LOCUS       XM_017595974            3813 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 560 (Zfp560),
            transcript variant X1, mRNA.
ACCESSION   XM_017595974
VERSION     XM_017595974.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017595974.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017595974.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3813
                     /gene="Zfp560"
                     /note="zinc finger protein 560; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 long SRA read, 28 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 89 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100359967"
                     /db_xref="RGD:2323078"
     CDS             286..2538
                     /gene="Zfp560"
                     /codon_start=1
                     /product="zinc finger protein 345 isoform X1"
                     /protein_id="XP_017451463.1"
                     /db_xref="GeneID:100359967"
                     /db_xref="RGD:2323078"
                     /translation="MMEAISLSHGLFSRNPGYFHNEKTEMEKRVSDCWTNSYQESVTF
                     EDVAVDFTQEEWILLDTKQRSLYREVMLEIYQNLATLGCQLIKSRSSSCLEAEELRVV
                     ERRVQQEQAMQLNTRGTMFQQDIFQLKISDEIQLSNSHNGKELCDIKPPGEIIKDTSC
                     SRTHIGIESTASIYDGGQYEQVFPTLPKETSSADSSRELEQYGKDFSMTASTAYQTTC
                     VQNNFLESSEFQQSSLQRPGKSHNEDKLFNWVQCGDTFRPVMSHAENAQIYTGKKSYE
                     CKECGKSFKYSANLNIHMRSHTGEKPYQCKECGKAFSRCYPLTQHLKTHTEEKPFECK
                     VCGKCFRNSSCLNDHFRVHTGIKPYKCKDCGKAFTGRSGLSKHLPTHTGEKPYECKEC
                     GKAFTSTSGLIKHMKSHMGERPFECDHCGKAFASSSTLITHLRTHTGEKPFECKVCGK
                     AFACSSYLRIHMRTHTGEKPYVCKECGRAFTERTSLTKHLRTHTGENPFECNVCGKAF
                     ACSSYLHNHIRTHTGEKPYVCKECGKAFTVSSHLSKHIRIHTGEKPHKCEECGKAFTV
                     RSGLTKHIRTHTGEKPYNCKECGKAFTTSSGLLEHMRSHTGEKPYECDQCGKAFASSS
                     YLIAHLRIHTGEKPFECKECGKAFTCSSYLHIHMRTHTGEKPYDCKECGKAFAVYSHL
                     SKHVRIHGGEKAYTCKSDGIVFNHSHCKEHIKNLEINSLVGRNEETALERSIALAVHP
                     NSQWQERLSV"
ORIGIN      
        1 gttaccttcc gactcttccg gcgcgggctc tagggcttgg agttccgttg ctcctcagag
       61 gctgtacccg caggcggctt gggagaggtg ggttcggccc ctcagcggtt gcacttccta
      121 ggtctgtgcg gcccagcgcg acaggaacct gcgctgtgct gttgtttctc agactatttt
      181 taggaatagg cggatcggcg cgttcaggta acaattgatg atgaatgatc catgtcttca
      241 agaatgcaag taacactgta gagagaggaa agctcatcag tggccatgat ggaagccatc
      301 agtttgtccc atggcttatt ttctaggaac ccaggctact ttcataatga aaagacagag
      361 atggaaaaga gggtgtctga ctgctggaca aacagttacc aggagtcagt gacttttgag
      421 gatgtggctg tagacttcac ccaggaggaa tggattttat tggacacaaa acaacggagc
      481 ctttacagag aggtgatgct ggagatctac cagaaccttg ccacattagg atgtcagctc
      541 atcaaatcca gatccagctc ttgtttggag gctgaagagt tgagagttgt cgaaagaaga
      601 gttcaacaag aacaggctat gcaacttaac accagaggga caatgtttca gcaggatatt
      661 tttcagttaa aaatatcaga tgagatacaa ctgtcaaata gccacaatgg aaaggagctc
      721 tgtgacatta agccacctgg agaaatcatc aaagacactt catgcagtcg gacacacata
      781 ggtattgaaa gcacagcgag catttatgat ggtggtcagt atgaacaagt ctttcctacc
      841 ctgcctaagg agacctcctc tgcagacagc agtcgtgaat tagaacagta tggaaaagac
      901 ttcagtatga ctgcaagtac tgcttaccag acaacatgtg tgcaaaacaa cttccttgaa
      961 tccagtgaat ttcagcagtc atcccttcag aggcctggga aaagtcacaa tgaagacaaa
     1021 ctctttaact gggtacagtg tggtgatact tttaggccag tcatgagtca tgctgagaat
     1081 gctcaaatat atactgggaa aaaatcgtat gaatgtaagg aatgtgggaa aagttttaaa
     1141 tattctgcca accttaatat tcatatgcgt tctcacactg gagagaaacc ttatcaatgt
     1201 aaggaatgtg gcaaggcctt ttctaggtgt tatccactaa ctcagcactt aaaaactcac
     1261 actgaagaga agccctttga atgtaaggtt tgtggaaaat gctttagaaa ttcctcatgt
     1321 cttaatgatc actttcgggt tcacactgga ataaagccct ataaatgtaa ggactgtggc
     1381 aaagctttca cagggcgttc tggtcttagt aagcatttac caacacatac aggagagaag
     1441 ccttatgaat gtaaggaatg tgggaaagcc ttcacttcaa cctcaggact tattaaacat
     1501 atgaaaagtc acatgggaga gagacccttt gaatgcgacc actgtgggaa agcctttgct
     1561 tcttcctcaa cccttattac acatttgaga acacacactg gagagaagcc cttcgagtgt
     1621 aaagtatgtg gaaaagcctt tgcgtgttct tcttatcttc gcattcacat gcggactcac
     1681 actggagaga agccctatgt atgtaaggag tgtggtagag ccttcactga gcgcacaagc
     1741 cttactaaac acttacgaac acacactgga gaaaatccct ttgagtgcaa tgtgtgtgga
     1801 aaagcgtttg catgttcttc ctaccttcat aatcacatac gaactcacac tggagagaag
     1861 ccttatgtat gtaaggaatg tggaaaagcc ttcactgttt cttcacatct aagcaaacac
     1921 atacgaattc atacaggaga gaaaccccat aagtgtgagg aatgtgggaa agcattcact
     1981 gtgcgttctg gtcttacaaa acatatacga actcacacgg gggagaagcc ctacaattgt
     2041 aaagagtgtg ggaaagcctt cactacatcc tcaggcctcc ttgaacacat gagaagtcac
     2101 acaggagaga agccatacga gtgtgaccag tgtggaaagg cctttgcttc ttcctcctat
     2161 ctaattgcac atttgagaat tcacactgga gagaagccct ttgagtgtaa ggagtgtggg
     2221 aaagcattta catgttcctc ctaccttcat atccatatgc gaactcacac tggagagaaa
     2281 ccctatgact gtaaggagtg tgggaaagca tttgctgttt actctcatct aagtaaacat
     2341 gtaagaattc atggtggaga gaaagcctac acatgtaaaa gtgatggaat agtgttcaat
     2401 cattctcatt gtaaagaaca cataaaaaat cttgagataa attctttggt tggaaggaat
     2461 gaagagaccg ctttggaacg ttctattgct ttagcagtgc atccaaattc acagtggcaa
     2521 gaaaggttat cagtgtaagc catttgtaaa gtgattattt tcatagttga cttcaaagac
     2581 atgaaagcag tcatgttgca aagatgcctc acgaacctaa agaatgtggg aagtgatcag
     2641 aatgctcaaa acacatttca aacaaactca ttttgaagct tcacaaaatc agaatcatgg
     2701 aaagccatct ctgtttcaat ggctttttat aagtatgttg tatgaaacta ttgacacaca
     2761 atgtcaatat ttctgcccat ttctttgacg attactcata gtaccccagt ggaggacttt
     2821 gtgaaagtaa aaaatgttgg aaagtaatgg ttcaataaag tgactcacat ttgggaaact
     2881 tcatgtatag aatatggcga ttgtttctat gtcttaagat cttgtatact agcagaaaca
     2941 cagctttttt ggtagttgta taagcttatt ttggccattt tttgcatttt caatatttaa
     3001 gatattttta atatttgtat ataatgactt tccagtttta aaatttattt aagatgtaca
     3061 aaattccatg gaatatctcc tgaaataatt attagactaa ttaaaatgtg atacagtaac
     3121 tgggttttgt tattatgaag cactttttac tatctcagaa atttcaggta ctgcacatta
     3181 ttaactgtat ccaccaattg tactcttaag ttgctcattt tgtaattgaa actttatacc
     3241 ctttaacagt aactcataaa cattaactag ttaaagacag gctctcgctg tttagctctg
     3301 gaattcactg tgtaaactag cctggctttg aactcacaga gattctctgc ctcccaagtg
     3361 ctgggattaa atgcatacat tgccatgccc aactacagtc catatttaaa taaggtaata
     3421 tattgttttt agtttctgtg tgtctggctt attttcacat aacaaaatgt cttttagttt
     3481 catctctgtt gtcttgcatg acatactttc ctttaaaaaa tagaaacaag aggggtagat
     3541 acctggagcc aagcctgctt acacaactgt ctcgggaatg tttgagaaat atcaagccca
     3601 cttaaaccct tttactagcc agttgtctgt tcttatcact tttacagttt ctgtctccag
     3661 ccatctgttc ttatcagtct agacctgcaa cttgtggttt agggatatag ggagggtggt
     3721 gacggtagtg gaattggtcc tgggtccaat tcctacctgc ttgtctttat aagccgctgt
     3781 tttttaaatt aaagtttgag agcttgatca gaa
//
