atgatgggtg tgctctaaat tggcatctca cacaatactg
     2041 tctctctcat gggcctagga atcaagtggg ggtggggatc acccctataa ctcactagca
     2101 aacactgttt tcgtgttctg tagatatgaa ggttctacca cgaggaacac ccattccttt
     2161 gaactggaaa ctaaggcacc cacacatatc caaccccata ccaatttact ctgcgttcct
     2221 tgtgcccttg agttaactaa aaattgttac tgtcaactgg aattacagat ccacatgacc
     2281 agtggggaat gaaaacacca tttagcaatg gagatgttct gattattttt tgtctacttt
     2341 acacaatcta gagttatctg gaaagagaaa tcaccattag attgacctgt agacaatgat
     2401 gtatgggaca gggctactgt gggtagtgcc actcctgggc aggtggccct gtgttgtata
     2461 agaaagcagg ctaagtggcc atgaggagca agccaagact caagacttcc tccatggtct
     2521 ctgcttcaga tcctacttcc aagttccaag ttcctgcctt aagattctac cctggtttct
     2581 cttggggctg gaatataaac gataatgaaa acatcctttt ttcctcaaat caatttggtc
     2641 agtgttttag caacagcaac aataactcaa actaggacac aaggaaagga agactattcc
     2701 tggatttcct tgtcattgct gtgtctggtg attaaaaccc atggggagct acaactcggt
     2761 ccaaacaggg taagaaagaa tggaagtgtg aactacttgt aaagagctag ttgatttggg
     2821 gatatgatgt ttttatttac ttacttccaa gtaaggtttt ttatactaaa aattgatatt
     2881 aaattaaaat tttaaaaatc aagatgctta gtgtttgcta aagaggaaga aatacaaaat
     2941 gatatgagaa ggtacttata aatatggtat gcctacagtt gtagaagtga ggattctaat
     3001 tatattgggt cttattttgt taagagtatg tatgttggac tgggtgtggt ggcatattcc
     3061 tttaatccca gcactcagga gacaaaggca aatgacttaa ttcaagacca acttggttga
     3121 catagtgaat tccagaacag ccagggatat agagggagac cttgactcaa aaacaacgga
     3181 agaaaagaat atgggtttac ttttatactt gatagtgttg attgccaatg tgacaaatct
     3241 aaaatcacct gtgagacggg cccctgagag tgcctgtggt cagttatctt gattgcataa
     3301 atgaggtggg ctctcctcct gttggaagtt ccatttcctg actggaatcc acgagtgtat
     3361 acaagtgcag agctaactat ctgagcgcaa gcatacatgc attgatttac tgctctctgc
     3421 ttttgactgt ggatgtaatg tgagagctgc tcaagttact gccatattga cttccccaca
     3481 gtgatggaat tatgagccaa ataaaccccc ttccctttat gttgctttta cctggatatt
     3541 ttgtcactat gacaggaagt gaggctaaga catatacaca cacatagtaa gcagatattc
     3601 atgttttctt ttgtctcatc ctttaccatg taatctgttt attgatttaa taagacggta
     3661 ttgctatgta ttttcgtatt tagttatggt ataataagtg aataagcttt cctcagggga
     3721 ctttgacacc cattctgagg aagcaccacg ttttcatttg tacatgaaag tcacattagg
     3781 tgagataact ttgttattgt ctttatttaa aattgtgtat aacataggtt attggatgtc
     3841 aaaggaggga ctagcggtgg ttgttcttgg ttgttctctt gactggtgaa acgcacctgg
     3901 atattggtga ggaaatctcc acagaagaag tgatatgtag gacagtgact tggaggggaa
     3961 aactcatatt caatgtgggc agcgattcct aacaacatcc tggatgaagt ctcaggaaaa
     4021 aacagcaggc acatacctgc cttccctttg gtttgagtgc atctgttgat gctactgtga
     4081 tctcctgtct tcttcctctt gactgggact tagttctagt gacgttcgag gagcctccag
     4141 tatttcggcc tcagatcagg gcccctgagg catttagctt ttagagtggg cagctagcaa
     4201 attctctgct ctctgctaca agcagcccct atcatgtatg acaatctagt aaataccttc
     4261 tttaataatt atcttggttc tatttggaga tctctgatat ctgattaatt gaaagagaaa
     4321 ttttgctttt tcagctttac aaaatttatt caattttaca catttcaaag acacgtacag
     4381 aatgtttggg gctttggtgt tttgttttat tatttggtct ggatccatac tacgaattaa
     4441 gaactatcta ccttttaaaa gtctgtgtgt agatatgtat gtgctcagaa catgggtgta
     4501 ggtcgggtgt cggtcttcac cttccctctt cctgaggcag ggtctcgttt ctgctgcatc
     4561 tgctagcgga cccgtgaact tccggggctt ctgcttctac ttcctgtctt gtagaaatac
     4621 agggtcacag gtgtgtgact gccgcttctg ggcttcactt aggttctgga ggggtttaac
     4681 tcaagtcttc tcactgggca atcctttatc tacaactatt gctcaaccag aattatatat
     4741 ttttgcaagt gcgttaacat ttctcatcat aaaatatgct gttcctaagt aagtgtgtgg
     4801 ttcattccag tcatctggac gagttttagc ttttatatct tagatactca agtgtttcct
     4861 atgatgcact gaacagtctt ccagtaaata caaaatgttc ttcaaatttg gtaatatttg
     4921 cttttatgaa ctcacagtga aatgagttca taacttgaaa ttgaaaacta ctgaactcca
     4981 aagctaagtt caggctaaat tgaaaaatgt tcaaatggaa gcatgccaga aggagaaaat
     5041 tatggaaaac gaaacacggg cacacacaca cacacacaca cacacacaca cacacacaca
     5101 cacacgcaga gtctctgatt ctctttgctc ataaaagcag gaaacatgag gtaccattgg
     5161 taaaactcaa attgaaaagc ttgccatggt agtgcacacc tttaactccc caatatttgg
     5221 gagtcagagg caggaggttc tctatgagtt caagaccagc ctaatctgca cagtgagacc
     5281 ctgtgtcata agtagagaag aacaaagaag gaagaagaag aaaaagaaaa caaatttcct
     5341 tgtttaagac taaaatgatg tataatcttg actttctagc attcgcctct tattcccaaa
     5401 tctgtacaat tagccacaga agtctgcctc actacaaatg tgtttatcaa acagaattct
     5461 ttaactttta agttttgtca tggactgtac tctctaagaa gtgcttttaa aagggtttgt
     5521 ttactggggg aaggaatgaa gggggtctaa gcaaccttta aaggaattat ttgagagcca
     5581 ccaaaataaa cacatccatt ataaagccat ttaattgcaa ctctccattg agaagcccac
     5641 ctccatactc ttggttatac cgttttcttc ttcccttgag cccctttcta ttttaatctc
     5701 aaatctacat tggctgagcc tgaaattctt ttcctcatca aagccatgaa tcctactttt
     5761 tcttggtgac tgcgtgctgt gaaactgtct tcctacctgc aatgacagct catttccact
     5821 aacctatatt tggacaaaaa tcacctgtct gattttaatt aagccattgg atggcttaat
     5881 taattgactt tcatactgct gtatggtgtg agggcaactt tatgctcgtt caaatgatct
     5941 gtgctttacc tggtttctgt gcgtcagaat cgtccaaaag tacactgcat attgatgtcc
     6001 agtttaagat caccctttga aagtcagtag catttcctca ttcttttgtt tatgtgttgc
     6061 ccacatgagt ttataggtac tacaggagta tgtggcaggg gagatcagaa gacagggctg
     6121 gctcccctgt agttggaggc agttgtgagt cacctgttgt gactgctggg aactgagtct
     6181 gggtcctcag caacagtggt gtatccattt actcttctgt ttcgatggta aaatatccaa
     6241 acctaagtct tttccagtcc caagtttttg ttgttgctgt tgttgttttg gtccgtattt
     6301 tattgcaaca gaaagtaaac tacaaaaaac aaacaaacaa acaaaaaaac caaaaaaacc
     6361 ccccaaaaac ccaaaacaaa caaacaaaca aacaaacaaa caaaaaacag cgagccatct
     6421 ctccagcccc tcgatagcat tttctgatca gtgaattatg tttcccaacc actaaaaaac
     6481 aaaacaaaac aaaacaaaac tctaaagact gactattgcg agtaactgat catccttttt
     6541 ctgttaaaat actaaataaa gtattcactt acttgatagt a
//
