LOCUS       NM_001393684            2613 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 382 (Zfp382), transcript
            variant 3, mRNA.
ACCESSION   NM_001393684
VERSION     NM_001393684.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Liu,Z., Zhang,J., Gao,Y., Pei,L., Zhou,J., Gu,L., Zhang,L., Zhu,B.,
            Hattori,N., Ji,J., Yuasa,Y., Kim,W., Ushijima,T., Shi,H. and
            Deng,D.
  TITLE     Large-scale characterization of DNA methylation changes in human
            gastric carcinomas with and without metastasis
  JOURNAL   Clin Cancer Res 20 (17), 4598-4612 (2014)
   PUBMED   25009298
REFERENCE   2  (bases 1 to 2613)
  AUTHORS   Gebelein,B. and Urrutia,R.
  TITLE     Sequence-specific transcriptional repression by KS1, a
            multiple-zinc-finger-Kruppel-associated box protein
  JOURNAL   Mol Cell Biol 21 (3), 928-939 (2001)
   PUBMED   11154279
REFERENCE   3  (bases 1 to 2613)
  AUTHORS   Gebelein,B., Fernandez-Zapico,M., Imoto,M. and Urrutia,R.
  TITLE     KRAB-independent suppression of neoplastic cell growth by the novel
            zinc finger transcription factor KS1
  JOURNAL   J Clin Invest 102 (11), 1911-1919 (1998)
   PUBMED   9835615
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC127483.1, SRR26360194.1848917.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-117               JAXUCZ010000001.1  94505094-94505210
            118-194             JAXUCZ010000001.1  94507212-94507288
            195-349             JAXUCZ010000001.1  94510229-94510383
            350-442             JAXUCZ010000001.1  94511029-94511121
            443-2613            JAXUCZ010000001.1  94514559-94516729
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2613
                     /gene="Zfp382"
                     /gene_synonym="Ks1; Znf382"
                     /note="zinc finger protein 382"
                     /db_xref="GeneID:246264"
                     /db_xref="RGD:708385"
     exon            1..117
                     /gene="Zfp382"
                     /gene_synonym="Ks1; Znf382"
                     /inference="alignment:Splign:2.1.0"
     exon            118..194
                     /gene="Zfp382"
                     /gene_synonym="Ks1; Znf382"
                     /inference="alignment:Splign:2.1.0"
     exon            195..349
                     /gene="Zfp382"
                     /gene_synonym="Ks1; Znf382"
                     /inference="alignment:Splign:2.1.0"
     CDS             196..1845
                     /gene="Zfp382"
                     /gene_synonym="Ks1; Znf382"
                     /note="isoform 3 is encoded by transcript variant 3;
                     multiple zinc finger and krueppel-associated box protein
                     KS1; KRAB/zinc finger suppressor protein 1 (KS1)"
                     /codon_start=1
                     /product="zinc finger protein 382 isoform 3"
                     /protein_id="NP_001380613.1"
                     /db_xref="GeneID:246264"
                     /db_xref="RGD:708385"
                     /translation="MNCHSVPLQGPVSFKDVTVDFTQEEWQRLDPAQKALYRDVMLEN
                     YCHFISVGFHITKPDMIRKLEQGEELWTERMFPSQSYLEDEEVLVKFRDYQDKPPTSI
                     VIINHKKLIKERNNVYEKTLGNNHIISKTLFEYKSDGKVLKNISDFISRDINPVMGTL
                     GDSSEWEESVLTSEQEKTHPVPTLYKQIGRNLSSSLELAQHQKTQIPEQRFECDECDS
                     SFLMTEVAFPHDRAHRGVRDFNCSKDEIAFFEKSDLGIHPHNLMEKKCSTYNKYGKLL
                     CRKSVFVMHPRSQVDERPFQCPYCGNSFRRKSYLIEHQRIHTGEKPYICSQCGKAFRQ
                     KTALTLHEKTHTDGKPYLCVDCGKSFRQKATLTRHHKTHTGEKAYECTQCGSAFGKKS
                     YLIDHQRTHTGEKPYQCAECGKAFIQKTTLTVHQRTHTGEKPYMCSECGKSFCQKTTL
                     TLHQRIHTGEKPYVCSDCGKSFRQKAILTVHYRIHTGEKSNGCPQCGKAFSRKSNLIR
                     HQKTHTGEKPYECHECGKFFSCKSNLVAHQKTHKAETVRFQ"
     exon            350..442
                     /gene="Zfp382"
                     /gene_synonym="Ks1; Znf382"
                     /inference="alignment:Splign:2.1.0"
     exon            443..2613
                     /gene="Zfp382"
                     /gene_synonym="Ks1; Znf382"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaggcgtt aggagaagct gaggaccgca gtggatgctc cccatctccg gggcgacgga
       61 gagagcgaat ccagatgggg agacctggaa ggaaaccgaa aggccgattc gggcctggac
      121 tcttcccgtt tccagaagag gagcccagac gacgacgagg ctcgtctctc gcacatgtca
      181 gagccatgtc taaggatgaa ctgccacagt gtgcccttac agggaccagt gtcattcaag
      241 gacgtgactg tggacttcac ccaggaggag tggcagcgat tggaccctgc ccagaaggcc
      301 ctctacaggg acgtgatgct ggaaaactac tgtcatttca tctcggtggg atttcacata
      361 acaaaacctg acatgatccg caagttggag caaggagagg agctgtggac agagcgaatg
      421 ttcccaagtc agagctatct ggaagatgaa gaggttttgg tgaagttcag agactaccaa
      481 gacaagcctc ctacatcaat tgtgatcatc aaccacaaga agctaattaa ggagaggaac
      541 aatgtttatg agaaaacact aggcaataac catattattt ccaaaacact gtttgagtat
      601 aaatctgatg ggaaagtttt gaaaaacatc tcagacttca tcagtagaga tataaaccct
      661 gtaatgggga cgctgggtga cagcagtgag tgggaggaat cagtcctgac ttcagagcag
      721 gagaaaactc atcctgtccc aactctctat aaacaaatcg gaaggaatct gagctccagc
      781 ctggagctcg ctcagcacca gaagacccag attccggagc agaggtttga atgtgatgaa
      841 tgtgacagct ccttcctcat gacagaagtg gcatttccac atgacagagc tcacagaggg
      901 gtcagggact tcaactgcag taaagatgaa attgcttttt ttgagaagtc agaccttggt
      961 attcacccac ataatcttat ggaaaagaaa tgttctacat acaacaaata tgggaaactc
     1021 ctttgcagaa agtcagtttt tgttatgcac cccagatctc aggtggacga gaggcccttc
     1081 cagtgtcctt actgtgggaa cagttttaga aggaagtcct accttatcga gcatcagagg
     1141 atccacacag gtgagaagcc ctatatttgc agtcagtgcg ggaaagcttt ccgtcagaag
     1201 acggctctga cgctccatga aaaaacacac acagacggga agccctacct ctgtgtggac
     1261 tgtgggaagt ccttccgcca gaaggccacc ctcaccaggc accacaaaac gcacacgggg
     1321 gagaaagcct acgaatgcac tcagtgtgga agtgcctttg ggaaaaagtc ctacctcatc
     1381 gaccatcaga ggactcacac aggggagaaa ccctatcagt gcgctgagtg tgggaaggcg
     1441 tttatccaga agacaacgct cacagtgcac cagaggactc acacagggga gaagccctac
     1501 atgtgcagcg agtgtgggaa gtccttctgc cagaagacga ccctgaccct ccatcagcgg
     1561 atccacactg gcgagaagcc ctacgtctgc agtgactgtg ggaagtcctt ccgccagaag
     1621 gctatcctca ctgtgcacta cagaatacac acaggggaaa agtccaacgg ctgtccccag
     1681 tgtggtaaag ccttcagtag gaagtcaaac ctcatccgcc accagaaaac tcacacggga
     1741 gaaaaaccct atgaatgtca tgagtgtgga aaattcttta gttgtaaatc gaacctcgtc
     1801 gcccaccaga aaactcacaa ggcagagacg gtgagatttc agtgagtgga gtgctttcat
     1861 ttatttattt atttatttat ttatttattt atttatttat ttatattttt gaggcagggg
     1921 tctcattatg tagacttggc tggcccagaa cttggtgcat agaccaggct ggtctcaaac
     1981 ttacagagat ccacctgcct ttgcctccca agtgctggga ttaaagatac cggccaccac
     2041 agctggcaga tttggggtgg ttttctggtt tttgggtttt ttgatactga gtgctttcag
     2101 gttccattcc tttccagttc tattccttcc gtttactact tggtaacaca cacacacaca
     2161 cacacacaca cacacacaca cgcgcgcgcg cgcgcacacg ctcacgcgca cacacacact
     2221 actgcataaa ctcaatgaca accaagtatt tgaaaatgaa ggcttcatgt tttaatcact
     2281 agattcagga gactacactg acctctgatt tatgctgtaa atgttcaggt ttgcctttca
     2341 gtctcaggac atagattcct ctggaatcag taatagacca ttgaccgaat gcagcttgtc
     2401 catgtggcat aaaagtcagt tgttgggctg gagagatggc tcagaggtta agagcacccg
     2461 actgctcttc cagaggtcat gagttcaagt cccagcaacc acatggtggc tcacaaccat
     2521 ctgtaaagag attcgatacc ctcttctggt gtatctgaag acagctacag tgtacttata
     2581 tataataaat aaataaatct ttaaaaaaaa aaa
//
