LOCUS       NM_001399075            4514 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 46 (Zfp46), transcript
            variant 1, mRNA.
ACCESSION   NM_001399075 XM_006239150
VERSION     NM_001399075.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006239150.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.952734.1,
                                           SRR26360172.1352050.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-460               JAXUCZ010000005.1  153802887-153803346
            461-515             JAXUCZ010000005.1  153804671-153804725
            516-642             JAXUCZ010000005.1  153805430-153805556
            643-4514            JAXUCZ010000005.1  153809073-153812944
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..4514
                     /gene="Zfp46"
                     /note="zinc finger protein 46"
                     /db_xref="GeneID:298558"
                     /db_xref="RGD:1310584"
     exon            1..460
                     /gene="Zfp46"
                     /inference="alignment:Splign:2.1.0"
     exon            461..515
                     /gene="Zfp46"
                     /inference="alignment:Splign:2.1.0"
     CDS             483..1895
                     /gene="Zfp46"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein 436"
                     /codon_start=1
                     /product="zinc finger protein 436 isoform 1"
                     /protein_id="NP_001386004.1"
                     /db_xref="GeneID:298558"
                     /db_xref="RGD:1310584"
                     /translation="MAATLLMSGSQAPVTFEDMAMFLTREEWRPLDPTQRDLYRDVMQ
                     ENYGNVVSLDFEIRSENEANPKQEFSDDVEFATMSEEPLENAEKNPGSEEAFESGDRS
                     ERPWGDLTAEEWVSYPLQQVTDLLVHKEAHTGIRYHICSQCGKAFSQISDLNRHQKTH
                     TGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTG
                     EKPHKCTECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEK
                     PYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPY
                     HCNECGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIHTGEKPYEC
                     TECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTE
                     CDKSFSRSSALIKHKRVHTD"
     exon            516..642
                     /gene="Zfp46"
                     /inference="alignment:Splign:2.1.0"
     exon            643..4514
                     /gene="Zfp46"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttccctct ccaaggctac agcaagctgg gagcttgtcc ccacacagaa tccttgtttt
       61 gcttagccct cgccttccat tgtctaattc cttcattcca gctaaggaaa gggaatgcta
      121 gaagtccttc catttggaag actcttgccg aatgcagcat agccaatgct gatgtttctt
      181 ggccagctgc tgtggcctcg gagatctgtt tatgagattg ttatttccag gagctatata
      241 gaacagtctc tgcagtcttg aagcttcggg ttcatcttac aatcaaactg tcctttgcct
      301 gttaatctat ggattcggat ttctactcct ggcgctgaga tctctggaat ctgctggtga
      361 tatctagaat ctttctgaat gtcaggcctc tttagatctc tgaggcttta ggatctcagg
      421 cttctcaagg atcttggagc tagcgaccac agaccagaag gagacgaacg cttgagcccg
      481 agatggcagc caccctactc atgtctgggt cccaggcccc tgtgacattt gaagatatgg
      541 ccatgttcct cactcgggaa gaatggagac ccctggatcc tacacaaaga gacctttaca
      601 gggacgtgat gcaggagaat tatggaaatg tcgtctcact ggattttgag atcaggagcg
      661 agaatgaagc aaacccaaaa caagagttta gcgacgatgt ggaatttgcg accatgtcgg
      721 aagagcctct ggagaacgct gagaagaatc ctggaagcga agaggctttt gaaagtgggg
      781 accgatcaga aaggccgtgg ggagacctga cagccgagga gtgggtaagc tatcctctcc
      841 agcaagtcac tgacctgctt gtccacaagg aggcgcacac aggcatccgc taccacattt
      901 gttctcagtg tgggaaagcc ttcagtcaga tctcagacct caatcgccac caaaaaaccc
      961 acacgggaga caggccctat aagtgttatg agtgcgggaa gggcttcagc cgcagctccc
     1021 acctcatcca gcaccagagg acacacaccg gcgagcggcc gtacgactgt aacgagtgtg
     1081 ggaaaagctt cggaaggagc tctcacctca ttcagcacca gacgatccac accggggaga
     1141 agcctcacaa gtgcaccgag tgcgggaaaa gcttctgccg tctctcccac ctcatccagc
     1201 accagaggac ccacagcggg gagaaaccgt acgagtgcga ggagtgcggg aagagcttca
     1261 gccgcagctc ccacctcgcc cagcaccaga ggactcacac gggtgagaag ccttacgagt
     1321 gtaacgagtg tgggcggggc ttcagcgaga ggtctgacct catcaagcac taccgggtgc
     1381 acacggggga gaggccctac aagtgtgacg agtgcgggaa gaacttcagt cagaactcag
     1441 acctggtgcg gcaccgccgg gcccacaccg gggaaaagcc gtaccactgt aacgagtgcg
     1501 gggaaaactt cagccgcatc tcgcacctcg tccagcacca gaggactcac acgggcgaga
     1561 agccgtacga atgcacggcc tgtgggaaga gcttcagccg cagctctcat ctcatcacgc
     1621 accagaagat ccacaccggg gagaagccct acgagtgtac cgagtgttgg cgaagctttg
     1681 gggagaggtc agatctgatt aagcaccaga gaacccacac gggcgaaaag ccctatgagt
     1741 gtgtgcagtg tggaaagggc ttcacacaga gctccaacct catcacgcac cagagagttc
     1801 acaccggaga gaagccttac gaatgtaccg agtgcgataa gagtttcagc cggagctcag
     1861 ctcttattaa acacaagaga gttcacaccg actaggccct gtgtgcgagt ggactcgttt
     1921 ggaggccaag tgatgtttga tatcaacgag ccaacttgag atggctcttt ttaaagttcc
     1981 gacttgcctt gttgtgggct acaggctaaa aggtgaaaga aagcaagact tttgaaaatt
     2041 ctgacccaca gctttgggga tgctgtcccc tcctccaaaa cggtgttatt gttcactgat
     2101 tatcatatga attgatattg tatcatatca tcaaagtcag ccccctcccc agtaacgaga
     2161 gctaaagacc aggggacaag atgttggtgg tcccttgggc ctggaaatgg agtacatctt
     2221 taaagtattt tctctctctc ttatatttgg ctcaaaaaca ctgcagtggg agaaatgtgg
     2281 tgttcacagc tgctttgaca gaaagctggc ggacttgccc tgagctgcga ctgttcagct
     2341 gtagtagctg ggttcacaca catcccttcc aaggggcttt tttattttat tttatttttt
     2401 tagtagctca ccttcatatg taagcatcac ttcgtgcaca ggattctgca tgcggaaagc
     2461 agccgagtgt ctccttgttt ctcacttgtg tatagcttgc atgtttttga aagctgaccg
     2521 aagaaacaat gtaatgggaa aagggaggca caggtttgag gaccaagcgc ccaggggcgg
     2581 tggtgacgtt agccagagat agccatggag actgcccttc atcagggttc tgtattttct
     2641 tcaaaaatca tgtgagggat cagagtaggg aaactgccct tagaaaaaga tagggctgga
     2701 agtcatgacg gagcagaaat aggaagggaa cccaccccct cccccaggga aggggggagc
     2761 ccggccccat tcccagggac aacagtcagt gctgcagaac ctttaagatc acttgtccat
     2821 gttctgctat ctctagggct tgatggagcc gcgtcccagt cttcacctta gcttgcataa
     2881 gggcaaacat atgtatagtg aaatgtgcat tctgatagca gaaactgagt tcgtaagaat
     2941 cagcatgttc ttgcgtgaag tagatcataa gatagaacta tagacataac accgatgtga
     3001 gaggtgtcct ttatctttct tgttacggag ggaaaaacaa atcagcatta gtgcccgagc
     3061 acagtgcgct cctgtgaagt ttggttttgt acagaactaa gcacttgtgt ggatgtgtcc
     3121 atcagttgtg agtggactag acactcaggt cccttgtcct ttctcagcct gaattatctt
     3181 ctatgatgag tggcctcatc tgcagaaacg gataaacctg cggaggaatg tgtttccggt
     3241 gtccagataa aaatagttaa aacgagttga cccaccctag tccagcactg cagttctcct
     3301 tagatagccc ggttggtggc gctcattcag tcccgagggg accgagggga gtcggcaccc
     3361 aggagctggg actttgcctg tgagtgaatg cgttcctgca tacatttaaa gagtcccagt
     3421 gttttctatg gtgcttcatt gcaaaattgc aaacataatt cttattatta ttaatttttt
     3481 tttactaaag aaaacccttt ttgttaaatc ttcgggattt agcacttaaa gcccagtact
     3541 ttctctacag agagtcactg gccacagctg aatgatacca tatcactagt cacagcctcc
     3601 aaaagcaact gaatgagaaa ccactctgag aggctccaag tggtcactcc catttgagta
     3661 caaacttggg gcagggcaca tggtttctat tctgtacaaa atctagcctc ctccgggtat
     3721 tcatacttta actgttatgt aactgacatg ttcttggtaa ctaaactcag ctgtgtcttc
     3781 tgtatcagtg cagctgatga cttgggtgga gttcagcatt ctcccattgc ttctctgagc
     3841 cacataagtg actgcctggg agtggcttgt agaagacaga acctctaacc caacttcatt
     3901 ccacaccatt tccctcctct gttacacaca cacacacaca ccaggcacag acacacacac
     3961 acaccaggca cacacacaga cacacagaca cacacaccag gcacacatac acaccaggca
     4021 cacacacaca cacacacaca cacacacaca ccaggcacac acacccagcc ctagccttcc
     4081 tttaaaggtt atgctgtgtt tcatttgctg cttttgcctt ctaggagatg aaaaggctcc
     4141 tgggaggttt ctgattgcct tcccacctct tcgtatgtgt acactctagc tgggtggcta
     4201 aaaaggcagt ggctgtgcca gctctgtcca ctcagctatg gtcagctgct ccccttcctg
     4261 cgctgagctg cagaagtcac acaactgtca cccttcacta acgctaagtg catgccttct
     4321 gttcacaagt ccctggccgt ttctgcacat accagacagt ctgtgcctgt gttctatggt
     4381 tgtggagagt ggatgaacag gtaaatctgt agaacaggtt cccttggtat tggtcaatta
     4441 tcctagtgtc ttgtttatag ctgtattatc ctaacaatat tctataatta aaggtataat
     4501 ttttaaactc aaaa
//
