LOCUS       XM_017592245            5312 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 442 (Zfp442),
            transcript variant X1, mRNA.
ACCESSION   XM_017592245
VERSION     XM_017592245.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017592245.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017592245.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5312
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5312
                     /gene="Zfp442"
                     /note="zinc finger protein 442; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 86 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102555033"
                     /db_xref="RGD:7551590"
     CDS             151..1497
                     /gene="Zfp442"
                     /codon_start=1
                     /product="zinc finger protein 431-like isoform X1"
                     /protein_id="XP_017447734.2"
                     /db_xref="GeneID:102555033"
                     /db_xref="RGD:7551590"
                     /translation="MGVVTYDDVHVNFTQEEWALLDPSQKSLYKDVMLETYRNLAAVG
                     NNWEDHNIEEHFQSSRRHGRHEKSPIEEKSSEFTQHGKIFAYHSHSQRHQQIHTGEKS
                     YEGIQYFESFAYHSSIQIHKRTHGGDKPSNCNQCGKAFTAHSSLKMHKRIHTGEKPDE
                     GNQRGKDVPQHSHLQQHAGIHTVKCSQSGKDFACYTDLQIRQRTHTAEKAYECNLCGK
                     AFVQHSHLERHGRSHTGEKPYKCNQCGKAFSQSSNLQVHKRTHTGEKPFECKQCGKAF
                     ASQSGLQQHKRTHTGKRPFECKQCDKAFARHSHLQRHQRIHTVEKLYECNQCGKSFAQ
                     NNHFIQHIRTHTGKKLYECKQCNKAFACQSGLQYHRRTHTGEKPHGCNECGKTFIYHS
                     YLQIHRRTHTGEKPFECDQCGKAFARNNNLQVHKTIHTREKLCECKQCGKAICKSQ"
ORIGIN      
        1 ttccggagca ttccagcgag ttcccgtcgg gagctttctt gctagtttcc ctctgaagcc
       61 gaacagtcag gagtatttcc gtttgacgtg ttctgtctgc tgctgctggg tgctgtgagg
      121 agaggctccg gcaagctcag aagtcccgac atgggtgttg tgacctatga tgatgtgcat
      181 gtgaacttca ctcaggaaga gtgggctttg ctggatcctt cccagaagag tctctacaaa
      241 gatgtgatgc tggagaccta caggaatctt gctgctgtag gcaacaattg ggaagaccat
      301 aatattgaag aacattttca aagttctaga agacatggaa ggcatgaaaa aagtcctatt
      361 gaagagaaat cctcagaatt tactcaacat ggtaaaatct ttgcttatca cagccattct
      421 caaagacatc aacaaattca taccggagag aaatcctatg aaggtattca atattttgag
      481 tcctttgcat atcacagtag tatacaaata cataaaagaa cacacggcgg agacaaaccc
      541 tctaattgta accaatgtgg taaagccttt acagctcaca gttctcttaa aatgcataaa
      601 agaattcata caggtgagaa acctgacgaa ggtaatcaac gtggtaaaga cgttccacaa
      661 cacagtcatc ttcagcaaca tgcaggaatt catactgtga aatgtagcca aagtggtaaa
      721 gactttgcat gttataccga tctacaaata cgtcaaagaa cacatactgc agagaaagct
      781 tatgaatgca atctctgtgg taaggccttt gtacagcaca gtcatcttga aaggcatgga
      841 agaagtcata ctggggagaa accctataaa tgtaatcagt gcggtaaagc cttttcacaa
      901 agcagtaatc tccaagtgca taaaagaaca catactggag aaaaaccctt tgagtgtaag
      961 caatgtggga aagcctttgc aagtcagagt ggtctccaac agcataaaag aacacatacg
     1021 ggaaagagac cctttgaatg taagcagtgt gataaagcct ttgcacgtca cagtcatctt
     1081 caaagacatc aaagaattca tactgtagag aagctctatg aatgtaatca atgtggtaaa
     1141 tcctttgcac aaaacaatca ttttatacaa catatacgaa cacatactgg aaagaaactc
     1201 tatgagtgta agcaatgtaa taaagccttt gcatgtcaaa gtggtctcca gtatcataga
     1261 agaacacata ctggagagaa gccccatgga tgtaatgaat gtgggaaaac attcatatat
     1321 cacagttatc ttcagataca tcgaagaaca catactggag agaaaccctt tgaatgtgac
     1381 caatgtggga aagcctttgc acggaacaat aatctccaag tgcataaaac aatacatact
     1441 agagagaaac tctgtgaatg taagcagtgt ggcaaagcca tttgtaagtc acagtagtct
     1501 ccacgtgcat aaaagaacac atgctgaaga gaaaccctat gaatgtaagc agtgtagcaa
     1561 agactgcaca gcaaagtggt ctccagaaac ataaacaaat gcataatgga gagaaacccg
     1621 atgagggtaa tcaatgtgat caagcctttg catgtcaaaa tggtctcctg tatcataaaa
     1681 caacacatcc tggagagaaa ccctatggat gtaatgaata tggtaaagtc tttcacctgg
     1741 cagttatttt caaatatata aaagaataca catactggag agaaaccctt tgaatgtgac
     1801 caatgtggta aagcctttgc gtgaagcagt catctcctaa catataaaag aagacatact
     1861 ggacagaaac cctatgaatg taagcaatgt ggcaaaacct ttgtgtgtca aagtggtctc
     1921 caatatcata aaagaaccca taacatatac agcaaagaaa ccctatgaag gtcatcaata
     1981 tgatcaagcc tttgcatgtg aaagtggtct cctgtatcat aaaacaacac atgctggaga
     2041 gagaccctat ggatgtaata aatatgctaa agtctttgta cttcacagtt atcttcgtat
     2101 atataaaata atacatactg gagagaaatt ctttgaatat gaccaatgtg gtaaagcctt
     2161 tgtgtgtcaa agtcgtctcc agtatcataa aagaacccat aacacacagg aaagaaaccc
     2221 tgtgactgtc atcaatgtga tatacccttt gcatgtcaga catcttcaaa ggcactaagg
     2281 aaactataat gtagagaaac tctgagtata tttaacatga taaagccttt gtacatttct
     2341 gtagtcttca tcatcatgaa agaaacccat agtggagaga aacaatgagt gtactacatt
     2401 gggtcaagcc ttttcacatt tcacaagtct tcatcgtctt gaaagaatgc atactagggc
     2461 aaggctatat ggatatattt aatatagtga aacatttgaa catttctaca atctttatca
     2521 tcatgaaaga atttctactg gagagaaact atgactataa aggatttggc aatatgtata
     2581 gctgtcacat ttatattcag tcaaacagga ttatttttct ggacaaaaaa atgggacaag
     2641 tgtcaacaat ctattcaaac tttatggttt gatgtccctc tttattttgt ttgtacttgt
     2701 gagcacagaa atccctgttt atttttgttt gtacttataa tcacatttct ctacaattac
     2761 atgaaatagc tcattctgat ataaaacttt catagtttga aatgtttgga gtaggaattg
     2821 aagtttgctg tatgtcttac aaatctattt acaaaagtgc ttttttttgt tgctgtgata
     2881 aaacacaatg tctaaggcag cttataaaag agattaattt ggcttatggt tccagaaagg
     2941 tatgggatca ccatgacagt catgaaatgt cacacatggc agctaaagca gggtgatcag
     3001 agctcacatc ctcatcctaa agcatgaagc agagagtgta cactagaaat ggtgtataga
     3061 tgtaaattct caaacctacc ccaagtgaca tattgcctcc aacaggacag cattttttta
     3121 agtcttccag aaggatacta ccagctgagg attgtacttc aaccgtacac acttgctttc
     3181 tgttacatga accaatttat ggtgaagaaa agctttaggt aagcctttaa atacctcaaa
     3241 acctgagtca caggaatgaa tgcttacaca ctaaatacat ttatgagtaa aacttatttg
     3301 gtcaaccagt tctattcctt ttaattatgt gatgtcagtg tgtccttttg tgtgtatgaa
     3361 cacgagcatt gttggttctc aagaagatta gaactcttgg atcttctcat agcaggaatt
     3421 ataggaagtt atcaaaaacc tgacctttgt cctgggaata aatttgtctt tacacagcca
     3481 tgtctctagc cctgtaaaca ttttcttttc tttttttttt tcggagctgg ggaccgaacc
     3541 cagggccttg tgcttgctag gcaagtgctc taccactaag gtaaatcccc aacccgccct
     3601 gtaaacattt taaagccttt atatatcatc ttgatgccag gaaataggaa agaattcata
     3661 caagagaaac atcttattca tgtaaatgac ttgataaagc ctttactgtg attatatcac
     3721 aggtgtcttc agtttcaggg aaaaatacca ttcatttctt tttcatcata accttgcagc
     3781 aaggaaatca tttaccatgc tcactcaaat gtagttgaag agatcaccga ttgtggttgt
     3841 ggtttctatt tagaaccatt tggagtaggt attgaagttt gctgtatgtg ttacaaatcc
     3901 atttacagaa gtttattgga ctgttcttat agctcttctg tggctcctgt tcatcttctt
     3961 ttgcattgtc acttggtgat agttatcctt ctgccaaaat gtatagaatg acatacccct
     4021 catcttaaat gacccattgc ttatttaaac ttcaggcagt atgtgatcac acttttttag
     4081 tagatgtacc tgtgaaaggg tggtgggtgg tggttccttg ttttgttttg aattttcaca
     4141 tattctcttc acatattgtg ctttgttatc tagcccagct cgaagagaat acgacaagag
     4201 aatgtagcat tagatactca tgtgtattca aaagagcatt ttcatgtatc tgccagagat
     4261 gtaatgaagt aggataatca gcaaccaacc gtctatcagc agcatgactt cattggtatg
     4321 gatgtgtact tactattaca tattccatgc ttctacatgg tcccattact taccatttgg
     4381 tacttcttct tgagttctgc cttctaagaa aatcatctct attatctaga gatgccagaa
     4441 actgtaacag caatatgatt tatttttcat aaagcatttc tgtatatgtg taatgtgatg
     4501 acggtttttt aggtggaaac taggtgacac cgctgtagga tctactttgg acatctttat
     4561 ccaatgatca tgttcaagag gccagcattg catagtgtag acatttccca ccgagcccat
     4621 cccaccgagt aaaattagtt gaaacattac attagtaaaa tattgctttt tcagattgta
     4681 aacagcacgt cttccccccc cccccccact atttttgtga gactaaactt gccttgatgc
     4741 taaactctat tgaaatcatg acctgactac tcgtgcactg atgcatgatg atgcactgtt
     4801 gactatgcta tccagttgat tgtatgacag actgaaacag atgaatgagc tttccttacc
     4861 attcaggagt cgtgcattac tcaatcactg tgcatgtagt aacctcactg gatgtagttt
     4921 acatttaggt gttataaaga acctgcaggt aaagccagtt cccgggtcta tgcccttatg
     4981 actagctgct cagtgaacag tgctgatatg ggcccaggat tatgacttca cagctgttgt
     5041 ctgcctattc tcttcctatt tattcaatat agtactgcac ttgaagtttt agctaaggca
     5101 gtaagacaac aaaaggcaat caaggggata tgaattggaa aggaagaaga tatcactatt
     5161 tgaggatgct gtgataataa atacctaagt gacctcaaaa attctacctg agaactccta
     5221 gagctataaa caacttcagc aaaatggctg gatataagat taactcaaat cagtagcctt
     5281 cctttataca aatgataagc aggctgagaa ag
//
