LOCUS       NM_001395138            3428 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 40 (Zfp40), mRNA.
ACCESSION   NM_001395138 XM_006228106
VERSION     NM_001395138.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 4, 2021 this sequence version replaced XM_006228106.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.2732472.1,
                                           SRR26360172.1436144.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-163               JAXUCZ010000001.1  71658604-71658766   c
            164-289             JAXUCZ010000001.1  71657097-71657222   c
            290-380             JAXUCZ010000001.1  71656754-71656844   c
            381-462             JAXUCZ010000001.1  71643079-71643160   c
            463-589             JAXUCZ010000001.1  71640102-71640228   c
            590-3428            JAXUCZ010000001.1  71636251-71639089   c
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..3428
                     /gene="Zfp40"
                     /note="zinc finger protein 40"
                     /db_xref="GeneID:690661"
                     /db_xref="RGD:1593410"
     exon            1..163
                     /gene="Zfp40"
                     /inference="alignment:Splign:2.1.0"
     exon            164..289
                     /gene="Zfp40"
                     /inference="alignment:Splign:2.1.0"
     exon            290..380
                     /gene="Zfp40"
                     /inference="alignment:Splign:2.1.0"
     CDS             346..2739
                     /gene="Zfp40"
                     /codon_start=1
                     /product="zinc finger protein 40"
                     /protein_id="NP_001382067.1"
                     /db_xref="GeneID:690661"
                     /db_xref="RGD:1593410"
                     /translation="MVNRGNCSKGCRTPVFVPETETQRGATGKMAASLIDVPQDILTF
                     RNVAVDFSKEEWEYLDSSQRALYMDVMWENYSNLVFVENHCICGKYEEVVDQSSKHIV
                     YQHANIEEKSYKCHELGKMLYDSSQSLLYNTSDTTENCKIYGSDNQWDHSNESLNLKA
                     HKSRNTEEEQYKDCREHLNLCSIIGPYPQIDTGKKEHKITEYDRFFDSKHKLMIKRMC
                     SGEKPYQCRKCGKCFRAYSSLYRHRRTHPGEKTYKLTECNKSILYFSHQKVHYNIHYG
                     EKPYKCIECGKCNYHSSGFERHYRIHTGEETYKCYDCRKSFICYLGLKNHHKIHGGER
                     PYECKQCSKSFYTLSHLENHYRTHRRQKLHRCNECGKSLSSSSGLQRHQRIHRGEKAY
                     ICAECDKCFIQKSQLKTHQKIHTGEKSYKCSECEKSFTVGSSLRIHQRIHTGEKPYKC
                     SECHKCFIQQAHLRRHQKIHTGEKPYKCSECEKSFTVGSDLRMHQKIHTGEKPYKCSD
                     CDKCFIQKAKLKKHQRIHTGEKPYKCSECEKCFTVVSDLRTHQKIHTGEKPYKCSECD
                     KCFIRKANLRRHHRIHTGEKPYKCSDCGKCFIQKANLRTHERIHTGEKPYKCECGKSF
                     SVGSDLRKHQKCHTGEKPYKCSECHKCFIRKAHLRRHQRIHTGEKPYKCSDCGKCFIQ
                     KANLRTHQKIHTGEKPYKCSDCDKCFIQKDHLRTHQRLHTGEKPYKCSECEKSFTGGS
                     ILRKHQKIHTARSLTNAMNLTNPLSKKPTLELIKEFIQERSLINAMYIAQSLPASHV"
     exon            381..462
                     /gene="Zfp40"
                     /inference="alignment:Splign:2.1.0"
     exon            463..589
                     /gene="Zfp40"
                     /inference="alignment:Splign:2.1.0"
     exon            590..3428
                     /gene="Zfp40"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggaattgc gaggtccgga atccggggtc cgggtaatgg gcttctctag taggacctga
       61 aagtctccct catctacggg tgcggcgtga ggtgtcctga gcaaaatcat caatcaacag
      121 cgccatagcg tgagcagcag cccggcgacc atggaacgcc caggatttgt tgatcttcaa
      181 tgctgtgaag gtgaacttgg ttcaggagga atgtgaatgg ttagaccttg ctcaaagagt
      241 ttttacaaag aactcctgtt ggagaagtgc aacagtctgg tttctctagg tctcatactc
      301 ctcagccagt cctgctcatc tgtgaagcag agcaaagagc cctagatggt gaacagagga
      361 aactgtagca aaggatgcag aactccagtc tttgttcctg agacagaaac tcagagagga
      421 gcaacaggaa aaatggctgc ttctctgata gatgtgcccc aggatatatt aacattcaga
      481 aatgtggctg tggacttctc caaggaggaa tgggaatatc tagactcttc tcaaagagct
      541 ctatacatgg atgtaatgtg ggagaattac agcaatctag tttttgtaga aaaccattgc
      601 atatgtggta aatatgaaga ggtcgtggat caaagctcaa agcatattgt ctatcagcat
      661 gcaaatatcg aagaaaagtc ttacaaatgt catgagcttg gcaaaatgct ttatgattcc
      721 tcccaaagct tactttacaa tacaagtgat actacagaaa actgcaagat atatgggagt
      781 gataaccaat gggatcattc taatgaatca ttaaacctaa aggcacataa aagtaggaac
      841 actgaagaag agcaatacaa agattgtagg gagcatttaa atttgtgttc catcattggc
      901 ccatatccac aaattgacac tggaaagaaa gaacacaaaa ttacagagta tgatagattt
      961 tttgactcta aacataaact catgataaaa cgaatgtgta gtggagagaa accttaccaa
     1021 tgcagaaaat gtggaaaatg cttcagggcc tattcaagtc tctatagaca tcggagaact
     1081 catcctggag agaaaaccta taaacttaca gaatgcaata agtccattct atatttttca
     1141 caccaaaaag tacattataa tatccattat ggagaaaaac catacaaatg tatagaatgt
     1201 ggcaagtgca attatcattc atcaggcttt gaaaggcatt atagaatcca cactggagag
     1261 gagacttaca aatgttatga ttgtagaaaa tcctttatct gctatttagg tcttaaaaat
     1321 caccataaaa ttcatggagg agagaggcct tatgaatgta agcaatgtag taagtccttt
     1381 tatacattgt cacaccttga aaaccattac agaacccacc gtagacaaaa acttcacagg
     1441 tgtaatgaat gtggcaaatc cctttcctcc tcctcaggtc ttcaaagaca tcagagaatt
     1501 catagaggag agaaagcata catatgtgct gaatgtgaca aatgcttcat tcagaaatcc
     1561 caacttaaaa cacatcaaaa aattcataca ggagagaaaa gttacaaatg tagtgaatgt
     1621 gagaaatcct ttactgttgg ctcatctctt agaatacatc aaagaattca tactggagag
     1681 aaaccttaca aatgcagtga atgccacaag tgcttcattc agcaagctca ccttagaaga
     1741 catcagaaaa ttcacacagg agagaaacct tacaaatgta gtgaatgtga gaaatcgttt
     1801 acagtaggct cagatcttag aatgcatcag aaaattcata ctggagagaa accttacaaa
     1861 tgtagtgact gtgataaatg ctttatccag aaagcaaagc ttaaaaaaca tcaaagaatt
     1921 catacaggag agaaacctta caaatgtagt gaatgtgaga aatgctttac tgttgtctca
     1981 gatcttagaa cacatcagaa aattcatacc ggagagaaac cttacaaatg cagtgaatgt
     2041 gacaagtgtt ttatccggaa ggccaacctt agaagacatc acagaattca tacaggagaa
     2101 aaaccttaca aatgtagtga ctgtggcaaa tgctttatcc agaaagccaa tcttagaact
     2161 cacgagagaa tccatactgg agagaaacct tacaaatgtg agtgtgggaa atccttttcg
     2221 gttggctcag atcttaggaa gcatcagaaa tgtcatactg gagaaaaacc ttacaaatgc
     2281 agtgaatgtc acaagtgctt tatcaggaaa gcccacctta gaagacatca aagaattcat
     2341 actggagaga aaccttacaa atgcagtgac tgtggcaaat gctttatcca gaaagctaat
     2401 cttagaacac atcagaaaat ccacacagga gagaaacctt acaaatgtag tgactgtgac
     2461 aaatgcttta ttcagaaaga tcaccttaga acacatcaga gacttcatac aggagagaaa
     2521 ccttacaaat gtagtgaatg tgaaaaatcc tttaccggtg gatccattct tagaaaacat
     2581 cagaaaattc atactgcaag aagccttacc aatgcaatga atttgactaa tcctttatcc
     2641 aagaagccca ccttagaact catcaaagaa tttatacagg agagaagcct tataaatgca
     2701 atgtatatag cacagtcttt acctgcatct cacgtctaag aaaacatcag agaaatcatg
     2761 caggaaacag aagattcaat agtaaataga atgtcatatg ctttatatgt gctatgtact
     2821 aataaaccac tagaggcttc acacaagaga atcatgaaca tgagaaaatt gaaaacacct
     2881 ttgagttatg ttcaaatgtt agaaaaaaat caagatttca tactgaggaa aaatgctaca
     2941 aatgtgacat ttgcaggaaa aaaatgttaa aatgtttctt tttcaaactc aaattcttca
     3001 taatggtaac aaaatggaga agcctgaaga atgttatttg tgtaatctag caggtttttt
     3061 tttttaaact aaaacattcc atgctgtaag gaagctgaaa aagacaggaa ataaaaaact
     3121 cagaacatct tcaggaagta cctgagactg acagaattta ttgaccttaa ttactttgaa
     3181 gaaactcata cctgtcttgc tgcttagaag acatttgatt tatttaggta ttaagatatg
     3241 atgctcttaa acctgtagac aggctacagt gtgtagtgtg ctctgggtgt caggtgtaca
     3301 taagctgtat ctcatgctgg cttggagctt catgatgcaa ctgtctttta gtcctttttg
     3361 ctcctataag cagctccatt cttgtattta tgtaagtaac cccaataaac cccattggtt
     3421 caacaaca
//
