LOCUS       NM_001030038            6783 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 518A (Zfp518a), mRNA.
ACCESSION   NM_001030038 XM_220019
VERSION     NM_001030038.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6783)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001030038.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099801.1, SRR26643429.5589.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                JAXUCZ010000001.1  249669686-249669733
            49-128              JAXUCZ010000001.1  249672005-249672084
            129-274             JAXUCZ010000001.1  249685209-249685354
            275-356             JAXUCZ010000001.1  249687496-249687577
            357-6783            JAXUCZ010000001.1  249687964-249694390
FEATURES             Location/Qualifiers
     source          1..6783
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..6783
                     /gene="Zfp518a"
                     /gene_synonym="RGD1305314; Znf518; Znf518a"
                     /note="zinc finger protein 518A"
                     /db_xref="GeneID:309478"
                     /db_xref="RGD:1305314"
     exon            1..48
                     /gene="Zfp518a"
                     /gene_synonym="RGD1305314; Znf518; Znf518a"
                     /inference="alignment:Splign:2.1.0"
     exon            49..128
                     /gene="Zfp518a"
                     /gene_synonym="RGD1305314; Znf518; Znf518a"
                     /inference="alignment:Splign:2.1.0"
     exon            129..274
                     /gene="Zfp518a"
                     /gene_synonym="RGD1305314; Znf518; Znf518a"
                     /inference="alignment:Splign:2.1.0"
     exon            275..356
                     /gene="Zfp518a"
                     /gene_synonym="RGD1305314; Znf518; Znf518a"
                     /inference="alignment:Splign:2.1.0"
     exon            357..6783
                     /gene="Zfp518a"
                     /gene_synonym="RGD1305314; Znf518; Znf518a"
                     /inference="alignment:Splign:2.1.0"
     CDS             485..4921
                     /gene="Zfp518a"
                     /gene_synonym="RGD1305314; Znf518; Znf518a"
                     /note="zinc finger protein 518"
                     /codon_start=1
                     /product="zinc finger protein 518A"
                     /protein_id="NP_001025209.1"
                     /db_xref="GeneID:309478"
                     /db_xref="RGD:1305314"
                     /translation="MPFEQTQLFCDEKQTILKKIDTRNEIPDTIKSIPIPKISEAGFH
                     YEPKNVNICLPKINIPNEILMKHEVEKYRKLFQSKPQTARKSVSVRTVSCAKGCAQRC
                     ESERAEDEAGKMCAKILNFTCSKCQDRTQYSPNDLQKHFEMWHHGELPSFPCEMCSFS
                     ASDFQIFKQHRKTHRNTFVKCDICNSERSYTLLDLTKHFTSKHCVNGNFQCEECRFFT
                     QDVGTFVQHIHRHKEVHYKCGKCHHLCFTKGELQKHLRVHSGTLPFTCHYCSYGAIHK
                     DQLVRHVITLHKEHLYAKEKLERDQYDKRVAKTTTGLKLILKRYKIGPTKTFWKRKTI
                     ASGNDESIGKNAQAFNIVSKTQTKSEDQSQEQLNEEKGGRQHCEDGDKPIESGSEKAT
                     VLSTGQCNKADEGASAPSSVLSAVQGPTVLLVRNNKITIPANYSAKFMGFKMVDGRQH
                     IVIKLLPANKQILPSPALQPNTEKESTANLPPQAMDNTGFATGLTAMNDTDFVKAAPL
                     SCSSPELPRKVISEKETAFISEKNNMLQMVDDSKSVTSLPTPSESVTSVRLTTKVEAR
                     DNVDLWENPSTQSHPDLIGTSINSPDKVNLTIRPNAYSCGDMHNYCINYVNSELPAES
                     SNCFEFSNQGSLPFHNYSKVNNKRRRFSRGAVCENLQRESSNKTVTQQSTSDSDTTSP
                     LRKESSNSDSLLASISPLSGTLKIKTEIEEPCDLEETQNFNEQSLFTNENQNLLNMTE
                     EPKWDDIPCAGSPMMPRITSVFSLQSEQASEFLPPEVNQLLQDTLKPRSDIKEDSNNI
                     PSKNLPLDCDQTLKKSKEEVIKSSKDFQMQDIISVPSASVGVNVPANDLNLKCNGQEK
                     QALSVLQDVRDPGVTTKIPSIITLLKTQSDAIITQQLVKDKLRTTTQHSGPVYVQNPL
                     LTSEQKNPVFVQTPKGFIIPLHVANKPGLHVFSGRPVPLVNTQSVPAALLVNKKPGVV
                     LTVNNGKPEGVPTVKTENVHSYGTVTKEPCRTPFLKAEHNRYCLTPGLCSSIGSCVNM
                     KTCSENTLPLKGSYIIKTSVSSSVKAVPFANVLPEQQGPNVNVLDAVKQQNESLPKAS
                     LYTLMPDGKQAVFFKCMMPNNTKLLKPRLVQNSTYQRIQPKRPAGAPQKILLKIFNPV
                     LSMSAVNNLSVGNSASSFQKEIVPSKPTVHGEQKVPQSSRDALPVSVQDLMPANEAVL
                     SSTAACPGSSEEPVHISERSETRVSRSKANCTIERNFNKRKTCKNKFAKIKTRISQDS
                     ETAFVSRNRSCKRKYIDNYQEPPRKKSATHRKCKERANAEDVQETFGFSRPRLPKDSG
                     RTLRLFPFNSEQLVKCPRRNQPVVVLNHPDADAPEVERVMKTITKFNGRVLKVSLSKA
                     TINALLKPVSITSETTYSDFSKRHKMLKPVNSVKERFVLKLTLKKTSKNNYQIVKTTS
                     EDVLKSKFNCWFCGRVFDNQDVWAGHGQRHLVEATKDWNMLE"
ORIGIN      
        1 gggtaatggc cgccatctgg gactcgcagg caatggggac cacgacagat accatctctt
       61 ttgctcactg tacctgactg tggcattgtc caagcattaa gttgtgtgcc tttgttcctg
      121 ggagaaagtt gatactagca gttcctcgtt cttcctggct tctggactca gttgaaaatt
      181 ctggattcct tttttctcat atgtcaccct gagccttctg tcctctaaag agctccaatc
      241 tgaccttcca ttcaagcctt ccgtctctcc caagggaaaa atccagtagt cgctaatgtc
      301 agtttatgct taatggtgtt ttatgcctct ggcacccatg agcaacctgt aatcaggtgc
      361 attgatttga ggaaaatcct ggttattttg aagatgttgc aactcagtat tttgtgttta
      421 aatcacaaat aacttcacaa gttttcagaa caaaagagac tggatttttt tttttaatta
      481 aatcatgcca tttgaacaga cacagctatt ttgtgatgaa aaacaaacta ttttgaaaaa
      541 aattgataca agaaatgaga taccagatac tatcaaatca atacctatac caaaaatttc
      601 agaagctggt tttcattatg aaccaaaaaa tgtgaacatc tgtttaccca agataaatat
      661 tccaaatgaa atcttaatga aacatgaagt tgaaaaatac agaaaactgt ttcagagtaa
      721 accacagact gcaaggaaat ctgtcagtgt gaggactgta agctgtgcca aggggtgtgc
      781 acagcgctgt gaatctgagc gcgcggaaga cgaggctgga aagatgtgtg caaagatact
      841 caactttact tgttcaaagt gccaagaccg cactcagtat agcccgaatg acttgcagaa
      901 acactttgaa atgtggcatc atggcgagct gccttcattt ccttgtgaaa tgtgtagttt
      961 ttcagcaagt gacttccaga tatttaaaca acaccgaaaa acccatagga atacttttgt
     1021 aaaatgtgat atttgtaaca gtgagcgttc atatacttta ttggacttga caaagcattt
     1081 cacgtctaaa cattgtgtta atggtaattt tcagtgtgaa gagtgtagat tctttaccca
     1141 ggatgtcggc acatttgttc agcacattca tagacataaa gaagtgcatt ataaatgtgg
     1201 aaaatgccat cacttgtgtt ttaccaaggg agagcttcag aagcaccttc gtgtccattc
     1261 tggtactctg cccttcactt gtcactactg tagctatggt gccattcata aagaccaact
     1321 tgtcagacat gttataacct tgcataaaga acacttatat gcgaaagaaa aactggaaag
     1381 agaccaatat gataaaagag tggcaaagac tacaacagga cttaaactaa tacttaaaag
     1441 atacaaaata ggtccaacaa agacgttttg gaaacgtaag acaattgcca gtgggaacga
     1501 tgaaagtata ggaaaaaatg ctcaagcatt taatatagtg agcaaaacac agactaaatc
     1561 tgaagaccag agtcaagagc aattaaatga ggaaaagggt ggaagacagc actgtgagga
     1621 cggtgataag cccatagaat cggggtcaga aaaggcaact gtgctatcca ctgggcaatg
     1681 taataaagct gatgagggag caagtgctcc ttcaagtgtc ttgagcgctg tacagggacc
     1741 gacggtgtta ctggtgagaa ataataagat aacaattcct gctaactaca gtgctaagtt
     1801 tatgggcttc aagatggtag atgggagaca gcatatcgta ataaaattgt tgcctgccaa
     1861 taagcagatt ttaccttcac cagccttaca gccgaacaca gaaaaggaga gtacagctaa
     1921 tttgccaccc caggccatgg acaacactgg atttgcaact ggattaactg caatgaatga
     1981 cacagatttt gtgaaagcag ctccactttc atgttcatcc cctgagcttc ccaggaaagt
     2041 aatttctgaa aaggaaacag ctttcatatc cgaaaaaaat aatatgcttc agatggtgga
     2101 tgacagtaaa agtgtaactt cattgccaac accgtcagaa tcagttacat cagtgcgttt
     2161 gactacaaaa gttgaagcaa gagataatgt tgacttgtgg gaaaatccca gcacccagag
     2221 tcatccagac ttaataggaa cctccattaa cagtcctgat aaagtcaacc ttactatcag
     2281 gccaaatgca tacagttgtg gagatatgca taactactgc attaattatg tcaactctga
     2341 gttacctgct gaatcctcca actgttttga gttctccaac caaggatcat taccttttca
     2401 taattactca aaggtaaata ataaacgccg taggttttca agaggagcag tgtgtgaaaa
     2461 ccttcagagg gagtcttcga ataaaacagt tactcaacaa tcaactagtg acagtgacac
     2521 aacttcacca ctgagaaagg agagctccaa ctcagatagc ctgttagcat ccatcagccc
     2581 tttaagtgga actttaaaaa taaaaacgga aattgaagaa ccatgtgatt tagaagaaac
     2641 acaaaatttt aatgaacaga gcctctttac taatgaaaac caaaatttat tgaatatgac
     2701 tgaagaacct aagtgggatg acattccctg tgccggctcc cctatgatgc cgcgaatcac
     2761 atctgttttc tctctccaga gtgagcaggc ttcagaattt ttgccacctg aagtaaacca
     2821 gttacttcaa gatacattaa aaccaagatc tgatataaag gaagattcta ataacattcc
     2881 cagtaaaaac cttccacttg attgtgacca aacacttaaa aaatccaagg aagaagtgat
     2941 aaaatcttca aaagacttcc aaatgcaaga catcatctca gttccttctg ccagtgtagg
     3001 tgttaatgtg cctgcaaatg atctgaattt aaaatgtaat ggacaggaaa aacaagcgct
     3061 gtcagtatta caagatgtga gagatccagg ggtgaccact aaaattccaa gtatcatcac
     3121 attactcaag actcagtcag atgcaataat aacacaacag cttgtaaaag acaaactccg
     3181 aaccacaaca caacattcag gtcctgtgta tgttcagaat ccacttctaa cctcagaaca
     3241 gaagaatcct gtatttgttc aaactccaaa aggttttatt ataccgttgc atgttgctaa
     3301 caagcctgga ttgcatgttt tctccggaag accagttcct ttggttaata cacagagtgt
     3361 acctgctgct ctccttgtaa acaagaaacc tggagtggtt ttgacagtta acaatgggaa
     3421 acctgaaggt gttcccactg ttaagactga gaatgttcat agttacggga ctgtgactaa
     3481 ggaaccttgc agaacacctt ttctgaaggc agaacacaac aggtactgtc ttacacctgg
     3541 actttgttcc agtattggca gttgtgtgaa catgaaaact tgctcagaga atacattgcc
     3601 actgaaaggt tcttatatta ttaaaacatc agtaagttct tcagtgaaag cggttccttt
     3661 tgctaacgtt ctacctgaac agcagggccc taacgtgaat gtcttggatg cggtaaaaca
     3721 acagaatgaa agtttaccca aagcatctct ctacaccctc atgcctgacg gtaaacaagc
     3781 tgtatttttt aagtgtatga tgccaaataa cactaaactg cttaagccta ggttagtcca
     3841 aaacagcacc taccaacgta ttcagccaaa gagacctgca ggagcaccac agaaaatact
     3901 cttaaagatt tttaatcctg ttttaagtat gagtgctgtt aataatcttt cagttggcaa
     3961 ctctgcatct tcattccaga aagagattgt accctctaaa ccaactgtac atggagaaca
     4021 gaaagtgcca caatcttcta gagatgcctt accagtctca gtgcaggatt tgatgccagc
     4081 aaatgaagct gtcctttctt ctactgcagc atgcccagga tcttctgagg aaccagtaca
     4141 tatcagtgag cgttcagaaa caagagtgtc aagaagtaaa gcaaattgta caattgagag
     4201 aaatttcaat aaaagaaaga cttgtaaaaa taagtttgca aaaattaaaa ctcgtataag
     4261 tcaagattct gaaactgcct ttgtatctag aaacagaagc tgtaaacgaa agtacattga
     4321 taattaccaa gaacctccaa ggaagaagtc agcaacgcat agaaagtgta aagaaagggc
     4381 taatgctgaa gatgtccagg aaacatttgg atttagcaga cctaggcttc caaaggattc
     4441 tggtagaact ttgagacttt tcccttttaa ttccgaacag cttgtaaaat gtcctaggag
     4501 aaaccaacca gttgtggttt tgaaccatcc tgatgcagat gccccagaag tagaacgtgt
     4561 aatgaaaact atcacaaagt ttaatgggcg tgtattgaag gtttcactgt caaaagcaac
     4621 tattaatgct ttactgaaac cagtttctat cacttctgaa acaacttaca gtgacttttc
     4681 caagagacac aaaatgctta aacctgttaa ttctgtgaaa gaaaggtttg tgctaaaact
     4741 aacactcaaa aagacaagca aaaataatta ccagattgta aaaactacct ccgaagatgt
     4801 cttgaaatct aagtttaact gttggttctg tggtagagtt tttgacaatc aggatgtgtg
     4861 ggctggccat gggcagagac atttagtgga agctactaag gattggaata tgttagaata
     4921 acttactgtg attaccaagg aaaggatagc ttagaagaag aatgggttgg tattgtaatt
     4981 caggcttttt ctacattggt atagttttga acatttctaa gagtcgatta tatttctgtg
     5041 gaagaacaaa gctttatatg tggtacttgg aaatgccaca attaacatat attttgaaag
     5101 aacgtaatta gcacagacct tgatttagtt gtataaagat gcatctgtgg gacagtaggg
     5161 gtaaggaaat ttttgacaaa agagttttct caattaaatt agagggtaat ggtggacagc
     5221 ccattccctt tcttctccca ccagccttgt agaactgaca agagtttctc tggaggtgga
     5281 gaaccttctc acaatggttt cctactactt gtaaagaagg actgagctta gataaagtta
     5341 ctttctatct atcatagttc atttgaaagg tattaagttt ctttgaaagc tacatcttgc
     5401 tggactgtag ttaaacttga aataatgctt gaagagtttg gggcaagtaa atcctgttgc
     5461 tgtgccctat atcagattgg aatgccctct caagatgatt gtctcttcct gtggctgtct
     5521 tgatcactgc agtaaatggg gcaatctcca gagaagaatc aaactttttc taaaatccac
     5581 ttgaatgtca acattttcct gaatttggtc ctatttccca gtgatcccct tgcacagaac
     5641 tatactatct gattggaagt gtccataacc aaatgacttt tttacctccc ttggttggca
     5701 tcccttcaaa atgagcagaa agaacataga agcatttgaa agggaatggc ttttcttcaa
     5761 aactaaaact atttttacag agataatatt ttgaagcaag gttaacaaag cagattatat
     5821 ttttgcttgt gtttaattac tgttctggcc taaacatgtc cacattaggc tagaccattt
     5881 tcaggacgac caacaaccca gaatagtgtt aatagttggt gtttgaaaat agagaagcaa
     5941 gcattaacaa tggactcagt agcagttcat aaaacttgaa aaattcctga gagacatgcc
     6001 caacaatttc aaagtggata ttttcataac aatccattaa tttaacctta cgatatacat
     6061 ttgcatcatt ttttgtctca ttggataatg aagttatatt aaaagatgat attctatgta
     6121 attttttgtt ttaatgttac tatacatgtt aatgacattt tcattgattg gatcaaaact
     6181 tcagggcttt ttttgtatat aacaaatgtg tacatatttt tgtacttgat tatgtaaatt
     6241 tgcacaagaa gtttatgaca caaaaagtat tttcttttta attctttgca tgcattaata
     6301 aaaatgggtg atttaaaaag aaaaaggact gtacccatgt tattttattg gtttttattt
     6361 ctgacttttt tttttttttt tttggttggg gacatacttt tttttttttt cagggattaa
     6421 acactattgt tagcaagtgc ctaaaaatga tgtgaaccgt ttacacatgc caactgtaac
     6481 agtaggtcct aaacgggccc attcccctaa tagttttgat ttaaacaaag ccataagtag
     6541 atgcttccag ctatattgct atgcacatta tacttgtact gtttctgtgc agtttatcta
     6601 ctttcttagt ggagtatttt tttgtataaa acctgttata attgtgtttc ttgaattgag
     6661 cctgagtgga attgattgga aatacacagt atatattaat aatgtacatg atgtttaaag
     6721 aatggtaagc attgttaatt tccttgttca ttattaatga aggttttctt caattaaact
     6781 taa
//
