LOCUS       XM_039094996            2180 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 42 (Zfp42),
            transcript variant X2, mRNA.
ACCESSION   XM_039094996
VERSION     XM_039094996.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094996.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2180
                     /gene="Zfp42"
                     /gene_synonym="Zfp971"
                     /note="zinc finger protein 42; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100361947"
                     /db_xref="RGD:2319133"
     CDS             721..1638
                     /gene="Zfp42"
                     /gene_synonym="Zfp971"
                     /codon_start=1
                     /product="zinc finger protein 42 homolog isoform X1"
                     /protein_id="XP_038950924.1"
                     /db_xref="GeneID:100361947"
                     /db_xref="RGD:2319133"
                     /translation="MNEQMKKMAKTSGQKGPGRRALDRMTLNHDEARPVQNTRVEPPH
                     VTYTIHEEGEISPENEEDVFPNGYLECIIRGEFSEPILEEDLLFKSFESLEEAEQDLS
                     CQVLEASSLLEYMTKGTKQEKRATQEEPQQTVGANSVPECSEYLTSRKLPVGEPSEVD
                     LSYHEQLSGFTGEKLKGGPYCGNISMLECPQAGCKKKLRDKTALRKHMLVHGPRQHVC
                     AECGKAFTESSKLKRHFLVHTGERPFQCTFEGCGKRFSLDFNLRTHVRIHTGEKRFVC
                     PFDGCEKSFIQSNNLKIHILTHAKAGKKC"
ORIGIN      
        1 ctccagatct cttggttatc aaattgcccg agttctcttt tcacttctgt ttctcaggag
       61 tagatccaga aaagtcgtta actttaacca gcgcctactg ctcctttaca accctctagt
      121 ggttttcctt tggtgttgaa ctacagcgca aatgactgtc cgtagaattc ccagcctcct
      181 ttgcggttgg cctcaggccg aggtactact gaccggcttt tctaagaatt acggcttcaa
      241 gcctgactgt gtcggtgtcc ttttgcctgt aatctcagca ccagggaggc agaggcaggc
      301 aatctgtgtt gagttggagg acagcctagt ccagaaagca aattccagga cagccgggct
      361 gccttgagaa agaagccctg tctcaaaaaa ccagagggga aaaaagaacg aaggcttcta
      421 tgagaaatgg actaagagct gggacacgag gcaaagacag gcttttgctc tcaatagagt
      481 gagtgtacag tgcagccagc agtcctcact ttctgttctc aaacattctt gggtgtagct
      541 gaccttacca cgtgattgct gggttgactt gcgctcctgt gcacagaaga aagcaggacc
      601 ttctcaccgt gctgcctcgt gttttgtcac cagctactgc tgaccaaata gcaggtgttt
      661 gcctgaggtg actgttgttg gaccagtgtc acctggaagt gatttcctag ctaagacaac
      721 atgaatgaac agatgaagaa aatggcaaag acaagtggcc agaaagggcc gggcagaagg
      781 gccctcgaca gaatgactct aaatcatgac gaggcaaggc cagttcagaa taccagagtg
      841 gaacctcccc atgtaacata caccatccac gaagaaggtg agattagccc tgagaatgag
      901 gaagatgtct ttcctaatgg atacctagaa tgcatcataa gaggggagtt ttctgagccc
      961 attttggaag aggatttact ttttaaatcc ttcgaaagcc tagaggaagc ggaacaagac
     1021 ctttcttgcc aggttctgga agctagttct cttctcgagt acatgacaaa ggggacaaaa
     1081 caagagaaaa gggccacaca agaggagcct cagcagactg ttggagcgaa ctcagttcct
     1141 gagtgttctg agtacttgac aagcaggaag ctccctgttg gagaaccctc ggaagttgat
     1201 ttatcctatc atgagcagct gtcaggcttt actggagaga agctaaaggg tggtccatac
     1261 tgtggtaata tctcgatgct ggagtgtcct caagctgggt gcaagaagaa gctgagggat
     1321 aaaactgccc tgaggaaaca catgctggtc cacggtcccc gtcagcacgt gtgtgcagag
     1381 tgtgggaaag cttttacaga gagctcgaaa ctaaagcggc acttcctggt ccatacagga
     1441 gagaggcctt ttcagtgcac cttcgaaggc tgtgggaagc gcttctcact ggatttcaac
     1501 ttgcgcaccc atgtccgcat ccacacgggt gagaagcgct ttgtgtgtcc ttttgatggc
     1561 tgcgagaaga gttttattca gtcaaacaac ctgaagattc acatcctaac tcatgcaaag
     1621 gcagggaaga aatgctgaaa gtcgagacag attgtcccag gctgagtggt cttactggca
     1681 gaggcaccga ggatccatgc attatgtatg agaatattat ttgtggggat ggattctatg
     1741 gctaaaataa ctttgcaaat ctagaaggcc tgcttgtatt ttttatttac ttcattacac
     1801 aattttaaga acattgtttt ttgtattcca tggtgtagtt ccaacagaaa agtcaatggt
     1861 gaaagcataa tgtttaatat atgtgctaca ctgttgaagg tgacagtgtt tttgcatacc
     1921 taataaaaaa tagcttattt ttaattatgc agttcctaat gccctagctt ttacccttta
     1981 aaatgcttca tgggaaatga tcctaaagaa tgggtacctt tggcagtagt caacaaatga
     2041 atacatattt ctacattttt gatttttgtt ttccttattg tatcaaacta ttaatcatag
     2101 ttaaatgtga atagttatat aataaagttg atccatctga agattttagg tgtttcaaaa
     2161 taaaaggaaa taaaacacta
//
