LOCUS       NM_001100486            5514 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 335 (Zfp335), mRNA.
ACCESSION   NM_001100486 XM_008762564
VERSION     NM_001100486.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5514)
  AUTHORS   Zhao,X.S., Fu,W.Y., Hung,K.W., Chien,W.W., Li,Z., Fu,A.K. and
            Ip,N.Y.
  TITLE     NRC-interacting factor directs neurite outgrowth in an
            activity-dependent manner
  JOURNAL   Neuroscience 289, 207-213 (2015)
   PUBMED   25573434
  REMARK    GeneRIF: Results suggest that NIF-1 directs neuronal morphogenesis
            during early developmental stages through modulating
            activity-dependent gene transcription
REFERENCE   2  (bases 1 to 5514)
  AUTHORS   Yang,Y.J., Baltus,A.E., Mathew,R.S., Murphy,E.A., Evrony,G.D.,
            Gonzalez,D.M., Wang,E.P., Marshall-Walker,C.A., Barry,B.J.,
            Murn,J., Tatarakis,A., Mahajan,M.A., Samuels,H.H., Shi,Y.,
            Golden,J.A., Mahajnah,M., Shenhav,R. and Walsh,C.A.
  TITLE     Microcephaly gene links trithorax and REST/NRSF to control neural
            stem cell proliferation and differentiation
  JOURNAL   Cell 151 (5), 1097-1112 (2012)
   PUBMED   23178126
REFERENCE   3  (bases 1 to 5514)
  AUTHORS   Garapaty,S., Mahajan,M.A. and Samuels,H.H.
  TITLE     Components of the CCR4-NOT complex function as nuclear hormone
            receptor coactivators via association with the NRC-interacting
            Factor NIF-1
  JOURNAL   J Biol Chem 283 (11), 6806-6816 (2008)
   PUBMED   18180299
REFERENCE   4  (bases 1 to 5514)
  AUTHORS   Mahajan,M.A., Murray,A. and Samuels,H.H.
  TITLE     NRC-interacting factor 1 is a novel cotransducer that interacts
            with and regulates the activity of the nuclear hormone receptor
            coactivator NRC
  JOURNAL   Mol Cell Biol 22 (19), 6883-6894 (2002)
   PUBMED   12215545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before May 21, 2021 this sequence version replaced
            XM_008762564.3, NM_001100486.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1178              JAXUCZ010000003.1  174066357-174067534 c
            1179-1429           JAXUCZ010000003.1  174065464-174065714 c
            1430-1667           JAXUCZ010000003.1  174064039-174064276 c
            1668-1745           JAXUCZ010000003.1  174062806-174062883 c
            1746-2048           JAXUCZ010000003.1  174062328-174062630 c
            2049-2195           JAXUCZ010000003.1  174062082-174062228 c
            2196-2342           JAXUCZ010000003.1  174059845-174059991 c
            2343-2583           JAXUCZ010000003.1  174057499-174057739 c
            2584-2761           JAXUCZ010000003.1  174057205-174057382 c
            2762-2874           JAXUCZ010000003.1  174056354-174056466 c
            2875-2893           JAXUCZ010000003.1  174055542-174055560 c
            2894-3010           JAXUCZ010000003.1  174055296-174055412 c
            3011-3087           JAXUCZ010000003.1  174055141-174055217 c
            3088-3248           JAXUCZ010000003.1  174054704-174054864 c
            3249-3478           JAXUCZ010000003.1  174054128-174054357 c
            3479-3572           JAXUCZ010000003.1  174052957-174053050 c
            3573-3667           JAXUCZ010000003.1  174052775-174052869 c
            3668-3927           JAXUCZ010000003.1  174050719-174050978 c
            3928-4039           JAXUCZ010000003.1  174049900-174050011 c
            4040-4414           JAXUCZ010000003.1  174049447-174049821 c
            4415-4557           JAXUCZ010000003.1  174048586-174048728 c
            4558-4700           JAXUCZ010000003.1  174048359-174048501 c
            4701-4804           JAXUCZ010000003.1  174048129-174048232 c
            4805-4879           JAXUCZ010000003.1  174047783-174047857 c
            4880-4963           JAXUCZ010000003.1  174047595-174047678 c
            4964-5029           JAXUCZ010000003.1  174047442-174047507 c
            5030-5111           JAXUCZ010000003.1  174047282-174047363 c
            5112-5514           JAXUCZ010000003.1  174046790-174047192 c
FEATURES             Location/Qualifiers
     source          1..5514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..5514
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /note="zinc finger protein 335"
                     /db_xref="GeneID:259270"
                     /db_xref="RGD:628751"
     exon            1..1178
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1429
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     CDS             1229..5239
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /note="zinc-finger/leucine-zipper co-transducer NIF-1;
                     NRC-interacting factor 1"
                     /codon_start=1
                     /product="zinc finger protein 335"
                     /protein_id="NP_001093956.2"
                     /db_xref="GeneID:259270"
                     /db_xref="RGD:628751"
                     /translation="MEENEVESSSDAAPRPGQPEEPSESGLGVGTSEAVSADSTDAAT
                     APGLTEADDSGVGQSSDSGSRSVEEVSESISTEPLPQGYLPDSSSVSRGPVAEVPGGP
                     PALVHSSALPDPSMLVSDCTASSSDLGSAIDKIIESTIGPDLIQSCITVTSGEEGGAE
                     TTQYLILQGPDDGAPMASSMSTSTLANSLAAIEALADGPTSTSTCLEPAEQPPGEPSS
                     LAQPPAPVVEELDLQGLEAMMEVVVVQQFKCKMCQYRSSTKATLLRHMRERHFRPALA
                     VAAAAAGKRGRVRKWGTSTKTTEEEGPEEEEEDDDIVDAGAIDDLEEDSDYNPAEDEP
                     RGRQLRLQRPTPSTLRPRRRPGRPRKLPRLETSDLHDGIGEPLVSSQSTQSPPELQDL
                     EAPSSSDLRALGKVGRGLVETGVSQSDAENAAPSCQDEADVPPRRRGRPSRRFLGKKY
                     RKYYYKSPKPLLRPYLCRICGSRFLSHEDLRFHVNSHEAGDPQLFKCLQCSYRSRRWS
                     SLKEHMFNHVGSKPYKCDECSYTSVYRKDVIRHAAVHSQDRKKRPDPTPKLSSFPCPV
                     CGRVYPMQKRLTQHMKTHSTEKPHMCDKCGKSFKKRYTFKMHLLTHIQAVANRRFKCE
                     FCEFVCEDKKALLNHQLSHVSDKPFKCSFCPYRTFREDFLLSHVAVKHTGAKPFACEY
                     CHFSTRHKKNLRLHVRCRHANSFEEWGRRHPEEPPSRRRPFFSLQQIEELKQQHSAAP
                     GPPLSSAGPEAPQEPAPFQPPETPPLLCPDALGGATIIYQQGAEESTAMATQTALDLL
                     LNMSAQRELGATALQVAVVKSEDVEAELTSTARQPSSEDTTPRVVTLHVAESGSSVAA
                     ESQLGPSDLQQIALPPGPFSGASYSVITAPPVEGRASASGPPYREEPPGEAAQAVVVN
                     DTLKEAGTHYIMAADGTQLHHIELTADGSISFPSPDTLAPGTKWPLLQCGGPPRDGPE
                     VLSPTKTHHTGGSQGSSTPPPATSHALGLLVPHSPPSAAASSTKKFSCKVCSEAFPSR
                     AEMESHKRAHAGPAAFKCPDCPFSARQWPEVRAHMAQHSSLRPHQCNQCSFASKNKKD
                     LRRHMLTHTNEKPFSCHVCGQRFNRNGHLKFHIQRLHSIDGRKTGTSTARAPAQTIIL
                     NSEEETLATLHTAFQSNHGTLGTERLQQALSQEHIIVAQEQTVANQEEATYIQEITAD
                     GQTVQHLVTSDNQVQYIISQDGVQHLLPQEYVVVPDGHHIQVQEGQITHIQYEQGTPF
                     LQESQIQYVPVSPSQQLVTQAQLEAAAHSAVTAVADAAMAQAQGLFGTEEAVPEHIQQ
                     LQHQGIEYDVITLSDD"
     exon            1430..1667
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..1745
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            1746..2048
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            2049..2195
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            2196..2342
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            2343..2583
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            2584..2761
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            2762..2874
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            2875..2893
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            2894..3010
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            3011..3087
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            3088..3248
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            3249..3478
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            3479..3572
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            3573..3667
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            3668..3927
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            3928..4039
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            4040..4414
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            4415..4557
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            4558..4700
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            4701..4804
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            4805..4879
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            4880..4963
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            4964..5029
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            5030..5111
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
     exon            5112..5514
                     /gene="Zfp335"
                     /gene_synonym="Nif; Nif1; Znf335"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagcatttat ttattgttat gtctgtgagg gcacacatgc gacaaaaagc atgtggaggt
       61 gggaggacag cctggaagag actgttctct ccttttacca tgcggattct gggaaaaact
      121 cactacgtag ccccagctgg tctatgtgaa ctcaaatgag gttagcctgc ctctcccgag
      181 tgctggatta aaagtctaag ccaccacagt gggcccaaga actgcaggct tctaaaaata
      241 cctaatactg cgcacgtgtg tatgctaaga atcgaaccca gggcctcatg tttgccactg
      301 agctaattcc ccaacttcta aacacaccta cactatctac aatgaccaga ggacagctgg
      361 gtgtctgaac ctacagtcct aataatgtta aaaaatacat gggttgggga tttagctcag
      421 tggtaaagcg cttgcctagg aagcgcaagg ccctgggttc ggtccccagc tccgaaaaaa
      481 agaaaaaaaa aaaatacagc tcgaagtgca ccatggtcca agcattaaat ctccaaaact
      541 ccctgacctc cctatctgcc aagtcgcctt agctgtgact ccggatcagc ctttcctgtc
      601 ctcaaatctg ttttcccatc tgtatacgct ccctccccac ggtacagcaa acctaacccc
      661 ggaggacccg atccggatcg agaggacctt taagctatag gtgaaaagcc aagaaaaaca
      721 ctgacgtctc ctcccctctg aacgcctcta agccatccta ggtcgctgcg gttccctaag
      781 cgacccctgg aggtgtggct agacgctgga ggccacgccc acgagagctc ggagcctccg
      841 ccgcgcctcg tcctgggagc ctaggatggg acctgcgtga cgtcactcca cttcccgtgt
      901 agccatccgc cacgagagaa agtagtcccc gggcccagct gaccgcagcc ccaatactag
      961 gcaacgtaca aacttctaga gtccttttgg gcccgacgac ggttctgagt cctctgagag
     1021 accttctgaa actccgcaaa tctgcctttc cccggggggc ggcggcggaa gtagttccgg
     1081 ttcgagggag gctgatgggt tcctccgcga cgggggtgag aggatggcga cctcgtcgat
     1141 gccggagtcg gagagcgaca cagcagccag aggctcagag tgaaagcctc ataccctgcg
     1201 cttcgctgtc aatcggtccc cagaaccaat ggaggagaac gaggtggaga gcagtagcga
     1261 cgcggcccct cggcctggcc agccggagga gccttctgag agcggcctgg gtgtgggcac
     1321 ctcggaagct gtgtccgcgg acagtacgga cgctgcgacc gccccaggat taacggaggc
     1381 cgatgactct ggagtggggc agagctcaga cagtggcagc cgctctgtgg aggaggtatc
     1441 cgagagcatt tcaacagagc ccttgcctca gggctacctc cctgattcat cttctgtgtc
     1501 ccggggacca gtggcagaag tgccaggtgg ccccccagcc ctggtgcatt ccagtgctct
     1561 cccagacccc agcatgctgg tgtctgactg cacagcttcc tcttcagacc taggctccgc
     1621 cattgacaag atcattgaat ctaccattgg cccggacctc atccagagct gcatcactgt
     1681 gaccagtggt gaagagggag gagctgagac cacacagtac ctgatcctgc agggcccaga
     1741 tgatggtgct cccatggcgt catcaatgtc tacttccacc ttggccaaca gtctggcagc
     1801 cattgaagcc ctggctgatg gtcccacatc cacatctact tgcctggagc ctgctgagca
     1861 gccaccggga gagcctagtt ctctagcaca gcccccagca cctgttgtcg aggagctgga
     1921 cctgcagggc ctggaggcca tgatggaggt ggtggttgtg cagcagttca agtgcaagat
     1981 gtgccagtac cggagcagca ccaaggccac cctgctccgc cacatgcggg agcggcactt
     2041 ccgcccagca ctagcagtag cagcagcagc agctggtaaa aggggacgtg tacggaagtg
     2101 gggcacttcc accaagacta cagaggagga ggggccggag gaagaggagg aggacgacga
     2161 cattgtggat gctggggcaa ttgatgatct ggaggaggac agtgactaca acccagctga
     2221 ggatgagccc cggggccggc agctacggct tcagcgtccc acaccgagta ccctgagacc
     2281 tcgacggagg cctggccggc cccgaaagtt gcctcgccta gagacctcag acctccatga
     2341 tggcatagga gagccgctag tgagttcgca gagcacacag agccctccag agcttcagga
     2401 tctcgaggct cccagctcct ccgacctaag ggccctgggc aaagtgggga gaggcctggt
     2461 ggaaactggt gtgagtcagt cagatgctga gaatgcagcc ccgtcttgcc aggatgaagc
     2521 tgatgtccca ccccgccgcc gtggaagacc ttccaggcgg ttcctaggga agaaataccg
     2581 aaagtactac tacaagtcgc ccaagccact gctcaggcct tacctgtgcc gcatatgtgg
     2641 ctcacgattc ctgtcccatg aagaccttcg cttccatgtc aactcccatg aggctggtga
     2701 cccacagctc tttaagtgcc tacaatgtag ctaccgctcc cgccgctggt cctcactgaa
     2761 ggagcacatg ttcaaccacg tgggcagcaa accctacaag tgtgacgaat gcagctacac
     2821 cagtgtctac cgcaaggatg ttattcggca tgcggccgtg cacagccagg accgaaagaa
     2881 gaggccggat ccgaccccaa agctgagctc tttcccttgc ccagtgtgtg gccgtgtata
     2941 ccccatgcag aagagactaa cacagcacat gaagactcac agtacggaga agccacacat
     3001 gtgcgataag tgtggaaagt cctttaagaa gcggtacacc ttcaaaatgc acttgctcac
     3061 acacatccag gctgttgcca accgcagatt caagtgtgag ttctgcgagt ttgtttgtga
     3121 ggacaagaaa gcactgttga accaccagct gtcccatgtt agcgacaagc ccttcaaatg
     3181 cagcttttgt ccctatcgca ccttccgtga ggacttcctg ctgtctcatg tggctgtgaa
     3241 gcacacagga gccaagccct tcgcctgtga gtactgccac ttcagcactc gccacaagaa
     3301 gaacctgcgc ctgcatgtac ggtgccgaca tgcgaacagc tttgaggagt ggggacggcg
     3361 ccaccctgag gagcctccat cccgtcgccg ccccttcttc tctctgcaac agatagaaga
     3421 gctgaagcag cagcacagtg cggcccctgg ccctcccctc agctcagcag gccccgaggc
     3481 cccccaagaa ccagcacctt tccagccacc tgagactccc ccactactct gtcctgatgc
     3541 cctaggtggt gccacaatca tctaccagca aggcgctgag gagtccactg caatggccac
     3601 tcagacagcc ttggatctac tgttgaacat gagcgcccaa cgagagctgg gggccacagc
     3661 cttgcaggtg gctgtggtga agtcagagga cgtggaggca gagttgacat ctactgctag
     3721 gcagccttcc tctgaagaca ccactccacg ggtggtgaca cttcatgtgg cagagtcagg
     3781 gagcagtgtg gcagctgaga gccagctagg cccgtctgac ctacagcaga ttgccttgcc
     3841 acctgggcca ttcagtgggg ccagctacag tgtcatcaca gcaccccccg tggaggggag
     3901 ggcatcagct tccggcccac cttacaggga agaacctcca ggagaggcag cccaggctgt
     3961 ggttgtgaac gacactctca aggaagctgg cacccactat atcatggcag ctgatgggac
     4021 ccagttgcac cacattgagc tgactgcaga tggctccatc tccttcccaa gcccagatac
     4081 tctggcccct ggaaccaagt ggcccctgct gcagtgtgga gggccaccta gagatggtcc
     4141 tgaggttctg tctccaacga agacccacca tacgggaggc tcccagggct cttccacccc
     4201 accccctgca accagccatg ccctaggcct gctagtaccc cactccccac cgtctgcagc
     4261 agcttcatca acaaagaagt tctcctgcaa ggtgtgctca gaggccttcc ctagccgtgc
     4321 agagatggag agtcacaagc gggcccatgc tgggcctgct gccttcaagt gccctgactg
     4381 ccccttcagt gctcgccaat ggcccgaggt ccgggctcac atggcacagc actccagtct
     4441 gaggccccac cagtgcaatc agtgtagctt cgcctccaag aacaagaagg acctcaggcg
     4501 gcacatgctg acacacacca atgagaagcc tttctcatgc cacgtctgtg ggcagcgttt
     4561 caacaggaac gggcacctca aattccacat ccagcggcta catagcatcg atggtagaaa
     4621 gactgggact tctacagccc gagccccagc ccagaccatc atcctcaata gtgaagagga
     4681 gacactggcc acactgcaca ctgccttcca gtcgaatcac gggactctgg ggacagagag
     4741 gctacagcag gcactgagcc aggagcatat cattgtggcc caggaacaga cagtggccaa
     4801 tcaggaggaa gctacctaca tccaggaaat cacggcagat ggccagacgg tacagcatct
     4861 ggtgacctca gacaaccagg ttcagtatat catctctcag gatggtgtcc agcacttgct
     4921 gcctcaggag tacgttgtgg tccctgatgg ccatcacatc caggtccagg agggccagat
     4981 cacacacatc cagtatgagc agggcacccc attcctacag gagtcccaga tccagtatgt
     5041 acctgtatcc cccagccagc agcttgtcac ccaggctcag cttgaagctg cagcacattc
     5101 tgctgttaca gcagtggctg atgctgccat ggcccaagcc cagggcctgt ttggcactga
     5161 ggaggcagtg ccggaacaca ttcaacagct gcagcatcag ggcatcgagt acgacgtcat
     5221 caccctctcg gatgactgag cctcaaaggc ccaacgctga tcgtggatat cggggccagc
     5281 tctcctggag actagggact ttcctgtcct acttagggcc tccagatact ggacagttag
     5341 tgtcccttga ctccaaagga gccagacctg tgctcttggg gggcagccaa gggctccagc
     5401 caggacatgc tgggtgtgtc agcctgctgg caggctttgg gagagaaatt tatttttgtt
     5461 ttgatggacc cactggctcc tgtctcaata aagggaccag agtccagctc ttgc
//
