LOCUS       XM_039093722            3523 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 420 (Zfp420),
            transcript variant X2, mRNA.
ACCESSION   XM_039093722
VERSION     XM_039093722.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3523
                     /gene="Zfp420"
                     /note="zinc finger protein 420; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 4 ESTs, 349 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     22 samples with support for all annotated introns"
                     /db_xref="GeneID:103690163"
                     /db_xref="RGD:2323829"
     CDS             1068..2804
                     /gene="Zfp420"
                     /codon_start=1
                     /product="zinc finger protein 420 isoform X1"
                     /protein_id="XP_038949650.1"
                     /db_xref="GeneID:103690163"
                     /db_xref="RGD:2323829"
                     /translation="MITHDKMSIFSPGTHLPQHPQGYSTEKPYKCEECGKAFRRASHL
                     SQHHSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYTCKECGKAFTQSSQLIL
                     HHRIHTGEKPYKCEACGKAFIRSSQLSRHQKVHTGEKPFECKECGKAFTQNSQLTLHQ
                     RLHTGEKLYDCKECRKVFTQLSQLILHRRIHTGEKPYECKECGKAFICGSQLSQHQKT
                     HNGEKPYECKECGKAFIRGSLLMQHQRIHTGEKPYKCDECGKAFIRGSQLTQHQRIHT
                     NEKPYECKECGKTFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGE
                     KPYKCKECGKDFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKP
                     YECKECRMAFTQSSHLSQHQRLHTGEKPYVCSECGKAFARGLLLIQHQRIHTGEKPYE
                     CRECGKAFIRGSQLTQHQRTHTGEKPYECRECGKAFGHGSQLTLHQRVHTGEKPYECK
                     ECRKAFAQSSHLSRHQRVHTGEKPYQCKECEKAFTRGSQLTQHQRIHISDKSFDCKEC
                     RIDLSHHSQIFI"
ORIGIN      
        1 tgttgggaac gcctggagga cgtgtctgtg gcattaggtg gcggtgtctc ccatgtgtac
       61 gatgcaaacc tgtgtttcgg agcctgtagc gaccctgatt tgtagttggc gtgatgtgtg
      121 tgaatgagtt gtgactccaa gggtgtgtgt gattgttgct tatctcactg gagatgtttc
      181 tgggactgcg atggcgttgt tggcccacgc gtgtggtgga gcaacggtgc tgttatagcg
      241 aggctataac atagaagaga aaaaatggcc gttgtccatt tagaagggaa gtttgaggtg
      301 atcctggtaa gcctcttagg gggagccgcc ctcagcatag cagacttagt gcacacggag
      361 agctgtgcag tcttccaggg gagttgaagc ccgcccacct cagcagtcct gtctcatgca
      421 caccggcatc cccagcccag gcccctctcc caggaggtcc ttcccgagac ctgtccttat
      481 cacagggtga aacctggaag acagttaatc cccactgtaa acagtccttt cccacctagc
      541 ctcacctcca tcttcctctc ctttgtgtca gtctctaaaa cggcgggaac tctggtccag
      601 tgttacagcc ttctgtgagt atttcttatt ggcaagtgaa aactgcaagc agtgctttga
      661 ttcctgctct gaccttttga aatgattttc ctgactcagt gaaatggttt gcatagaatg
      721 aagtacagct gtccctcagg cagcctcatt gcatccctgg aagactcacc tgataataaa
      781 gttgtccagg aataaggaaa cagataaatt catcaggtac agaagaccat gcaaaactac
      841 ttcacctgag agggaccaga cccagatgtt taaaaacatg ttttttccag gcttccttct
      901 gaacaaggac ttagcttcaa aatagcacac caagggatct gcgttgtctc agtgggaaat
      961 gagggagagg ttaaaaaact gggcgcctaa gactaattct agaaaacctt tggaagtcag
     1021 agttagagaa ggaataagac aattagaaag actattacag gcaagagatg ataacacatg
     1081 acaaaatgtc cattttcagc ccagggacgc acctacctca gcatccacag ggttactcta
     1141 cagagaagcc ctataaatgt gaggagtgcg ggaaagcctt caggcgagcc tcacacctgt
     1201 cccagcatca cagtattcac actggtgaga aaccctatga atgcaagcag tgtgggaagg
     1261 cctttagtcg tgattcccag ctaagtcttc atcagagact tcacaccggt gagaaaccct
     1321 acacgtgcaa ggaatgtgga aaggctttca ctcagagctc acaacttatt ttgcaccata
     1381 gaattcatac tggtgagaaa ccatacaagt gcgaagcatg tgggaaagcc tttattcgaa
     1441 gctcacaact cagccggcat caaaaggtcc acactggaga gaagcctttc gaatgtaaag
     1501 aatgtgggaa ggccttcacc cagaactcac agctcactct gcaccagaga ctgcacactg
     1561 gcgagaagct ttacgactgt aaagagtgca ggaaggtctt tacacagctc tcgcagctca
     1621 ttctccacag acgaatccac actggcgaga aaccctatga gtgtaaagag tgtgggaaag
     1681 ctttcatttg tggctcacag ctttcgcagc accagaaaac ccacaatgga gaaaagccgt
     1741 acgagtgtaa ggagtgtggg aaggctttca ttcgaggttc cctgcttatg cagcatcaaa
     1801 gaatccacac tggcgaaaaa ccctataaat gtgatgaatg tggaaaggct tttatccgtg
     1861 gttcccagct cactcagcac cagaggattc atactaacga aaagccttac gaatgtaaag
     1921 aatgtgggaa gaccttcagt catggctccc aactaactca acatcagaga atccacaccg
     1981 gcgagaagcc ctatcagtgt aaggagtgtg ggaaagcctt taatcgcggg tcactcctta
     2041 ctcgacacca gaggattcac accggtgaaa aaccctacaa atgtaaagaa tgtggaaaag
     2101 attttagccg gggctcagag cttactcagc acgagagaat ccacacgggc gagaagccct
     2161 atgagtgtaa ggagtgtggg aagtccttta tccgtggctc gcagctcact cagcatcaga
     2221 gaatccacac gggggaaaaa ccgtacgagt gtaaagaatg ccgaatggcc ttcactcaga
     2281 gctcacatct ttcccagcat cagagacttc acaccggtga gaaaccctac gtgtgcagcg
     2341 aatgtgggaa ggcctttgcg cgtgggttgc tgctcataca gcatcagaga atccacacgg
     2401 gcgagaagcc ctatgagtgc agggagtgtg ggaaggcttt tatccgtggt tcacagctca
     2461 ctcaacatca gcgaactcac actggagaga aaccttacga atgcagggaa tgtgggaagg
     2521 cctttggtca cggctctcag ctcactctgc atcagagggt ccacacaggt gagaagccct
     2581 atgaatgtaa ggagtgcaga aaggccttcg ctcagagctc acatctttct cggcaccaac
     2641 gggttcatac cggcgagaaa ccgtatcagt gtaaagaatg tgaaaaggcc tttacacgtg
     2701 ggtcccaact aacgcaacat cagaggattc atatcagtga caaatctttt gactgtaagg
     2761 aatgccgaat agaccttagt catcattcac aaatttttat atgagttaat ttattctatg
     2821 caagtaacac agctctccct agccattcat tctttatcag tgaagaattc ttacagatgt
     2881 gaatctggga ctcatgaagt tcagcatttg agaatgtatg tgggagagtg gaaatgctga
     2941 catatccaca tagggaaacc gtttgtttac atgttctcat ggtattacat tttagcggtt
     3001 aaaatggaaa gtgattccat gctgttatat agaaggtcct tagcatagaa aacgtcatta
     3061 ttacattatc caggtgctat cagttggtct cctttgtgac atttgttatg agtaacctgg
     3121 ctttcattga agcatttgta aggcagatct aagacccagt gttttcataa gagtcttcta
     3181 aatatcatgt tttaacatgt aaaagcactt ggatcagtgc ctttcacaaa gcgtatcata
     3241 aatattagct gtatttttat tatttgcatc aaaaggaggg aacttgatga atgtagttat
     3301 cattaagaaa tctttgatgg ggctggagag atggctcagt ggttaagagc actgactgct
     3361 atgccagagg tcctgagttc aattcccagc aaccacatgg tggctcacga ccatctgtaa
     3421 tgagatctga ggccctctac tggtgtgtct gaagacagtg acagtgtaca catatataat
     3481 aaataaataa atttttataa aaggagagga tcatttaaaa aaa
//
