LOCUS       XM_008773539            4231 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 280C (Zfp280c),
            transcript variant X1, mRNA.
ACCESSION   XM_008773539
VERSION     XM_008773539.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427656.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008773539.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4231
                     /gene="Zfp280c"
                     /note="zinc finger protein 280C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 2 long SRA reads, 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 109 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:302812"
                     /db_xref="RGD:1564669"
     CDS             282..2543
                     /gene="Zfp280c"
                     /codon_start=1
                     /product="zinc finger protein 280C isoform X1"
                     /protein_id="XP_008771761.1"
                     /db_xref="GeneID:302812"
                     /db_xref="RGD:1564669"
                     /translation="MDKDNSVQEKSPGTEIQVDRLGDNSKMAELIMECEEEELEPWQQ
                     KVEESQNKDDDDDDDELIFVGEISSSKPAISNILNRCSPGSSSKGLKNGSFSPALSNI
                     FKPTNQHYRNPPSHPLIALPSFYPAPKSSESSDVQTVSKPTFLKTSPQDDSGASSASL
                     LDSTKDIPSSNVLQKSTGVNQTLRLKHPSSSKVNSVNPKKPKTNASISETGRGSASSL
                     NMSPSEASSQVVLSNMNTSSIQSAAGKPSLRSCPKCNVKFSLLDPLKCHMKRCCPDMI
                     NKFLETLKSENSKAVSRAIIGSDKEKLIMLVSDFYYGRHEGTIEEDQKAPTTFKCFSC
                     TKVLKNNIRFMNHMKHHLEFEKQNNETWESHTTCQHCYRQYPNPFQLQCHIESTHTPH
                     DFSTICKICELSFETEHLLLQHMKDTHKPGEMPYICQVCQFRSSIFSDVETHFRSSHE
                     NTKNLLCPFCLKVSRMATPYMNHYMRHQKKGIYRCPKCRLQFLTSKEKIDHKLEHRTF
                     IKPKELEGLPPGTKVTIRASLGSIQSRSSSPPSSTIPSTSLQLSVPKSKTTTTKNTTT
                     KNNSKVSANKVTTTSPQTMSTTTGKTNASKPGTGTTKSKAKPSNKQKRQRTRKNKFSI
                     DLRNLRCHQGTHTCIECHSKIKDFSSHFSTYINCDFCKYTTNCNKAFTNHMSSHNDHP
                     SKQLCIFKKHSRALRGITLVCLKCDFLADTSGLDRMAKHLNQRKTHTCQVVIENVTER
                     TGTSESTSDGLLK"
ORIGIN      
        1 tggggcgttc tggcaacagt agctcatttg gcgctggatg tctccagggt tcctgctgtg
       61 gtcactgccg ccgccatttg agtggcaggc aaccggtgtt tcggcgcccc tcccttctcg
      121 ctccgcctcc tccccttctc gcccctcttt ccccctcctc ctgtccttcc ttcttctctt
      181 ccacccgctg ctcctcctcc ttctctgagc tccggacgtc ctgcagcggt ctgggtaagc
      241 cactccgcgc ctcccggctt cagagttgat tcttcaattt gatggataaa gacaactctg
      301 ttcaagaaaa aagtcctggt actgaaattc aggtggacag acttggtgat aattcaaaaa
      361 tggctgaact tatcatggaa tgtgaagaag aagagttgga accatggcag cagaaagtag
      421 aagaaagtca aaataaagat gatgatgatg atgatgatga gttgatcttt gttggagaga
      481 tatcaagttc caaaccagcc atttcaaata ttttgaacag atgtagccct ggttcatctt
      541 caaagggact aaagaatggc tcattcagtc cagctctttc taatatattc aagcctacaa
      601 atcagcacta cagaaatcca ccatctcatc cactgattgc tttgccaagc ttttatcctg
      661 cacccaaatc ttcagagagt tctgatgtcc agactgtgtc taaacctacc tttttaaaga
      721 cttcaccaca agatgattca ggtgcttctt ctgcctcact gttagactca accaaggata
      781 taccgtcctc caacgtactg caaaagagta caggtgtcaa tcaaacttta cgattaaaac
      841 atccttcctc atccaaagta aacagtgtta atccaaagaa gccaaagact aatgcaagca
      901 tttctgaaac aggccgtggc tcagcatcat ctttaaacat gtctccttcc gaggcttctt
      961 cccaggttgt actatcaaat atgaatacct catcaattca gtctgcagcc ggaaaacctt
     1021 cactacgatc ttgtccaaag tgcaatgtta agttcagtct tttggatcct ttgaagtgcc
     1081 acatgaagcg ttgctgccca gacatgataa ataagtttct ggaaactctc aaatcagaaa
     1141 attcaaaggc tgtaagcaga gctatcattg gctcagataa agaaaaattg atcatgctag
     1201 ttagtgactt ttattatgga agacatgaag gaactattga ggaagaccag aaggctccca
     1261 caacttttaa atgcttcagt tgcacaaaag ttcttaaaaa taatattagg ttcatgaacc
     1321 acatgaaaca ccacttggaa tttgaaaaac agaacaatga gacctgggaa agccatacta
     1381 catgccaaca ctgttatcgg cagtatccca accctttcca gctacaatgc cacattgaga
     1441 gtacacatac tcctcacgat ttttctacta tttgcaaaat ctgtgaattg tcatttgaaa
     1501 cagagcatct gcttttacaa catatgaagg acactcataa acctggtgaa atgccataca
     1561 tttgccaggt ttgccagttt aggtcatcga tattttctga tgtagaaact cactttagat
     1621 catctcacga aaacactaag aacttgctat gtccattctg cctcaaagtt agtagaatgg
     1681 caacccctta tatgaatcac tacatgagac atcagaaaaa aggaatttat cgttgcccaa
     1741 aatgcagact acaatttttg acctccaagg agaaaataga tcataagtta gaacatcgta
     1801 catttataaa gcctaaagaa ctagaaggat tgcctcctgg aacaaaagtt actattcgag
     1861 cttccttagg atctattcaa tcacgatcgt caagcccgcc ttctagtact atcccaagca
     1921 cttctcttca gctctcagtc ccaaagtcta aaacaactac tactaagaat acaactacta
     1981 agaataactc aaaagtgtcc gcaaataaag ttaccacaac tagccctcaa acaatgtcaa
     2041 ccacgactgg taagaccaat gcaagtaagc caggtacagg tacaactaaa tccaaagcca
     2101 agccgtccaa caagcaaaag agacagcgca ccaggaaaaa caaattcagc atagatttga
     2161 ggaacttacg gtgtcaccag ggaactcaca cgtgtattga gtgccattcc aaaataaaag
     2221 atttttcaag ccacttttct acatatataa attgtgattt ttgcaagtat accactaact
     2281 gtaacaaagc ctttacaaat catatgagct ctcacaatga ccacccaagt aagcagcttt
     2341 gtatttttaa gaagcattca cgagctctca ggggcatcac tctggtgtgc cttaaatgtg
     2401 acttcctagc cgatacttct ggcttagacc gtatggctaa acacttaaat caacgtaaaa
     2461 ctcatacttg ccaagttgta atagagaatg ttactgaaag aaccggaact tctgaatcca
     2521 cttctgatgg cctgctcaaa tagattcctg ctctgtgaag ctcgtgcaac ctggtgcaag
     2581 acaagttgga atttcctaag ttcaaagttc tgcagtattt gctttcccaa atacagtttt
     2641 ctaagttcaa agttctgagg tgttttctgt gaaggccgtg aaaattcaca acacaagctc
     2701 tcgttatcca gcgctttcca gcttttggat ggcagtagat cttactctct tatccttgtg
     2761 tcaggttaag atatcttaac atgcttttct tctccactcg gctctggaga aggaacttta
     2821 gtgctgtagt ctattcttgc tttgtttcag ataattcgta tttttctctg ctgtactcgc
     2881 cttcagaata ttacatgtca aatggtatag cttgtctggt ttcttttctt ctgttttgtt
     2941 tgcttcttaa tttttttata agtcttggta gtcaaatagc ttttttcccc ttcattcttt
     3001 gtcattggtc tgtttttcag atgcaaaggc aacacagaca acatttcgaa aaaaatgtcc
     3061 agtgtactcc tggacagtgt cccccttcaa tggacacaac tgaatgcctg gtctctcttt
     3121 ccaaggaatg tgatttgact gtgagacctg cttcaatgta tgccttagga ttttatcagt
     3181 tcttaggcag agtcccttcc tacctgactg gcctcccata aggctgatag tgatattgtc
     3241 cattgatgcc tgcaaggtgc accaaataga tttgagcaca acttccctct gagggctttg
     3301 cttcataaga gtaagcttat gagctttttc taatcctgaa aacccatcaa atgagtgaag
     3361 gttttattta tattcttgga aaaacaaact ttgtgaagtt tatggctcca aagtaacagt
     3421 tatttgtgta tcatttaaag ttttagccat tactccacca gttctcaaca attctagtgt
     3481 ttactaattt ttgaaaaatt aaattttaat agcctacttt ttatcattca ccaaatttat
     3541 tatctacatt tgtaatttct gattaattct tttcttttgt gtttgcttaa aatggcagga
     3601 aaattttaaa actcactacg tatttcatgc agctacctat tgttagtttc ttttttcttt
     3661 tttttttctt tctttctttt tttttttttt ttttttgagg catggtctct attatatagg
     3721 cccggctatc ctgatactca ccaggtagat caggctgacc ttgaactcat agatttctgc
     3781 ctgcctcttc ctcccaaatg ctggatttaa aggcaggagt ggtatctgtt cagttcatta
     3841 aacattaata tatttctctc tatcttggga ctatcataac atcttagtgg tcaggaattc
     3901 aagacaaaga acaaagactc cgcttacaga tcttaaaaga agttttaagt tacatcgcta
     3961 ttaacttaga aattatcttc ttagccatta atgtaattcc ttagataaat ataatatatt
     4021 caaaactatt gggaccaaaa atgcacttgt ttcttgccca caaatatata gagagatgta
     4081 tattttttta ttttgctgtt tgtttatttt ggttacatcg aatatagatt tttctgaagt
     4141 ttcgatattt cttatttttt taataaaatt tgtattgtta aacactcttg ggaattattt
     4201 tataataaat aaaattatat aaaaacttgt a
//
