LOCUS       NM_001107467            2095 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus zinc finger protein 54 (Zfp54), mRNA.
ACCESSION   NM_001107467 XM_001054427 XM_218037
VERSION     NM_001107467.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC168865.1.
            
            On Sep 4, 2008 this sequence version replaced NM_001107467.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168865.1, CK603980.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..2095
                     /gene="Zfp54"
                     /gene_synonym="Zfp51"
                     /note="zinc finger protein 54"
                     /db_xref="GeneID:308232"
                     /db_xref="RGD:1307738"
     exon            1..103
                     /gene="Zfp54"
                     /gene_synonym="Zfp51"
                     /inference="alignment:Splign:2.1.0"
     exon            104..195
                     /gene="Zfp54"
                     /gene_synonym="Zfp51"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..1926
                     /gene="Zfp54"
                     /gene_synonym="Zfp51"
                     /codon_start=1
                     /product="zinc finger protein 51"
                     /protein_id="NP_001100937.1"
                     /db_xref="GeneID:308232"
                     /db_xref="RGD:1307738"
                     /translation="MADSSVNTSQCLLTFRDVAVDFSQEEWECLASPQRALYIDVMLE
                     NYSNLVSVENYCICDTVCQPVKTERESCQCNELGKMLHDPSHGGLYKRSDTTETSNNY
                     RCCKDRDVSVDSSNPDQHKSTHTGEEPCTSEDCEKSFDLCSNITQDQTFYTEEKEHRQ
                     EKHDDHFSSTYSLMQQSIYIGANAGQCVKYGKCFSIASSLSIQQRIDTGNKPYKCNIC
                     DKSFTQCSSLKTHRKTHQRLRAGTKPYKCSDCEKSFSYLSALKSHQKRHTGEKRYKCK
                     ECDKSYAYRTGLKRHQKIHTAKERYSCQHCGKVFHQLSHFKSHFTVHSAEKPYKCNEC
                     HRSFPHYVFFRRHKKNHSLQKSHKCKECGKSFFILSHLKTHYRIHTGEKPYKCTECDK
                     SFTQYSHLRRHQRIYTGKKLYRCEVCDKWFTMSSSLSRHQKIHTEAKTYKCKDCDIFF
                     THYSSLRRHQRVHTGEKHTCKQCGKSFTRGSTLRAHQRIHTGEKPYKCSKCDKSFIQA
                     SQLRTHQRVHTGERPYVCKECGKSLTTCAILRAHQKIHTGEKPYKCMECGKSYIQYSH
                     LKRHQKVHTGEKHTIVNNVT"
     exon            196..322
                     /gene="Zfp54"
                     /gene_synonym="Zfp51"
                     /inference="alignment:Splign:2.1.0"
     exon            323..2074
                     /gene="Zfp54"
                     /gene_synonym="Zfp51"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaactgga caagggtgag gtgtttcctc tgctactcac aaagatgaca gctctcaaat
       61 tctgcagtac atgtcttacc cttgtccata aatttagaat atagttcaca agctgactat
      121 tcactgttct tcaaagagaa gatcaaagaa gagaaacagc aagaaatggc tgattcttca
      181 gtcaacacgt cccagtgtct gttgacattc cgggatgtgg ctgtggactt ctcccaagag
      241 gagtgggaat gtctggcctc tcctcagagg gctttgtaca ttgatgtgat gttggagaat
      301 tacagcaacc tggtctctgt tgagaactac tgcatatgtg atactgtctg tcaacctgtg
      361 aagactgaaa gggagtcctg tcagtgtaat gagcttggta aaatgcttca tgatccctct
      421 catggtggac tttacaaaag aagtgacacc acagaaacct ctaataacta cagatgctgt
      481 aaggacaggg atgtctctgt tgactcatca aacccagatc aacataaaag cacgcacact
      541 ggggaagaac cttgcacatc tgaagactgt gagaagtctt tcgatttgtg ttccaacatt
      601 actcaagatc agacattcta cactgaagag aaagagcaca gacaggaaaa acatgatgac
      661 catttcagct ctacatacag tctcatgcaa cagtcaatct acattggagc aaatgcaggc
      721 cagtgtgtaa aatatgggaa atgtttcagt attgcttcaa gcctcagtat acagcagaga
      781 attgatactg gaaacaaacc ctacaagtgc aatatttgtg acaaatcttt tactcagtgc
      841 tcaagtctta aaacacatcg taaaacacat caaagacttc gtgctgggac aaaaccttac
      901 aaatgcagtg actgtgaaaa gtctttctct tatttatctg cacttaaaag tcatcagaaa
      961 aggcatactg gagagaagag gtacaagtgt aaggaatgtg acaaatccta tgcctaccgt
     1021 actggtttga agagacatca gaaaatccat actgcaaagg aacgttatag ttgtcaacac
     1081 tgtggcaagg tctttcatca gctctcacac ttcaaaagcc atttcacagt ccattctgca
     1141 gagaagcctt acaaatgcaa tgagtgccac agatcctttc cccattatgt attcttcaga
     1201 aggcataaga aaaatcattc tctacagaaa tctcacaaat gcaaagaatg tggtaagtcc
     1261 ttttttatat tgtcacatct taaaactcat tacagaatcc atactggtga gaagccttac
     1321 aaatgtacag aatgtgacaa atcctttacc cagtactcac atcttcgaag acatcagaga
     1381 atttatactg gaaagaaact ttacagatgt gaggtatgtg acaaatggtt tactatgtcc
     1441 tcaagtctca gcagacatca gaaaattcac actgaagcaa aaacttataa atgcaaggac
     1501 tgtgacatat tctttaccca ctactcaagt cttagaagac atcagagggt tcatactgga
     1561 gaaaaacata catgtaaaca gtgtggcaaa tcttttacta ggggctcaac tcttagagca
     1621 catcagagaa ttcatactgg agagaaacct tacaaatgta gtaaatgtga caaatccttt
     1681 atccaggcct cacaacttag aacacatcag agagttcata ctggagagag accttatgta
     1741 tgtaaggaat gtggcaaatc acttactaca tgtgcaattc ttagagcaca tcagaaaatt
     1801 catactggag agaaacctta caaatgtatg gaatgtggca aatcctatat tcagtactca
     1861 catcttaaaa gacatcagaa agttcatact ggagagaaac atacaattgt aaataatgtg
     1921 acatagcatt catctattat tctctctctg ttcaaatcct aacattatac ataatagaaa
     1981 tgtaagcatg agaaacatgg gaaaggcttt aaagtcttag aatgtttcac aaagtttgtc
     2041 aaaataaaaa tttccaaatg taattatgtg aaaaaaaaaa aaaaaaaaaa aaaaa
//
