LOCUS       NM_001009664            1205 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 414 (Zfp414), transcript
            variant 2, mRNA.
ACCESSION   NM_001009664 XM_216862
VERSION     NM_001009664.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1205)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1205)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1205)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Mar 18, 2021 this sequence version replaced NM_001009664.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.25953.1,
                                           SRR26643299.29997.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000007.1  15122420-15122544
            126-408             JAXUCZ010000007.1  15123151-15123433
            409-516             JAXUCZ010000007.1  15123691-15123798
            517-622             JAXUCZ010000007.1  15123908-15124013
            623-957             JAXUCZ010000007.1  15124455-15124789
            958-1205            JAXUCZ010000007.1  15124868-15125115
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..1205
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /note="zinc finger protein 414"
                     /db_xref="GeneID:299647"
                     /db_xref="RGD:1308123"
     exon            1..125
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..1022
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="zinc finger protein 414 isoform 2"
                     /protein_id="NP_001009664.1"
                     /db_xref="GeneID:299647"
                     /db_xref="RGD:1308123"
                     /translation="MEELSGPSSDTLATVESSSNEPDKEVASPDVAATATLSSVEEPG
                     PNPTATPPVWDRGGPLQQVACPVPDSCQTSSTTRGVGTNEDLRLPRRRPPPGKQIPCS
                     SPGCSLSFPSVRDLAQHLRTHCPPTQSLEGKLFRCSALSCTESFPSMQELVAHGKLHY
                     KPNRYFKCENCLLRFRTHRSLFKHLHVCIDHGQNPAPPPPPALDKEPPVPERPPESDP
                     SSSLGLPFPLLEPFTSAPTGPFLPYLNPAPFGLSPPRLRPFLAATPGPPTSSTAIWKK
                     SQGATSSPRRPQGGSDAPSGACR"
     exon            126..408
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /inference="alignment:Splign:2.1.0"
     exon            409..516
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /inference="alignment:Splign:2.1.0"
     exon            517..622
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /inference="alignment:Splign:2.1.0"
     exon            623..957
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1205
                     /gene="Zfp414"
                     /gene_synonym="RGD1308123; Znf414"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagatctgag aagcgggaaa atggcgccga cgtgagcgtg agcctgtgcc gccaaggagg
       61 ccgcccctgc tggagccaga gccaccgaag gcacgggaac cagaggtcta actgagtaga
      121 ggatggagga attatccgga cccagctcgg acacgctggc cactgtagaa tccagctcca
      181 atgagcctga caaggaggtg gcatctccgg atgtggcagc tacagccact ctttcctccg
      241 tggaggagcc cggccctaac ccaacagcca cgccaccagt atgggaccgt ggaggacctc
      301 tgcagcaagt tgcctgtcca gtcccagaca gctgccagac tagctcgacc accagaggcg
      361 tggggaccaa tgaggacctt cggttgccta gacgacgtcc accaccaggg aaacaaatac
      421 cctgctctag ccctggctgc tccctcagtt tccccagtgt tcgagatctg gcacagcatc
      481 tccgtaccca ctgtccaccc acacagtcac tggaaggcaa actcttccga tgctcagccc
      541 tgagctgcac tgagagtttc cccagcatgc aggagctggt agcccacggc aagctgcact
      601 acaagcccaa tcgatacttc aagtgtgaga attgcctcct gcgcttccgc actcatcgct
      661 cgctcttcaa gcatctgcat gtttgtatag accatggtca gaacccagcc ccgccaccac
      721 cccctgccct ggacaaagag ccacctgtac ctgagcgtcc cccagagtcc gacccttcgt
      781 cctccctggg cctgccattc ccactacttg agcctttcac ctctgccccc actgggccct
      841 tccttcctta cttgaaccct gcaccctttg gcctgagtcc cccgagactg cgcccattcc
      901 tggctgccac tccagggcca ccgacatcca gcactgccat ctggaagaag agtcaaggtg
      961 ctaccagtag tcctagaaga cctcagggcg gctccgatgc gccctcaggt gcgtgcaggt
     1021 gaccaccagg gacgggtgga ggggcccttc attcctgtgc cctaagtggg ccctgtgaat
     1081 gctggaaagc agcggtgact gtcccttaaa atacatgatt tttgcctttc aaatgactgg
     1141 tatctatgcc ttcatctggt atctgtgcca gtgttcctgt gtaaacattt gtgtcttgtt
     1201 ctgtc
//
