LOCUS       NM_001109230            3456 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus zinc finger protein 398 (Zfp398), mRNA.
ACCESSION   NM_001109230 XM_001053129 XM_575459
VERSION     NM_001109230.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3456)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474011.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001053129.1, XM_575459.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132269 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3456
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..3456
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /note="zinc finger protein 398"
                     /db_xref="GeneID:500108"
                     /db_xref="RGD:1562129"
     exon            1..254
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /inference="alignment:Splign:2.1.0"
     CDS             231..2162
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /codon_start=1
                     /product="zinc finger protein 398"
                     /protein_id="NP_001102700.1"
                     /db_xref="GeneID:500108"
                     /db_xref="RGD:1562129"
                     /translation="MAEATAAPTSEWDSECLTSLQPLPLPPPPAANEAHLQTAAISLW
                     TVVAAVQAIERKVEVHSRRLLHLEGRTGTAEKKLAGCEKTVTELGNQLDGKWAVLGTL
                     LQEYGLLQRRLENLENLLRNRNFWILRLPPGIKGDIPKVPVAFDDVSIYFSTPEWEKL
                     EEWQKELYKNIMKGNYESLISMDYAMNQPDVLSQIQPEGEHSTDDQPRPEASEMPADP
                     SEEPGLSTSDILSWIKQEEEPQVGVPQESKESELYKGTYADEELVIKAEDLARASLCP
                     EVPVAFSAPPPAAAKDTFSDIAFKSQQCTPMAPFGRTATDLPEASEGQVTFTQLGSYP
                     LPPPVGEQVFSCHHCGKNLSQDMLMTHQCSHAAEHPLTCAQCPKHFTPQADLGSTSQD
                     HANETPPTCPHCARTFTHPSRLTYHLRVHNSTERPFLCPDCPKRFADQARLTSHRRAH
                     ATERPFRCPQCGRSFSLKISLLLHQRGHAQERPFSCPQCGIDFNGHSALIRHQMIHTG
                     ERPYPCTDCSKSFMRKEHLLNHRRLHTGERPFQCPHCGKSFIRKHHLMKHQRIHTGER
                     PYPCAVCGRSFRYKQTLKDHLRTGHNGGCAGDRDPSVQPPDPPGPLLTALETSGLGVS
                     TEGLESSQWYGEGSGGVVL"
     exon            255..650
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /inference="alignment:Splign:2.1.0"
     exon            651..777
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /inference="alignment:Splign:2.1.0"
     exon            778..891
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1005
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..3456
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtactcgct gcccacaaag cgccagctga ggggcggctg cagccggtgc ggcgtaggct
       61 gccagctact cagctactca gcgtcccagc gtccccggaa gccggattgc cgcgcgagtc
      121 ctgtcagagc gagcaccgcg agaccgcgtc ttgctgtctg cagagagcac tgagcggccg
      181 ggcctgcgtg tggtggcgac tcccgggaca ggaccgggca gcggagggcc atggctgagg
      241 cgaccgccgc tccgacttct gaatgggact cggaatgcct tacatccctg cagccccttc
      301 ctcttcctcc acctccagca gcaaatgagg cacatctgca gactgcagcc atttccctgt
      361 ggacagtggt ggctgctgtg caggccatag agaggaaggt ggaagtccac agccggcgac
      421 tcctccacct agaaggcagg acagggacag cagagaagaa actagcaggc tgtgaaaaga
      481 cagtgacaga gcttgggaac cagctggatg gcaagtgggc cgtgctgggg accttgctgc
      541 aggagtatgg gctgctgcag cggcggttgg agaacttgga gaacttgttg agaaacagga
      601 acttctggat cctgcggctg cccccaggta ttaaaggaga tatcccaaag gtgcctgtgg
      661 catttgatga tgtctccatc tacttttcca ctccagagtg ggaaaaatta gaagaatggc
      721 aaaaggaact ttacaagaat atcatgaagg gcaactacga gtctctcatc tccatggatt
      781 atgccatgaa tcaacctgat gttttatccc agattcaacc agaaggagaa cacagtacag
      841 atgaccaacc aaggccagaa gcaagtgaga tgcctgcaga ccccagtgaa gagcctggcc
      901 tttcaacctc agacattctg tcttggatta aacaagagga agagcctcag gttggagtcc
      961 cccaggagtc taaagagagt gagctgtaca aaggtaccta tgccgatgaa gaacttgtca
     1021 tcaaagctga agaccttgct agagcttcct tgtgtcctga agttccagta gccttctctg
     1081 ctccaccacc agcagcagcc aaggatacat tttcagatat agctttcaaa agtcagcagt
     1141 gtacacccat ggcacctttt ggacgaacag ccactgacct gcctgaagcc tcagaaggac
     1201 aagtgacttt tactcagtta ggaagctacc cactcccacc tccagttgga gagcaggtgt
     1261 tctcatgcca ccattgtggc aagaatctca gtcaagacat gttaatgaca catcagtgta
     1321 gccatgctgc tgaacacccc ttaacctgtg cccagtgtcc caaacacttc accccacaag
     1381 cagatcttgg tagcacctcc caggatcatg ccaatgaaac accacccacc tgccctcact
     1441 gcgcccggac attcacccac ccctcacgac tcacttacca ccttcgggtc cacaacagta
     1501 ctgagcgccc tttcctctgt cctgattgtc ccaagcgctt tgctgaccag gctcgactca
     1561 ccagccatcg gcgagctcat gctactgaga ggcccttccg ttgcccacaa tgtggtcgta
     1621 gcttcagcct taaaatcagc ctcctgcttc atcaaagggg acatgcacag gagcgcccct
     1681 tctcctgtcc tcaatgtggc attgacttca atggccactc tgcattgatt cgtcaccaga
     1741 tgatccacac aggcgagcgt ccctacccat gcacagattg tagcaagagc ttcatgcgta
     1801 aggaacactt gttaaaccac cggaggctgc acacaggtga gcggcctttc cagtgtccac
     1861 actgtggcaa gagcttcatc cgcaaacacc acctcatgaa gcaccagcgc atccacacag
     1921 gcgagcggcc gtacccctgt gcagtgtgtg gaaggagctt ccgctacaag cagacgctca
     1981 aggatcatct acggaccggt cacaatggag gctgtgcggg tgatagggac ccttccgtac
     2041 agccaccaga cccacctggt ccactcttaa ctgccctgga aacctctggc ctaggtgtta
     2101 gcactgaagg tctagaatct agtcagtggt acggggaagg gagtggaggg gtagttttat
     2161 agatctgagg cctgttggtt atttatgttc acagcagagc agaaagccca ggagaaagcc
     2221 cacaagttcc aaaacctata gtaattatat ctgttacata aacgaatttg agatctacac
     2281 tcaactagag acatgcttgt gctttggaaa tccacagcag tacaagaata ccgtattttg
     2341 aaaactggaa gagaatctag catccctgtc tttgggtgcc acaaagacag agttacaaag
     2401 caagatatgg cttctgatca tcctgtcaga gtagcagagt gagagtagag acaggtgcat
     2461 gggaggaacc tcaaaccttg aagccatcag gaggcatgag aatgctcaga gcctttctct
     2521 aattgctcag tggtaagatg attgttggaa gaaagtgctt tagctgcttg ttatgttgcc
     2581 atgtgtctga aatgagctaa ggtctgttca taccagtgca gtcacctttc cctgaaatgt
     2641 ggtgactgag gctgcattcc taggcctaga ttttgtctgc taatatattt tgtttaatgt
     2701 tggtgaacaa gaactgtgac tttgatagtt tatttaaggg gacagttctt agtttttata
     2761 gcttaatttg aaacattcag attcttgtgg cagctgttaa aagagtagag aactttgcca
     2821 cagttctggt taggaaatta cgaggagagt tttctctcca ggtttaggag ctaaagatcc
     2881 cagagatccc aggcacacag tgcttgcatg gcctaaaaca ttatatcaac ttatccctta
     2941 ttttttccaa gccggtgatc tggtttttcc atttctggtg tttggttttt tttctctctt
     3001 ttaacactgg gtctcgctgt gtatcttggc ctggaacttt gctttgtaga ccaggctggc
     3061 tttgaactta cagagatctg cctgcctctg cctcatgttc tggggtgcac cacaattccc
     3121 aatctgattc tctttacagt cctcagcagc aaagatcaca gtactttgtc aaggcatcaa
     3181 gcacttcaga aagtaccgct gagcttatgg cttttgttcc cttggtagta taatgctctt
     3241 agggaaagga tttctacttt gtctgccttt gcctcactgg cagtgagcag acaagagacc
     3301 tctctcagcc accaagagct aagtatcatc tatcttacct gttgtgctaa ttttttttag
     3361 acagggtttt actgtggagt cctggctggc ctggaactca gagatttgcc tgtctcagtg
     3421 tctagagtgc taggattaaa agcatgctgt catgcc
//
