LOCUS       NM_001169143            1501 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 444 (Zfp444), mRNA.
ACCESSION   NM_001169143 XM_001057809 XM_214805
VERSION     NM_001169143.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1 and FM030255.1.
            
            On or before Dec 18, 2009 this sequence version replaced
            XM_214805.4, XM_001057809.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.1299.1,
                                           SRR26643292.930.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                JAXUCZ010000001.1  76761440-76761450   c
            12-603              FM030255.1         1-592
            604-1501            JAXUCZ010000001.1  76744237-76745134   c
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1501
                     /gene="Zfp444"
                     /gene_synonym="Znf444"
                     /note="zinc finger protein 444"
                     /db_xref="GeneID:292569"
                     /db_xref="RGD:1304847"
     exon            1..29
                     /gene="Zfp444"
                     /gene_synonym="Znf444"
                     /inference="alignment:Splign:2.1.0"
     exon            30..369
                     /gene="Zfp444"
                     /gene_synonym="Znf444"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1059
                     /gene="Zfp444"
                     /gene_synonym="Znf444"
                     /codon_start=1
                     /product="zinc finger protein 444"
                     /protein_id="NP_001162614.1"
                     /db_xref="GeneID:292569"
                     /db_xref="RGD:1304847"
                     /translation="MEAPAPQPVKQENLSVEALTLDSPWHRFRHFHLGDAAGPREALG
                     LLRALCRDWLQPEVHTKEQMLELLVLEQFLSALPADTQAWVCSRRPQSGEEAVALLEE
                     LWGPATSPDRSTAMRPPRDMTEGPGGSVGKEESGVIPLGTGASSETEVPSTGNSAAMR
                     PYKQEPGSPPPAPLAPVLPAFLAAPGTVSCPECGKSPLKPAHLLRHRQSHSGEKPHAC
                     PECGKAFRRKEHLRRHRGTHPGSPGPALRPLPAREKPHACCECGKTFYWREHLVRHRK
                     THSGARPFACWECGKGFGRREHVLRHQRIHGRAAAVAQGTSAPGPEGGGAFPPWALG"
     exon            370..478
                     /gene="Zfp444"
                     /gene_synonym="Znf444"
                     /inference="alignment:Splign:2.1.0"
     exon            479..1501
                     /gene="Zfp444"
                     /gene_synonym="Znf444"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttgggggg cctcgcccag gagagtgagg tgctggtaac tcaacctagg tggccccatg
       61 gaggccccag cgccccagcc agtgaagcag gagaatctgt cggttgaggc cctgacgctc
      121 gactccccgt ggcaccgctt ccgccacttc cacctgggcg atgcagctgg gccacgtgag
      181 gccctggggc tgctccgggc cctgtgtcgg gactggctcc aaccggaagt gcacacgaag
      241 gagcagatgc tggagcttct ggtgctggag cagttcctga gcgccctccc tgcagacacc
      301 caggcgtggg tgtgcagccg ccggccccag agtggagagg aggctgtggc gctgctagag
      361 gagctctggg gcccagcaac ctccccagat cggtcgacag caatgaggcc acctcgggat
      421 atgacagaag gcccgggggg cagtgttgga aaggaagaaa gtggggtaat tcccttagga
      481 accggggcct cctccgagac agaggtgccc tcaacgggga acagcgcggc catgcgtccg
      541 tacaagcagg agccgggcag ccccccacca gccccgttgg cacctgtcct cccagcattc
      601 ctggcggccc caggcactgt gtcgtgcccg gagtgtggca agtctcccct aaagccggcg
      661 catctgctgc gccaccggca aagccactcc ggcgagaagc cgcacgcgtg ccctgagtgc
      721 ggcaaggcat tccggcgcaa ggagcacctg cggcgccacc gcggcacgca ccctggcagc
      781 ccggggcctg cattgcgccc cctgccagcg cgcgagaagc cgcatgcgtg ctgcgagtgt
      841 ggcaagacct tctactggcg tgagcacctg gtgcgccacc gcaaaacaca ctctggcgcg
      901 cggcccttcg cctgctggga gtgtggcaag ggcttcggga gacgtgagca tgtgctccgt
      961 caccagcgca tccatggccg ggcggccgcg gtagcgcaag ggacttcagc accgggtcca
     1021 gagggtggcg gtgcctttcc accttgggct ctggggtagc tgtgattcca aacacctgct
     1081 acagggcctc atccccttag gatcctccca accccattgc ttcttccctt tcaggtctca
     1141 cccatattca ctccttcctc ccttctggaa ttctcagctt tcacccaccc ctgcgaaata
     1201 ccctctgtcc ctccctcatt ccatcccctt ttcatggagg aaagacttgc cccaggacac
     1261 ccttcacgtg gggaaggggg ctcagggaag gagcagagcc cccgctcctc ccacctccca
     1321 aggaaggtga ttttgaaccc taggacagag tcagggccaa tggagagagg agacccagac
     1381 cggatctggt tctttccaca gcccaaagga atgaagtggg gagaggtgcc cgagacagct
     1441 tgtcacagat ggcaggtcac cagcatctga gagagtaata aagggactga ctcagtgtgt
     1501 a
//
