LOCUS       NM_001142962            3170 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 458 (Zfp458), transcript
            variant 1, mRNA.
ACCESSION   NM_001142962
VERSION     NM_001142962.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript but encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1582312.1,
                                           SRR26360181.176589.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-38                JAXUCZ010000002.1  86401514-86401551
            39-165              JAXUCZ010000002.1  86405933-86406059
            166-261             JAXUCZ010000002.1  86406511-86406606
            262-3170            JAXUCZ010000002.1  86407996-86410904
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q23"
     gene            1..3170
                     /gene="Zfp458"
                     /note="zinc finger protein 458"
                     /db_xref="GeneID:499563"
                     /db_xref="RGD:1559684"
     exon            1..38
                     /gene="Zfp458"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..2291
                     /gene="Zfp458"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger protein 458 isoform 1"
                     /protein_id="NP_001136434.1"
                     /db_xref="GeneID:499563"
                     /db_xref="RGD:1559684"
                     /translation="MEDILSFRDVAIDFSAEELEYLGPAQWSLYRDVMLENYSNLVFL
                     GLASSKPYLITLLEQIKEPSDMKKREAITLHPGGKCYMCEECGQVFEWKKVLQNHQKI
                     HLRAKPYKCEECGKSFHFPSLLSAHKRNHTGEKLYNCEICCKAFHASSLLSLHKRIHT
                     GQKPHESENYSKDFHYPSLLSQNKVVHTGEKSYQCEDHGKTFHYPSTFSKHKKIHTGE
                     KPHKCEVCGKAFDYPSRLSNHKRIHTGEKPYKCEVCDRAFHDPSKLSQHKIIHTGEKP
                     YKCDVCGKAFHYPSILSKHKIIHTEENLCKCDICGKAFHYPLLLSQHKIVHTGEKPYK
                     CEDCGKAFYYPSRLSRHKKIHTGEKPYKCEVCGKAFHYLSILSKHKIVHTEENPYKCE
                     VCGKAFDYPSRLSNHKKIHTEEKPYKCEVCGNAFCFSSSLRKHKIIHTGEKPYKCEVC
                     GKAFGSPSRLSKHKKIHTEEKPYKCEVCGKAFHFPSLLSVHKRIHTGEKPYKCEICGK
                     AFYCASTLSVHKRIHTGENNYKCEVCGKAFHCPSTLSVHRRIHTQEKPYKCEVCGQAF
                     HVSSKLSYHKRIHTAEKPYKCEICGKAFYYPSRLSKHKIVHMGEKRYHGQACGKALDY
                     PSRHSKHKKLNPGEKPHKCEICGKAFHFPSLLSIHKKIHTGEKTCKCEVCGKDFHYPS
                     RLSNHKKIHTEGKAYKCDICDKTFNYKSLLSKHKIGHTVENTYHSEVCGKAFGYSSRI
                     SKDKKLHSGEKL"
     exon            39..165
                     /gene="Zfp458"
                     /inference="alignment:Splign:2.1.0"
     exon            166..261
                     /gene="Zfp458"
                     /inference="alignment:Splign:2.1.0"
     exon            262..3170
                     /gene="Zfp458"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcctgctca gatctgggct tggatctctg acatggagga tatactgtca ttcagagatg
       61 tggccattga tttctctgca gaggagttgg aataccttgg tcctgctcag tggagtctgt
      121 accgggatgt gatgttggag aattacagca accttgtgtt cctgggtctt gcttcctcta
      181 agccatacct gattacactt ctggaacaaa taaaagagcc ttcagatatg aagaaacgag
      241 aggctatcac tctgcaccca gggggaaaat gctatatgtg cgaagaatgt ggccaagtct
      301 ttgagtggaa aaaagtactt cagaatcacc agaaaattca tttaagagca aagccttaca
      361 agtgtgaaga atgtggcaag tctttccatt ttccatcatt actttctgca cacaaaagaa
      421 atcatacagg agaaaaactc tacaactgtg aaatatgttg taaagccttc catgcttctt
      481 cactgctttc tttacacaag agaattcata caggacagaa accccacgag tctgaaaatt
      541 atagcaagga cttccattat ccatcattac tttctcaaaa caaggtagtt catacaggag
      601 aaaaatccta ccaatgtgaa gaccatggca agaccttcca ttatccatca acattttcca
      661 agcataagaa aattcataca ggagagaaac cacacaagtg tgaagtatgt ggcaaggcct
      721 tcgactatcc atcaagactt tccaaccata agagaattca tacaggagaa aaaccctaca
      781 aatgtgaagt atgtgacaga gccttccatg atccatcaaa actttctcaa cacaaaataa
      841 ttcatacagg agaaaaaccc tacaaatgtg acgtttgtgg caaggccttt cattatccat
      901 ccatactttc taaacataag ataattcata cagaagagaa tctctgcaag tgtgatatat
      961 gtggcaaggc cttccattat ccattattac tttctcaaca caaaatagtt catacaggag
     1021 aaaaacccta caaatgtgaa gactgtggca aagccttcta ttatccatca agactttcca
     1081 gacataagaa aatacataca ggagagaaac catacaagtg tgaagtatgt ggcaaggcct
     1141 tccattatct atccatactt tctaaacaca agatagttca tacagaagag aatccctaca
     1201 agtgtgaagt atgtggcaag gcctttgatt atccatcaag gctttccaac cataaaaaaa
     1261 ttcatacaga agagaaacca tacaagtgtg aagtatgtgg aaatgccttc tgtttttcat
     1321 catcacttcg taaacacaag ataattcaca caggagagaa accctacaag tgtgaagtat
     1381 gtggcaaggc ctttggttct ccatcaagac tttccaaaca taagaaaatt catacagaag
     1441 agaaaccata caagtgtgaa gtatgtggaa aggccttcca ctttccatca ttactctcgg
     1501 tacacaagag aattcatacg ggagaaaaac cctacaagtg tgagatatgt ggcaaagcct
     1561 tctattgtgc atcaacactt tctgtacaca agagaattca tactggagaa aacaactaca
     1621 agtgtgaagt atgtggcaaa gccttccatt gtccatcaac actttcagtg cacaggagaa
     1681 ttcatactca agaaaaacca tacaagtgtg aagtatgtgg ccaggcattc catgtttcat
     1741 ctaaactctc ttatcataag agaattcata cagcagaaaa accctacaaa tgtgaaattt
     1801 gtggcaaggc cttctattat ccatcaagac tttccaagca taagatagtt catatgggag
     1861 agaaacgcta ccatggtcaa gcatgtggca aggcccttga ttatccatca agacattcta
     1921 aacataagaa acttaatcca ggagagaaac cacacaaatg tgaaatatgt ggaaaagcct
     1981 tccactttcc atcattactt tcgatacaca agaaaattca tactggagaa aaaacctgta
     2041 agtgtgaagt atgtggcaag gacttccatt atccatcaag actttcaaac cacaagaaaa
     2101 ttcatacaga agggaaagca tacaagtgtg atatttgtga caagaccttc aattataaat
     2161 cattactttc taaacacaag attggtcata cagtagagaa tacctaccac agtgaagtat
     2221 gtgggaaggc ctttggttat tcctcaagaa tttccaaaga taagaaactt cattcaggag
     2281 agaaactata aatgtgcaaa gtgtttggaa acaccttcca ttttccatca tcactttcaa
     2341 ccacaagaga actcatacag gagaaaagac ctacaaatgc gaagtatgtg acagcacttc
     2401 tatcatcctt caagactttc caaccataag caaattcata taggagagaa atcatataag
     2461 tgtgaagaat gtggaaagga cttctatttt ccattatcac tttctaaaca caagacaatt
     2521 catatagtag agaaactcta caaatatgaa gtatgtgtcc tggcctccta ttgtccataa
     2581 ttactttctc aacacaagga aattcattac agatgtgaaa tcctacaatt gtataagtct
     2641 tgtcctttgg aacttcccag attctttcta ctcatttcat agcctgttct ggagaggaac
     2701 attacaaata tgaggaatgt ggaaaagcgt tctctacaaa gtcatactta agtctacaca
     2761 agttaactca caatgtgaag gacatatata aatgcaaaga atatggcaaa atgctcaaca
     2821 aaaactttag ggatcatcaa agaatttgtt ctggaggaaa aaaccatatg aatgtaaaga
     2881 atgtgtcaaa ttatttagaa gttgcattaa ctgatcaaac acagggtaat tcttactaga
     2941 gacaaactta aaaatatgaa gaacattgca aaaactatta ccagtcttct ggtattaaac
     3001 aacactaaag aattcatttg tcaaagaaac catacaaatg tgaagaatgt gccaaggtct
     3061 tctggacata ctaagaacaa ttgaaccatt tcacaattca tactagactg aaatgccacc
     3121 tgtgaaaaat attgcaaacc ctttaataaa cttacttata tttctcaaca
//
