LOCUS       NM_001399753            2693 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 239 (Zfp239), mRNA.
ACCESSION   NM_001399753 XM_008763268
VERSION     NM_001399753.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2693)
  AUTHORS   Arranz,V., Dreuillet,C., Crisanti,P., Tillit,J., Kress,M. and
            Ernoult-Lange,M.
  TITLE     The zinc finger transcription factor, MOK2, negatively modulates
            expression of the interphotoreceptor retinoid-binding protein gene,
            IRBP
  JOURNAL   J Biol Chem 276 (15), 11963-11969 (2001)
   PUBMED   11278819
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000004.1.
            
            On Jan 13, 2022 this sequence version replaced XM_008763268.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.24902.1,
                                           SRR26643290.17669.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                JAXUCZ010000004.1  152701871-152701960
            91-146              JAXUCZ010000004.1  152706076-152706131
            147-2693            JAXUCZ010000004.1  152706782-152709328
FEATURES             Location/Qualifiers
     source          1..2693
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2693
                     /gene="Zfp239"
                     /note="zinc finger protein 239"
                     /db_xref="GeneID:100909657"
                     /db_xref="RGD:6502210"
     exon            1..90
                     /gene="Zfp239"
                     /inference="alignment:Splign:2.1.0"
     exon            91..146
                     /gene="Zfp239"
                     /inference="alignment:Splign:2.1.0"
     exon            147..2693
                     /gene="Zfp239"
                     /inference="alignment:Splign:2.1.0"
     CDS             1227..1832
                     /gene="Zfp239"
                     /codon_start=1
                     /product="zinc finger protein 239"
                     /protein_id="NP_001386682.1"
                     /db_xref="GeneID:100909657"
                     /db_xref="RGD:6502210"
                     /translation="MDEKPYKCDKCGKGFTRSSSLLVHHSVHTGEKPFKCDRCGKGFS
                     QSSKLHIHQRVHTGEKPYECEECGMSFSQRSNLHIHQRVHTGERPYKCGECGKGFSQS
                     SNLHIHRCTHTGEKPYQCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSK
                     LLIHQRVHTGEKPYECSRCGKGFSQSSNLHIHQRVHRKDLH"
ORIGIN      
        1 tgcctgcggc ctgctgggac ttgtagttcg agtcctggat gatgtcccgg agtcctgcgt
       61 taccaggtgt gggttctacc tacgcaagag aattctaaaa acatgaacat gtgagttttc
      121 atgcctgcag tctgcttcca caactggaga gtcaaacaca attctgtgga gaatcttcaa
      181 gagaaaggcc ttcaagagtc tgtcgagatg actcagaaac taagagcacc cctggctcct
      241 gtaagttcag ttcctggcac ccacacagtg cttcagcatc cgtccctcca gttcgaggag
      301 ctccagtgac ctcttccacc tccagcagta ccaggcaggc atgctcggca cagacacact
      361 taacacgtga aataaaagtt cttagcacag gagaaagaga aaagacttca ggccttccca
      421 tagggggctt cttgggggct agtttgggaa gaaatggcca gtcagtaact ggaagttgag
      481 tttgtattgt gaatcttcaa gaagtacaca aggataattg aaatagattg ctgtcaaaaa
      541 tgggaagaag tgtcttgcca tatatccaaa aaccacaaat tgtggtgact ctttaaagtt
      601 atctcacaaa tattgaaagt ggaaaaaaat atttatcttt gaaatcccga gccaaatgtc
      661 cagacaggac tcctctgaga gcttgtgtaa ggagcctcgg tggggaaaag gtctctgtaa
      721 ctgaagaagg agggagagaa aaagaataag gagtattgtc atcccataca ccactgtgct
      781 gagaaccgtc gtcaggcttg ctcctgatgg aacagaactg gcgcctccat cattctctgc
      841 tgagacaact tgccaaaatg tccgttcaaa gactctttag tttcctctga ctgtaacaat
      901 aaagacgttt ttaaatggag gtcgccatta gtcacttgga gtcttcagag agaccacaca
      961 gaggaatcct gtgactggtg attccgaggg gatgcttatc atcaacccag atggtcatct
     1021 cttcaagata atccccacgt cagaacaact ataccctcgt gatcggtgtg gtgaggactt
     1081 cattcagaac tcagaactaa tgtgtcatca gagagaccac ctaaaagaaa aagcctgcag
     1141 gcgagagcat cgtgggaggg gcttcagctg ctctgagctt tgtgggcggg gcttcacaaa
     1201 gtctgtttcc gcatcaagca gtccacatgg atgagaaacc gtacaaatgt gacaagtgcg
     1261 ggaagggctt caccaggagc tcaagtctgc ttgtccatca ttcagtccat acaggtgaga
     1321 aacctttcaa gtgtgacagg tgtgggaagg gcttcagtca gagctcaaag ctgcacatcc
     1381 accagagagt ccacactgga gagaagccgt atgagtgtga ggagtgtggt atgagcttca
     1441 gtcagcgatc aaacctgcac atccaccaac gtgtccacac aggagagagg ccctacaagt
     1501 gcggggagtg tggaaaaggc ttcagccaga gctcgaacct acacatccac cggtgcaccc
     1561 acacaggaga gaagccgtac cagtgctacg aatgcgggaa aggcttcagc cagagctcag
     1621 accttcgaat ccacctcaga gtgcacactg gggaaaagcc ctaccactgt ggcaagtgcg
     1681 ggaagggctt cagccagagc tccaaactcc tcatccatca gagagtccac acgggagaga
     1741 agccgtatga atgcagcagg tgtgggaagg gcttcagcca gagctcaaac ctccacatcc
     1801 accagcgggt tcacaggaag gaccttcact aagtaacatg agcccccctc gggagttcag
     1861 aatactttta ttgtaagaaa aatatttttc atggctgagt gtgcatatca gaggtagagt
     1921 gcttgcctaa catgtataaa gccctgagtt tgagctctag taccccacca cagtttccac
     1981 cttaatactt tgtgcatgta ggaatgtgtg ttcatgcaga gaggggtaca tacatgcatt
     2041 gtgctggtgt gtgcatgcac gtgtgcacgt gtgtggaggt caggtgcgca gatgcttacc
     2101 acgggttttt ttgttttgtt ttgttttgtt tttttttgag actggagatc tgtctgttag
     2161 tcatggcatg gaatgtcacc aagtaagcca ggccagagtc ccaggatcta tctgtctcca
     2221 cttcccacct caccatggct aggattacag gtgtgtgcca cctcactctc ttacatggat
     2281 tctgtctcaa gctttctaga caagaacttt gctgactgag gcatctccga gggccccagt
     2341 ttaatacatt caactcttac ctttgcattc ctcaaaggaa agaagtagta agggttgttc
     2401 acatatagcc cctcacggaa gacaccaatc cttcatttac agcacccgag taccagctct
     2461 tcttatgtta tacaaggaat ggactgtcct ggctcctccc tgggtagagt atatattgca
     2521 attctgctag tgttattcga agtatattcc tcaattttac ctgcaagaac tttgtgtttt
     2581 tccaagcaca gcatggttcc cttctctgag aaactggaat tcatgtttcc tctgaaatga
     2641 tgtgccttgt ttttcatatt ccttttaagt cctaaatagc cctctttaac cta
//
