LOCUS       XM_039109853            2950 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 189 (Zfp189),
            transcript variant X2, mRNA.
ACCESSION   XM_039109853
VERSION     XM_039109853.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109853.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2950
                     /gene="Zfp189"
                     /note="zinc finger protein 189; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:313219"
                     /db_xref="RGD:1306510"
     CDS             115..1917
                     /gene="Zfp189"
                     /codon_start=1
                     /product="zinc finger protein 189 isoform X2"
                     /protein_id="XP_038965781.1"
                     /db_xref="GeneID:313219"
                     /db_xref="RGD:1306510"
                     /translation="MVLPSLMDAPFLDGCSLLGWMLPSLMSAPFPNVLNRNEDEEPTV
                     KEEIEKDIEPQGIIVTRIKSELDQDPMGSETFELVGRLDKQRGIFLWEIPRDSLTEEQ
                     KMFRGHTNVRKRPNSEEKCHKCEECGKRFVRKAHFIQHQRVHTGEKPFQCNECGKSFS
                     RSSFVIEHQRIHTGERPYECNYCGKTFSVSSTLIRHQRIHTGERPYQCNQCKQSFSQR
                     RSLVKHQRIHTGEKPHKCSDCGKAFSWKSHLIEHQRTHTGEKPYHCTKCKKSFSRNSL
                     LVEHQRIHTGERPHKCGECGKAFRLSTYLIQHQKIHTGEKPFLCIECGKSFSRSSFLI
                     EHQRIHTGERPYQCQECGKSFSQLCNLTRHQRIHTGDKPHKCEECGKAFSRSSGLIQH
                     QRIHIREKTSPFKETKGSFDPNCGLVIQQEVYPKEKSYKCDDCGKTFSVSAHLVQHQR
                     IHTGEKPYLCTVCGKSFSRSSFLIEHQRIHTGERPYLCRQCGKSFSQLCNLIRHQGVH
                     TGNKPHKCEECGKAFSRNSGLIQHQRIHTGEKPYRCEKCDKSFSQQRSLVNHQKIHAE
                     VKTQEIYECDACGEAFTCQISLIQHQKLHIMWMQ"
ORIGIN      
        1 agtggggtta tctggatgca gctccgagaa gcctgtataa agatgtcgtg atggacagtt
       61 atggaaagct ggtctcgctg gtctcttcaa taggtgctta ctttctttcg cttgatggtg
      121 ctcccttccc tgatggatgc tcccttcctt gatggatgct cccttctcgg atggatgctc
      181 ccttccctga tgagtgctcc cttccctaat gttttaaaca gaaatgaaga tgaagagcca
      241 actgtgaaag aagaaattga gaaagacatc gaaccacagg gtataatagt tacaagaatc
      301 aaaagtgaac ttgatcagga tcctatgggt agcgaaacct ttgaacttgt tggtaggtta
      361 gataaacaaa gaggaatctt cttatgggaa ataccacgtg attctttgac tgaggaacag
      421 aaaatgttca gaggacacac taatgttcgt aagagaccaa actctgaaga gaaatgtcat
      481 aaatgtgaag aatgtggaaa acgttttgtc cgcaaggccc atttcattca gcatcaaagg
      541 gtccacactg gtgagaaacc ttttcagtgc aacgagtgtg gaaaaagctt tagtcgcagt
      601 tcatttgtta ttgagcatca gagaattcac actggggaac ggccctatga gtgtaattac
      661 tgtgggaaaa cctttagtgt gagctctacc cttattaggc accagagaat ccacactggg
      721 gagaggcctt accagtgtaa tcagtgtaaa cagagcttca gccagagaag gagtcttgtt
      781 aaacatcaaa gaattcacac tggtgagaaa ccccataaat gtagtgactg tggaaaagcc
      841 ttcagttgga aatcgcatct tattgagcat cagagaacac acactggtga gaaaccctat
      901 cactgtacca aatgcaagaa aagctttagt cgaaactcac tgcttgttga acaccagaga
      961 attcatactg gggaaagacc tcataagtgt ggtgaatgtg ggaaagcttt tagattaagt
     1021 acatacctta tacaacacca aaaaatacac actggtgaga agccctttct ttgtattgaa
     1081 tgtggcaaga gtttcagtcg gagctcattc cttattgaac atcaaaggat tcatactggt
     1141 gaacgccctt atcagtgcca agagtgtggg aaaagtttca gtcaactttg caaccttact
     1201 cgtcatcaga gaattcacac aggagacaaa ccccacaagt gtgaggaatg tggaaaagcc
     1261 ttcagtagaa gctcaggtct cattcagcat cagagaatac acatcaggga aaagacttct
     1321 ccattcaagg aaactaaggg aagttttgat ccaaactgtg gtcttgttat tcagcaggaa
     1381 gtctacccta aagaaaaatc ttacaaatgt gatgactgcg ggaaaacgtt tagtgttagt
     1441 gctcatcttg tacaacatca gaggatccac actggtgaga agccttacct gtgcaccgtc
     1501 tgcgggaaaa gctttagtcg gagctcattt cttattgagc accagagaat ccacactggt
     1561 gagagacctt atttgtgcag acaatgtggc aaaagtttta gtcaactttg taatctcatc
     1621 cgacatcagg gtgttcacac tggtaataaa ccccataaat gtgaagagtg tgggaaagcc
     1681 tttagtagga actcaggtct cattcagcac cagagaatac acacaggaga gaaaccttat
     1741 aggtgtgaaa aatgtgacaa aagtttcagt caacagcgaa gccttgtcaa ccatcagaag
     1801 atccatgcgg aagtgaaaac ccaagaaatt tatgaatgtg acgcttgcgg cgaagccttc
     1861 acttgtcaga tttctctaat tcagcatcaa aagttacata ttatgtggat gcagtaaaat
     1921 tagagatatt ttaatgctca aatttgagac tagctaccga agtgcagttt tagtatggcc
     1981 caacatgggt caaatatagt gataaagcaa atacttgttg gcctcatgaa aaatggtttc
     2041 taaagatcta tggatagtgg acaatgcctg ggggaaactg acttgcgatt actagttgct
     2101 ttcatagcca cagagatctg ttgttgattt agctaacctt tcagtagagc tgactgggca
     2161 aagcatatgg gaacggttct gaaggacaca gtgaaatcag tgtacgggaa ctgggagcaa
     2221 ctgatcctgg gaagctaggg ctaattcaga agtcttctat tagcacctcc tgcagttgct
     2281 cttcagtacc atgaagttag gctagacacg tcaaacctca gtgattgggc aatgtaatct
     2341 gtggaagccc agatactctc aaagtcatca aacagtgttt ataactgtca aagaaatttg
     2401 tgtggaaaat ttctccaggg cttcccaggt tgataaaagg catgaattat taagttgtaa
     2461 aggtacttgt tagtgttaac aaccaattaa ggtgttacca aggaatcttt gggagtgcct
     2521 tcccctgagc cccaaaatgg gccccaaaag ataattactg atttattttg tgctgtctca
     2581 tctgtgaaac ctctttgtaa tactgtatca acattacttt attattccca cataatcagg
     2641 aacatgtaaa catgtacgta ttttaattac caagaattgg aaataataat aaaaaaaatg
     2701 acctaaaatg tatgctagag agctgagata ttttggtatt ctttaggtct tatggtagat
     2761 ttgcatgtaa gatttaaatt cttatttctt gatcctcggt cctcctttag ttaacacgca
     2821 tatgcctatt tacctacttt aatcattaaa cctgtttggt gttttggttt gtgcagtatt
     2881 agttgcttta ggataataac actaatggac tactgtgttt tgaacttcag aatcaaagat
     2941 ttgaaagaaa
//
