LOCUS       NM_001107458            6234 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 541 (Zfp541), mRNA.
ACCESSION   NM_001107458 XM_001074162 XM_008759028 XM_217807
VERSION     NM_001107458.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6234)
  AUTHORS   Choi,E., Han,C., Park,I., Lee,B., Jin,S., Choi,H., Kim,D.H.,
            Park,Z.Y., Eddy,E.M. and Cho,C.
  TITLE     A novel germ cell-specific protein, SHIP1, forms a complex with
            chromatin remodeling activity during spermatogenesis
  JOURNAL   J Biol Chem 283 (50), 35283-35294 (2008)
   PUBMED   18849567
REFERENCE   2  (bases 1 to 6234)
  AUTHORS   Choi,E., Lee,J., Oh,J., Park,I., Han,C., Yi,C., Kim,D.H., Cho,B.N.,
            Eddy,E.M. and Cho,C.
  TITLE     Integrative characterization of germ cell-specific genes from mouse
            spermatocyte UniGene library
  JOURNAL   BMC Genomics 8, 256 (2007)
   PUBMED   17662146
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Aug 7, 2019 this sequence version replaced
            XM_008759028.2, NM_001107458.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26643293.1549.1, SRR26360181.1345355.1
                                    [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5760383, SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                JAXUCZ010000001.1  85878424-85878444
            22-171              JAXUCZ010000001.1  85879408-85879557
            172-574             JAXUCZ010000001.1  85889032-85889434
            575-815             JAXUCZ010000001.1  85893425-85893665
            816-2667            JAXUCZ010000001.1  85895049-85896900
            2668-2726           JAXUCZ010000001.1  85898393-85898451
            2727-2886           JAXUCZ010000001.1  85898774-85898933
            2887-3205           JAXUCZ010000001.1  85900513-85900831
            3206-3269           JAXUCZ010000001.1  85906770-85906833
            3270-3412           JAXUCZ010000001.1  85907311-85907453
            3413-3516           JAXUCZ010000001.1  85907754-85907857
            3517-3592           JAXUCZ010000001.1  85909235-85909310
            3593-3681           JAXUCZ010000001.1  85909754-85909842
            3682-3822           JAXUCZ010000001.1  85911974-85912114
            3823-4004           JAXUCZ010000001.1  85912252-85912433
            4005-6234           JAXUCZ010000001.1  85912525-85914754
FEATURES             Location/Qualifiers
     source          1..6234
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..6234
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /note="zinc finger protein 541"
                     /db_xref="GeneID:308108"
                     /db_xref="RGD:1310756"
     exon            1..21
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            22..171
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            172..574
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     CDS             268..4173
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /codon_start=1
                     /product="zinc finger protein 541"
                     /protein_id="NP_001100928.2"
                     /db_xref="GeneID:308108"
                     /db_xref="RGD:1310756"
                     /translation="MEPYSLGEEGPLPSEGHLPSFSESQGLNCSDTLNRDLGPSTRDL
                     LYAGLSGLDLDPSLSTSDMPSEVLEDNLDTLSLYSGKDSDSVKLLEEYADSESQTSLQ
                     DLGLGTLKVPKEADEGGRATGSTRKGKRQHSSPQNPLLDCSLCGKVFSSASSLSKHYL
                     THSQERKHVCKVCSKAFKRQDHLTGHMLTHQKTKPFVCIEQGCSKSYCDYRSLRRHYE
                     VQHGVCILKEAPPEEESYGDPTHNHDVANQPPPSGLRSLGPPEARSPGSVLPNRDLLR
                     CIVSSIVHQKIPSPGPAVGSSDTEARSSACACPTSLGSSSCTPASTPVAPGTLGSEIP
                     EETHPPRKEAATEMFTAVQSRAAENSAPDPPESELESESPRLQRPSSLEGWPEGSSLP
                     ACLPLFRGHSVPSGSQPSSHNFQWLRNLPSCPKNKSSNVFMVHKPSAVASREGSEGGS
                     GPSSTPTSVEPSPSLGTSQEDLLPFPPALLKAPGEASSEVRQVAGEDETWAPKKCKPD
                     CESFPWQSPTELGLQDAQNPGGLPSDATPLFRQLFMKSQESLVSHEQMQVLQMIAKSQ
                     RIFSHTQVATAAAQRPGPEGKQSTLKPLQGPWPPQTLPPVPTVDSFQIGPGHSEPEGS
                     PVRRRKTMPAVSRETSPGGPRRDTKGGPKVASAPPSLTGPALHPSRNPDNSSLAKGTL
                     DLGDIIPSAGSRQSQLGGDEPSGTQLVGKQGQGENGLASGAMRGEKGPACPRGGGYRL
                     FSGHPRAQRFSGFRKEKVKMDVCCAASPSQVAMASFSSAGPLADPPRDMKSKLTIFNR
                     IQGGNIYRLPHPVKEESLAGGCHQPNGTPTDWMESKSTFVCKNCSQMFYTEKGLSSHM
                     CFHSDQWPSPRGKQEQQGQEKDGEERDSKESSQYRKRKKRPQPKALFAPPAPSALGEP
                     GPGGCHQSCLRSPVFLVDHLLKGLFQCSPYTPPPMLSPIREGSGLYFNTLCSTSRAGP
                     HLVSPVLDQVDGSFGICVVKDDTKISIEPHINVGSRFQAEIPELQERPLTRVDENVAS
                     LVWKPWGDVMTNPETQDRVMELCNVACSSVMPGGGTNLELALHCLHDAQGSVQVALET
                     LLLRGPQKPRTHPLADYRYTGSDIWTPMEKRLFKKAFCAHKKDFYLIHKTIQTKSVAQ
                     CVEYYYIWKKMVKFDCGRAPGLEKRGRRELDEVERTEDKVTCSPRERPTHRPTPELKI
                     KTKSYRRESILHSSPSAAPKRTPEPPGSVESQGVFPCRECERVFDKIKSRNAHMKRHR
                     LQEHVEPVRVKWPVKPYPLKEEEEEEEEELGADMGPLQW"
     exon            575..815
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            816..2667
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            2668..2726
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            2727..2886
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            2887..3205
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            3206..3269
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            3270..3412
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            3413..3516
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            3517..3592
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            3593..3681
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            3682..3822
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            3823..4004
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
     exon            4005..6234
                     /gene="Zfp541"
                     /gene_synonym="Znf541"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgcgagcc cccgggggcg gggcaaaaga tattggatga gttttcaaaa atgaccacct
       61 cacccttcca ggaggagata ctgaaggcct gattaccacc tgaaacccct tcccagtgga
      121 gcctaagcca ggttctcctg tttcctggag agtcactcac ttgcttttct ggagctagct
      181 gccagcaagg gctctccctt cctgactctg gacacgactt cgcttgtctg gagacgggct
      241 ctagccagga cctggcagtg gaaagccatg gagccataca gtcttggaga agagggacca
      301 cttccatcag aagggcacct cccatccttc tctgagagtc aagggctcaa ctgcagtgac
      361 acactcaacc gggacctggg ccccagcaca cgggacctgc tctatgctgg cttaagcggt
      421 ttggaccttg accccagtct ctccacatca gatatgccca gtgaagtgct ggaggacaat
      481 ctggataccc tgtccctata ctcagggaag gacagtgact ctgtgaagct gctggaagag
      541 tatgcggact ccgaatcaca gacctcctta caagacctgg ggctgggcac actcaaggtg
      601 cctaaagagg ctgatgaagg aggcagggcc actgggagta caaggaaagg caagcggcag
      661 cacagttccc ctcagaatcc actcctggac tgcagcctgt gcgggaaagt gttcagcagt
      721 gccagttccc tgagcaagca ttacctgacg cacagccagg agaggaaaca cgtgtgcaaa
      781 gtctgcagca aggccttcaa gcggcaggac cacctgactg ggcacatgct cacccaccag
      841 aagaccaagc cctttgtgtg cattgagcag ggttgcagca agagctactg tgactaccgc
      901 tcactgcgcc gccactatga agtccagcat ggagtatgca tcctgaagga ggctccacca
      961 gaagaggagt cctatgggga cccaacccac aaccatgatg tggccaacca gcctccaccc
     1021 agtggcttga ggtccctggg gcccccagaa gctaggtccc caggctctgt cttgcccaac
     1081 cgagacctcc tccgctgtat tgtgagtagc atcgtccacc agaagattcc ttctcctggc
     1141 ccagcagtgg ggtcttctga tactgaagca aggagctcag cctgtgcctg ccccacctca
     1201 ttggggtcat catcatgtac accggccagc accccagtgg ccccaggaac cctgggctct
     1261 gagattcctg aggaaactca tcccccacga aaggaagctg ccactgaaat gttcacagct
     1321 gtccagtcaa gagcagctga gaacagtgcc cctgatccac cagagtcaga gttagagtca
     1381 gagtctccac gacttcaacg gccatcctct ctggagggct ggccagaggg cagctccctg
     1441 cctgcctgcc tgcctctctt tagaggccac tctgtcccct caggatccca gccttccagc
     1501 cacaacttcc agtggctccg gaacctgccc agctgtccca agaacaaaag cagcaatgtg
     1561 tttatggtcc acaagccctc tgcagtggca tcccgggagg gctctgaggg gggctctggg
     1621 cccagcagta ccccgacctc agtggagcct tcacccagcc tgggcaccag ccaggaggac
     1681 ctgctgccat ttcctcctgc actcctaaag gcccctggtg aggcctccag tgaagtccgg
     1741 caggtagctg gggaagatga aacctgggct cccaaaaagt gcaaacccga ctgtgagtca
     1801 ttcccatggc agagccccac tgagctaggg ctccaagatg cacagaaccc aggtggactc
     1861 ccctcagatg ccacacccct cttccggcag cttttcatga agtcacagga gtctctggta
     1921 agccatgagc agatgcaggt gctccaaatg attgccaagt cccagcggat cttctcccat
     1981 acccaggtgg ctacagccgc agcccagaga ccagggcctg agggcaagca gtccactctg
     2041 aagccattgc aggggccatg gccaccacaa actctgccac cagtacccac tgtagactct
     2101 ttccagatag gccctggaca ctcagaacca gagggatccc cagtccgcag gaggaaaacc
     2161 atgcctgcag tgtccagaga aacatctcct gggggcccta ggcgagacac aaaaggaggc
     2221 cccaaagtgg cctctgcacc accatccctc acagggccag ctctgcaccc ctcccggaat
     2281 ccagacaact cttccttggc caaagggacc ttggacctgg gagacattat ccccagtgcc
     2341 ggctcaaggc agtcccagtt aggtggagat gagccatctg gaacccagct ggttgggaaa
     2401 caggggcaag gagagaatgg cctggcttca ggggccatga gaggtgagaa gggcccagcc
     2461 tgcccccgag gtggaggcta caggctcttc tcagggcacc ccagggccca gagattctca
     2521 ggtttccgga aggagaaagt aaagatggat gtgtgctgtg cagcttctcc cagccaagtg
     2581 gccatggcct ccttctcatc agccgggccc ctggcagatc cacccagaga catgaagtcc
     2641 aagctgacaa tcttcaacag aatccagggt ggaaacatct acagactccc ccatccagtg
     2701 aaggaagaga gcttggcagg cggatgccat cagccaaatg ggactcccac agattggatg
     2761 gagtcaaaga gcacttttgt gtgcaagaat tgcagccaga tgttttacac agagaaaggg
     2821 ctgagcagcc acatgtgttt ccatagtgac cagtggccat cacctcgagg gaagcaggag
     2881 caacagggac aagaaaaaga cggggaagag agagacagca aggagagcag ccaatacaga
     2941 aagaggaaga agcggcccca gcccaaggcc ctgtttgccc ctcctgcacc ctctgccctt
     3001 ggggagccag gcccaggagg gtgccaccag agctgcctac gctctcctgt gttcctggtg
     3061 gaccacctcc tcaagggctt gtttcagtgt tctccctaca caccaccacc tatgcttagc
     3121 ccaattcgtg agggctccgg gctgtacttc aatacactct gctccacatc cagggctggg
     3181 ccccaccttg tcagccctgt acttgaccaa gtggacggct cctttggcat ctgtgtggtg
     3241 aaggatgaca ctaaaatcag catcgaacca catatcaacg taggaagcag atttcaggcg
     3301 gagatcccag aactgcaaga gaggccgctg accagagtag atgagaatgt agcttctctg
     3361 gtctggaagc catggggaga tgtgatgacc aatccagaga cccaggacag agtgatggaa
     3421 ctctgcaatg tagcatgctc cagtgtgatg ccaggagggg gcaccaacct ggagcttgcc
     3481 ctgcactgcc tgcatgacgc ccagggcagt gttcaggttg ccctggagac tctgttactc
     3541 agaggacccc agaagccccg gactcacccg ctggctgact atcgctatac agggtcagac
     3601 atctggaccc ccatggagaa gaggctcttc aagaaggcat tctgtgccca caagaaggac
     3661 ttttacctga tacataagac gatccagact aaaagtgtag cacagtgtgt tgagtactac
     3721 tacatctgga aaaaaatggt taagtttgac tgtggccgag ctcctgggct ggagaagagg
     3781 ggcagaagag agctggatga ggtagaaagg actgaagaca aggtgacttg cagccctcga
     3841 gaaagaccca cccaccgtcc aactcctgaa ttaaagataa agaccaagag ttacaggagg
     3901 gagtctatcc ttcactccag cccaagtgca gcccccaagc gcactcctga gcctccaggg
     3961 agtgtggaga gccagggcgt gttcccttgc agagagtgtg agagggtgtt tgacaagatc
     4021 aagagtcgga atgcccacat gaagcgccac cgcctccagg agcatgtgga acccgttagg
     4081 gtgaagtggc ctgtgaagcc ctacccactg aaggaggaag aggaagaaga ggaagaagag
     4141 ctgggggccg acatgggtcc cctgcagtgg tgacttcttg ctagaagttg gtctgcaagg
     4201 agaggggatc cagctctgaa ccagtgccct gagcccccga gaagtgtttg gggcactctt
     4261 atcctctctg tcctctcact tctagccttg ctagcgagtt tggctagcat ttggacatga
     4321 acaggcagaa gctctcaagg tagctctgaa gtcatgtggg taaccagagg ctctattctc
     4381 tcctggttaa tagttgctta cttgcagtcc cagtcacttg gagcagggga ccctaggaag
     4441 cagaaggttt ggtctaggtg gcatttagcc ctgagctgta ggcatgggac tgacattggt
     4501 tagagacaat cagtaaggac acctgagata cagtgagctg ggccctcctt ggggcagggc
     4561 ctccctgcat tcccaccatc cctagtcttg caatgactgt atattgttag gtgtattttt
     4621 tacatgtctg cttgtatctt attaaattgg gttcttaaag agctgtcttc caactcctaa
     4681 gcctgtgtgc tctgcagaag cttcagggcc atagcagggg ccaggaagtg agcagagaga
     4741 ggagagaagg tgggcacagt cagctgtgct cggtttagca gcacacggca gttcttctga
     4801 gtctgtagat gggcatacac acacaacagt gaaagcccct tcatcataga gcttcatttt
     4861 aggaggggtc ttgtagcagt tgtgaataag cacacaggtg agaaggtagt gacaggaggc
     4921 atgatctggc catgataatg gggtcggtta gactgaagct agaaaagcat gtgtggctgt
     4981 agctgctcaa cctgaaatga aggagaagga ccttgtcagc aggcagcctt gtcagaatga
     5041 tgccatatca ggtcagagac atctatacga accccaactt gcaagagcca tgccttgcct
     5101 cctgtgttcc agggccccat cccagcacta cagaaagggt ctcaacatct cagctaaagc
     5161 ttgaaggcag caggggtggg ggttgatttt ggagctgttg agacatcctg tttgagggaa
     5221 atgaggggta cagggcagcc caggaaccag aatggctctc ttccttccta cctgaacatt
     5281 ttttcccaat gtgtgtagtg ggtaaatgag gaaatgcact tttcttggtg ggcattccca
     5341 gtgacatgag cattgctttg cagtgagcat tccactgctc taccctgaag gacccaactc
     5401 catgagtgga agcagctggc cttatgggtt gagggtatat agtcatctat tgctgcacag
     5461 ctcattgttc caaaaagatg agaccatgca gcaaatggaa ggggaaccat aactgcttgt
     5521 ggccctccag actcaccagc tccggggtca gagcacagtc gggagcacag gtatatttgg
     5581 gaaagtgctc aatgggaagg aggtgggggt ggggagatgt cttttgcctt ttcctgaccc
     5641 ccaacactca actcacataa cactttcctc aaatgttctc tgctaatcag taaacttcag
     5701 taaagaagaa atacagattc ttgcaccaca gcacactgtt gggactgaaa tcgctgtgca
     5761 cagggcctta gaataacgag atttacagaa aactagcata gtaccaaaag ttctcacata
     5821 gccagtttct cttatagtaa gatgttgctc ttactatagt gtagtgtatt tactacagct
     5881 actgaaccac tatcaataac tgcccatgct ttatttagac ttttttttca ctaattttta
     5941 acaatgttta atgtgtaggc caggggttga tgtcgggagt cttcttcagt tgttctgcat
     6001 cttatttttt gaaaccaggt ctctttctga ccctggagct cattgattct gccagacttg
     6061 ctggccagca agctccaggc atatgcctgt ctcccactca cccattcctg ttacagctac
     6121 acgctgacac acccagcttt ttacatgggt ctgggtatcc agtgccattc tgtgtgtggc
     6181 actgcaaaat attctaaacg cgttgtgtgc gtaggttaga gaacagtttg gagg
//
