LOCUS       NM_001108165            4256 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 280D (Zfp280d), mRNA.
ACCESSION   NM_001108165 XM_001053952 XM_236387
VERSION     NM_001108165.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4256)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 4, 2010 this sequence version replaced NM_001108165.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.46219.1,
                                           SRR26643284.11483.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                JAXUCZ010000008.1  81886915-81886958
            45-106              JAXUCZ010000008.1  81887386-81887447
            107-253             JAXUCZ010000008.1  81891171-81891317
            254-319             JAXUCZ010000008.1  81893767-81893832
            320-459             JAXUCZ010000008.1  81893928-81894067
            460-577             JAXUCZ010000008.1  81900744-81900861
            578-748             JAXUCZ010000008.1  81904687-81904857
            749-858             JAXUCZ010000008.1  81905255-81905364
            859-1082            JAXUCZ010000008.1  81909766-81909989
            1083-1240           JAXUCZ010000008.1  81912123-81912280
            1241-1341           JAXUCZ010000008.1  81912766-81912866
            1342-1488           JAXUCZ010000008.1  81913837-81913983
            1489-1623           JAXUCZ010000008.1  81920484-81920618
            1624-1931           JAXUCZ010000008.1  81922319-81922626
            1932-2072           JAXUCZ010000008.1  81922745-81922885
            2073-2135           JAXUCZ010000008.1  81933023-81933085
            2136-2254           JAXUCZ010000008.1  81936809-81936927
            2255-2291           JAXUCZ010000008.1  81937075-81937111
            2292-2337           JAXUCZ010000008.1  81950123-81950168
            2338-2393           JAXUCZ010000008.1  81957686-81957741
            2394-4256           JAXUCZ010000008.1  81959332-81961194
FEATURES             Location/Qualifiers
     source          1..4256
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..4256
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /note="zinc finger protein 280D"
                     /db_xref="GeneID:315798"
                     /db_xref="RGD:1560796"
     exon            1..44
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            45..106
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..2988
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /note="suppressor of hairy wing homolog 4"
                     /codon_start=1
                     /product="zinc finger protein 280D"
                     /protein_id="NP_001101635.2"
                     /db_xref="GeneID:315798"
                     /db_xref="RGD:1560796"
                     /translation="MGDSSFQPKDNLKMAELFMECEEEELEPWQKKVKEVEEDDDDEP
                     IFVAEIASSKPAISNILNRVNPSSHSRGIKNGILNRGFTASFKPTSQRCPNSASNPVA
                     ALPVNFHPESRSSDSSVIVQPFSKPGYVTNSPRVLSSNPSELLFDLTQDTGLSHYQGG
                     PTLSIAGLNETSFLSKRPSGSDISSVNPKKPKPNENISGTDASSVVSSEKSPSVMSLQ
                     VVPSQGTNCSSNQSKNGTTFPRACPKCNIHFNLLDPLKNHMTYCCPDMINNFLGLTKT
                     DNLNSANEAKTLDSEKGKLIMLVNDFYYGKYEGDVQEEQKTHTTFKCFSCLKVLKNNI
                     RFMNHMKHHLELEKQSSESWEKHTTCQHCYRQFPTPFQLQCHIESTHTPHEFSTICKI
                     CELSFETEQILLQHMKDNHKPGEMPYICQVCNYRSSLFSEVESHFRTSHENTKNLLCP
                     FCLKVIKIATPYMHHYMKHQKKGIHRCTKCRLQFLTCKEKMDHKTQHHRTFVKPKQLE
                     GLPPGTKVTIRASVAPLQSGSSVTPSISASTSTLQLSPPRTENVTAKNHVKLNTSTPN
                     TTISDPSKTNEIKSNGSKSKNRSKVSNMQKKQSTLSNSNKKSKVNTALRNLRLRRGVH
                     ECIECSSEVKDFANHFPTYVHCSFCRYNTSCSKAYVNHMMSFHSNRPSKRYCIFKKHS
                     ENLRGISLVCLNCDFLTDVSGLDNMATHLSQHETHTCQVLVEKVSVCIPTSERLSELK
                     TEAPTKGQESVSKETARHSTAEREPGASHSESKQDKAPPSEDDTGRDASVCEAAAAAN
                     RERNVTASDTEDVRTSNDVLSRGPEVGTDNMEKEEQAHHTCQEMELKRDQSSESTDDQ
                     SKEHSPTEAELSSEISQDLQLTPEGVGLGQCLRQGEEPESVNSDASEQDSVRLEPLTP
                     SEVLEFEATEVCHSGEDPSASTSDAVSGGTGGSPGGSSPRRAESAADLAGGQEGS"
     exon            107..253
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            254..319
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            320..459
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            460..577
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            578..748
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            749..858
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            859..1082
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1240
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            1241..1341
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1488
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1623
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            1624..1931
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            1932..2072
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            2073..2135
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            2136..2254
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            2255..2291
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            2292..2337
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            2338..2393
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
     exon            2394..4256
                     /gene="Zfp280d"
                     /gene_synonym="RGD1560796; Suhw4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaggcaaac tgagatacaa cttgctgatt tttgtggtca catggtgaca acgtatagaa
       61 agtcagatct acaacttgat gggtgacagt tcctttcaac caaaagataa tttaaaaatg
      121 gcagaactct ttatggaatg tgaagaggag gagctagaac catggcagaa gaaagtgaaa
      181 gaagttgaag aggatgatga tgatgagccc atcttcgtag cagagatagc aagttcaaaa
      241 ccagctattt caaatatttt gaacagagtt aacccgagct ctcattcaag aggaataaag
      301 aatggtatac ttaatcgagg ttttactgct tcattcaagc ctacaagtca acgctgcccg
      361 aattcagcat caaatcctgt ggctgccttg ccagtaaatt ttcatcctga atctagatct
      421 tctgatagct ctgttattgt tcagccattt tctaaacctg gttatgtaac aaattcacca
      481 cgagttctat ctagtaaccc ttcagagtta ctgtttgact tgacccagga tacaggattg
      541 tcacattacc aagggggacc aacactttct attgcaggtt tgaatgaaac ttctttttta
      601 tcaaaacgtc cttctggttc tgacataagc agtgttaacc caaaaaagcc taaacccaat
      661 gaaaatattt ctggaacaga tgcctcttct gtagtctctt cagaaaagtc tccatcagtg
      721 atgtctctcc aagtggtgcc atcacaaggt acaaattgct catcaaatca atctaaaaat
      781 ggaacaactt ttccaagagc atgtcccaag tgtaatattc acttcaatct tttggatcct
      841 ctgaaaaatc acatgacgta ttgctgtcca gacatgataa ataacttttt gggattgact
      901 aaaactgaca atttaaattc agcaaatgaa gctaagactc ttgattcaga aaaaggaaaa
      961 ttgataatgt tagttaatga cttttactat ggaaaatatg aaggagatgt ccaggaagaa
     1021 cagaagactc atacaacctt taagtgcttc agttgcttga aagtcctcaa aaataatatt
     1081 aggtttatga accacatgaa acaccattta gagcttgaga aacagagcag tgagagctgg
     1141 gaaaagcaca ccacctgcca gcactgctac aggcagttcc ccacaccctt tcagctgcag
     1201 tgccacatcg agagcaccca cacgcctcac gagttctcca ccatttgtaa aatctgtgag
     1261 ctgtcatttg aaactgaaca gattctttta caacatatga aggataatca taaacctggt
     1321 gaaatgccat acatctgtca ggtttgcaat tacagatcat cattattttc tgaggtagag
     1381 tctcatttta gaacatcgca tgaaaacact aagaatttgc tatgtccatt ctgcctcaaa
     1441 gttattaaaa ttgccacacc ctatatgcat cattacatga agcatcagaa aaagggaata
     1501 catcgttgca ccaaatgcag actgcaattt ttgacatgca aagagaaaat ggatcacaag
     1561 actcaacatc accgaacatt tgtaaaaccc aagcaactag aaggactgcc ccctggaaca
     1621 aaagttacta ttcgagcttc cgttgcacct cttcaatcgg gatcttcagt tacaccttct
     1681 atcagtgcaa gcacttctac cctccagctc tcacctccaa ggactgaaaa tgtaactgct
     1741 aaaaatcacg tgaaactgaa tacaagtaca ccaaatacaa ccatatctga tcccagtaaa
     1801 actaatgaga tcaagtctaa tggaagtaaa tctaaaaaca ggtcaaaagt ctccaatatg
     1861 cagaagaaac aaagcacatt gtctaatagt aataaaaaaa gtaaagtgaa cacagcacta
     1921 agaaacttaa ggttacgtcg gggtgttcac gagtgtattg agtgttcttc tgaagtaaaa
     1981 gattttgcaa accattttcc tacatatgtc cactgtagtt tttgcagata taacactagc
     2041 tgtagcaaag cctatgtaaa tcatatgatg agctttcaca gtaaccgtcc aagtaaaaga
     2101 tattgtatat ttaagaagca ttcagaaaat ctcaggggca tttctctagt gtgccttaat
     2161 tgtgatttcc taactgacgt ttctggctta gataatatgg ccacacactt aagtcaacat
     2221 gaaactcata cttgccaagt tctagtagag aaagtttctg tttgtatccc aacttctgaa
     2281 cgtctttctg aattaaaaac tgaagctccc actaagggac aagaatctgt gtctaaggaa
     2341 acagcaagac atagtacagc tgaaagagaa ccaggagcat cacattctga aagtaagcag
     2401 gataaagctc ctccatcaga agacgacact gggcgtgatg caagtgtatg tgaagctgca
     2461 gcagcagcaa accgtgaaag aaatgtgacc gcttcagaca cagaagacgt acgcacctct
     2521 aatgacgtct tgagtcgtgg tccagaggtt ggaacagata atatggaaaa ggaagagcaa
     2581 gcacatcaca cctgtcagga aatggagctg aagagggacc aaagttcaga aagcacagat
     2641 gatcagagta aagagcacag tcccactgaa gctgagttgt cttcagagat tagtcaggat
     2701 ttacagctaa caccggaagg tgttggcctt ggtcagtgtc tgaggcaggg ggaggaacct
     2761 gaatctgtga attctgatgc tagtgagcaa gacagcgttc gtttggaacc tttgacgcca
     2821 tcagaagtcc tggagtttga agccacagag gtctgccata gtggtgaaga cccttcagcc
     2881 agcaccagtg acgcagtatc tggtgggaca ggtggcagtc ctggaggaag tagccctcgt
     2941 agagcagagt cagcagcaga cctggcaggc ggacaggaag gaagctgaac gacaaggcat
     3001 tccatgtttc attcccaaca gaaagcactt agaactgtcc ggtgagctca ggagtgctgt
     3061 gctagaggtc agcagtggga ggtcgagaga ggtccgtcat acacttcatc tgtacgttca
     3121 atcttattaa atcagtttac cagtaacagc atggttagta tggatttcca cgtttttaaa
     3181 aacctgaaca gaactttagt gaaaactaag tttgtcatcc aagggtctct tagcactttt
     3241 tgataaaatc ttgtttacca atatgaaatt attataagat agctatgctc atcagacttt
     3301 tcaaactttc attagtacta aacttaaagt cctcatcatc tgaatattcc ttttagtaaa
     3361 cttaaaggaa gagatttaaa accatgtatt tttttgaaaa tacctttgaa ctgccaatca
     3421 attgttactg ttaataaagg ctttgttttt actatgatcc tggtaataaa gcatgcttag
     3481 agtgctaaat tggcctgtta agaacttgga tgaatatgaa aattaagttt ggacttaata
     3541 taacattcca atctgtcaga agcatgcaaa cagaatttta gaatctgtgc gcctccatgc
     3601 aagtgttagc ctgccaggct gtcagcttac ctttattaaa ctttcagtga aagtgaaatt
     3661 atgaaaatat aagtttatat ttgtgctttt agtcagtgta taagctgtgc agaaccccac
     3721 cccagtcccc atggactagt tgtataaagt agaaatctgt tattgaaact cttaaatagc
     3781 tactatgctt ttaatattgt ttcaatgatt tttagcagta gacccataaa aatggtctgg
     3841 aaaccaaacc aaagtatggt agaatgtagg caaaaggaat tgaactaaaa acatgccttc
     3901 gcatgtactc aactatgtta agggacgtcc tcaattgtaa aagtagagac ttctaatggg
     3961 accctaaagc atatgttcaa aaacaagagg gggggtggga attagcctaa tttatccgta
     4021 agtcagctac taagttgatt tttttagata tagaagtgaa tataacaata atttgctttt
     4081 aagtactaat aaagttttat tttaaatgct gcatttttaa ttcttaaaat gtactttgaa
     4141 ttctttgaaa ctgtttaatt gaatgttaaa tgttttcaag gcctgttaaa attctgttgt
     4201 atatagtagt ttttgagcaa atatttgcaa taaaaacctg tctttgaata atttta
//
