LOCUS       NM_001271396            3688 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 496 (Zfp496), mRNA.
ACCESSION   NM_001271396 XM_220512
VERSION     NM_001271396.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3688)
  AUTHORS   Kahns,S., Losson,R. and Nielsen,A.L.
  TITLE     Nizp1 zinc finger protein localization is determined by SCAN-domain
            inclusion regulated through alternative splicing
  JOURNAL   Biochim Biophys Acta 1799 (8), 539-545 (2010)
   PUBMED   20538088
REFERENCE   2  (bases 1 to 3688)
  AUTHORS   Mysliwiec,M.R., Kim,T.G. and Lee,Y.
  TITLE     Characterization of zinc finger protein 496 that interacts with
            Jumonji/Jarid2
  JOURNAL   FEBS Lett 581 (14), 2633-2640 (2007)
   PUBMED   17521633
REFERENCE   3  (bases 1 to 3688)
  AUTHORS   Nielsen,A.L., Jorgensen,P., Lerouge,T., Cervino,M., Chambon,P. and
            Losson,R.
  TITLE     Nizp1, a novel multitype zinc finger protein that interacts with
            the NSD1 histone lysine methyltransferase through a unique C2HR
            motif
  JOURNAL   Mol Cell Biol 24 (12), 5184-5196 (2004)
   PUBMED   15169884
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FQ223523.1 and JAXUCZ010000010.1.
            
            On Sep 21, 2012 this sequence version replaced XM_220512.5.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ223523.1, SRR26643293.62992.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-713               FQ223523.1         3-715
            714-2885            JAXUCZ010000010.1  44768521-44770692   c
            2886-3612           FQ223523.1         717-1443
            3613-5784           JAXUCZ010000010.1  44768521-44770692   c
            5785-5859           FQ223523.1         3616-3690
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..3688
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /note="zinc finger protein 496"
                     /db_xref="GeneID:287361"
                     /db_xref="RGD:1304611"
     exon            1..52
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            53..249
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            250..355
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            356..783
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     CDS             394..2133
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /note="zinc finger with KRAB and SCAN domains 17"
                     /codon_start=1
                     /product="zinc finger protein 496"
                     /protein_id="NP_001258325.1"
                     /db_xref="GeneID:287361"
                     /db_xref="RGD:1304611"
                     /translation="MPTALCPRVLAPKESEEPRKMRSPPGENPSPQGEPPSPESSRRL
                     FRRFRYQEAAGPREALQRLWELCRGWLRLERHTKEQILELLVLEQFLAILPWEIQSWV
                     RAQEPESGEQAVAAVEALEREPGRPWQWLKHCEDPVVIDDGDGPAPQDLEQERMSAES
                     QSNPDALPGALAQDPGLLSRSPGQPSEDPVPQDAVLSQEQSVRDAQPVTTCQLPPNRV
                     SPFKDMILCFSEEDWSLLDPAQTGFYGEFIIGEDYAVSMPPNESPVQLGHSHEEENGL
                     RVTEWTDLQDKEAPQASCIDLQPFQGEERKKWEELQVPEPQSCQQVVLPPSPCPGGDP
                     PPLKNNLDQEVTIEIVLSSSGDEDSQHSPYCTEELRSPPENLHSLPAPQSNTRPGGEV
                     QSSQKSYVCPSCGKAFRWRVNFIRHLRSRREQKPHKCSVCGELFSDSEDLDGHLETHE
                     AQKPYRCTVCGKSFRLNSHLISHQRIHLQPDKQQPLKKNEEDSLETESTGTNDLLEKS
                     KAKLGFQCADCEKSFQRHDYLVRHRRHCHLKDETRPFQCRYCVKTFRQNYDLLRHERL
                     HMKRRSKQALNSY"
     exon            784..961
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1038
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1171
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            1172..1279
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..1384
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..3671
                     /gene="Zfp496"
                     /gene_synonym="Zkscan17; Znf496"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttccgcggc ggcccggcct gcgcggcccg ccaaccggga cgctgcgcag cggcgtctcc
       61 cttcgctccc aagcccagct gatgcattct agaggatcac gagacagggt tggcctggcc
      121 agggaccgag tctggcccat gcattggagc cgccttggcc aagacaccag agagaccgag
      181 ctggaaggtg aggatctgct cccctgctgt ccccaggctt cgaggtgaag agccagcgaa
      241 tctgaaagat tcaatttgtg aagacctcaa gaacagagac agtgactttg tctccaaagc
      301 gtccagatta tcgccgcctg gggctatatc ctccgggagg acctgcccat caaagggtcg
      361 tcttctgccg ctgaccctcc atcaaatccc atcatgccca cagccctgtg cccacgagtc
      421 ttggctccaa aggaaagcga ggagcccagg aaaatgcgga gtcctcctgg agagaacccc
      481 agccctcagg gtgagcctcc cagcccagag tcctctcgac gcctcttccg ccggttccgc
      541 taccaggagg ccgcaggccc tcgggaggcc ctgcagcgcc tctgggagct gtgccggggc
      601 tggctgaggc tcgaaaggca cacgaaggag cagatcctgg aactactggt gctggagcag
      661 ttcttggcta tcctgccgtg ggagatccag agctgggtgc gtgcccagga gcctgagagc
      721 ggagagcagg ctgtggctgc agtagaggct ctggaacggg agccagggag accctggcag
      781 tggctcaagc actgtgaaga ccccgtggta attgatgacg gtgatgggcc tgcgcctcag
      841 gatctagaac aagaacgaat gtctgcagag tcccagagca accctgatgc cctgccgggg
      901 gctctagcac aggaccctgg gctcctaagc agatcgccag gccagcctag tgaagaccca
      961 gttccgcaag atgctgtcct ttctcaggag cagagcgtca gggatgccca gccggtgacc
     1021 acctgccagc ttcccccgaa ccgagtttcc ccatttaagg acatgatttt atgcttctca
     1081 gaagaggact ggtcccttct ggacccggca cagactggtt tctatggaga attcatcatt
     1141 ggggaagact atgcagtctc tatgcctcca aatgagtctc cagttcagct gggccactca
     1201 catgaggagg agaacgggtt gcgggtcaca gagtggacag acctccagga taaagaagca
     1261 ccccaagcct cctgtataga cctccagcca ttccaaggag aggaaagaaa gaaatgggag
     1321 gagctgcagg tgccggagcc ccaatcctgc cagcaggtgg tgctacctcc aagtccttgt
     1381 ccaggaggtg acccaccgcc cctcaagaac aacctggacc aggaggtaac catcgagatt
     1441 gtgctgtcca gctctgggga cgaggactcc cagcacagcc catactgcac agaggagcta
     1501 aggagccccc cggaaaacct ccacagcctc ccagcccccc agagcaacac taggcctggg
     1561 ggcgaggtgc aaagctcaca aaagtcatat gtgtgcccaa gctgtgggaa ggccttccgc
     1621 tggagggtca acttcatccg ccacctgcgc agccgcaggg agcaaaagcc acacaaatgc
     1681 tccgtatgtg gggagctgtt cagtgacagc gaggacctgg atggacacct agagacccat
     1741 gaggcccaga agccctacag gtgcactgtc tgcggaaaga gcttccgcct caactctcat
     1801 ctaatctcgc accaacggat ccacttgcag ccagacaaac aacagccctt gaagaagaat
     1861 gaggaggatt cactggaaac agagagcacg ggtaccaatg acctgctgga gaagagcaaa
     1921 gccaagctgg gcttccagtg cgcggactgt gagaagagct tccagcgaca cgactatctg
     1981 gtgaggcacc gcagacactg tcatctaaag gacgagactc gtcccttcca gtgtcggtac
     2041 tgtgtcaaaa ctttccgaca gaattacgac ctcctccgcc atgagcgcct gcacatgaag
     2101 cggcgctcta agcaggctct gaactcatac tgagcagggt gtggccccac aagctagccc
     2161 ctgccccagc acagaaccct caccacctgc cctttgctct caggtagtgt ccaacttctg
     2221 gtgccatgcc tcttcctccc gagataaaaa gcagtcccct gagcattcct tccttctact
     2281 gtgccaaaac ccagggaggt aaggcaactc tagcctcaga tctacatctc agatgtccag
     2341 ctactcagcc actttctctg gccctcagag ggactgggct gtcccatccc agtgacttct
     2401 aggggtatgg tgtctacaat agggagctga ccaaaagcac tgacctatcc tcagaagtca
     2461 gcctggggtg actagccagg ggagcgtccc acaggtgcag atggccaggc cactgaccat
     2521 caggaggtca cattttaaaa gttcatgcat ctatccccac atgtcttctt tgtactccaa
     2581 gacccttcag aaacgtgtga tggaagctgc ctgtcaccaa gcacatccct ccccactctg
     2641 tctaggagtt gagagccttc aaggcgcttc tgctaggtaa gccaagccct ggaacagaag
     2701 cttctaaagt cttgtccttc atgggtagtg actcccaggc atttgcttta gtcctagcac
     2761 tgacataagt aactagtact aaacgtaggc tcttctaaca gcacgtggca ttgttacagt
     2821 tatggaattt gcaaggccaa ggtctggtgt cagtgggctg gttctctccg aagctagaag
     2881 agtgaatcct cttgggtctg atggtcactg acacttgtgt gtaccccagg gcttgtacaa
     2941 acatctctcc atctttgcct tcatctccac tgcgtcggtc tccaaactta ccttctgtac
     3001 aaggatccca gtctttgggt tggggctcac cctgtctact gtagcagagc cccaccttca
     3061 tctggagtgg ccatttccaa ataaagtcac atcctgaggt actaggagta aggacctcaa
     3121 cactggggtt tgagtggacg tagccaactc cagctaatcc cgtggtgctg ttgcattcct
     3181 gccttgggtg aaccagtgcg accttgcggc agcgtgcttg cattcctctg cgtgttgagc
     3241 tcggttgtct gctttcagac tgctgtcctc tctctgccaa ggagaatctt catccatggc
     3301 ctttaagttc aaagcctgag attctgggaa tggttgttgt taggaaacct aaagcaacca
     3361 aacatgtggt cccgcacact ggtgtcggcc aggctcaatg tcgctgtggc tggacctgac
     3421 tgcaggcagc cttgagctat aacagctctc acagtcagga ggtctgggaa aatgaattca
     3481 aggcctctgg tgctctctct cctgattttt tcacatcaag aagcctgtag tccagaccct
     3541 caaagactat aagactttat aacagtttct ttttctgctc agtgcattgc ccagaaatag
     3601 taaatgcaat aaaaccattt ggtcacatct tggagaagaa ataaactgtt gaagctctta
     3661 gtttctaaat aaaaaaaaaa aaaaaaaa
//
