LOCUS       NM_001271280            3926 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 180 (Zfp180), transcript
            variant 2, mRNA.
ACCESSION   NM_001271280
VERSION     NM_001271280.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3926)
  AUTHORS   Pott,U., Colello,R.J. and Schwab,M.E.
  TITLE     A new Cys2/His2 zinc finger gene, rKr1, expressed in
            oligodendrocytes and neurons
  JOURNAL   Brain Res Mol Brain Res 38 (1), 109-121 (1996)
   PUBMED   8737674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Transcript Variant: This variant (2) contains a differs in the 5'
            UTR and lacks an in-frame portion of the 5' coding region, compared
            to variant 1. The resulting isoform (2) has a shorter N-terminus,
            compared to isoform 1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.1778.1,
                                           SRR26643285.1182.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-343               JAXUCZ010000001.1  88780342-88780684
            344-424             JAXUCZ010000001.1  88783413-88783493
            425-499             JAXUCZ010000001.1  88789755-88789829
            500-623             JAXUCZ010000001.1  88793848-88793971
            624-3926            JAXUCZ010000001.1  88797335-88800637
FEATURES             Location/Qualifiers
     source          1..3926
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3926
                     /gene="Zfp180"
                     /gene_synonym="rKr1"
                     /note="zinc finger protein 180"
                     /db_xref="GeneID:246279"
                     /db_xref="RGD:631380"
     exon            1..343
                     /gene="Zfp180"
                     /gene_synonym="rKr1"
                     /inference="alignment:Splign:2.1.0"
     exon            344..424
                     /gene="Zfp180"
                     /gene_synonym="rKr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             374..2326
                     /gene="Zfp180"
                     /gene_synonym="rKr1"
                     /note="isoform 2 is encoded by transcript variant 2;
                     Cys2/His2 zinc finger protein (rKr1)"
                     /codon_start=1
                     /product="zinc finger protein 180 isoform 2"
                     /protein_id="NP_001258209.1"
                     /db_xref="GeneID:246279"
                     /db_xref="RGD:631380"
                     /translation="MEQQDDESPETLQACVENFVLPQEMIIEVEGEDAGSLDILPQES
                     TDFKIVTVDLTEEGQSTWSKAQRTPERPVTLAGPGRDLWDSTAVHRTEETTSKQTVFD
                     EEPSHGSKPEVLARDDPWLSSCEEQLEKQQDKQEEGVLTQGSAGPPETVYGDPGFDRS
                     CLSTSRPSFPMIPLRNHFHKQASHVKKLHGDVANSHQQINNNADFFEDDKSGKVPQSL
                     HPTQCIRTPKGKKACEFNGRVQPFGQGVPLNLNQKVHLEGKSFGFKGRGQVLNRNIVL
                     NEQQKLLIKEGQYKCSKTAPSPSLPQNLRNYSEEKRFECKYCGKSFSWSSHLIAHQRT
                     HTGEKPYKCNLCGKFFTRSSHVVSHQRIHTGEKPYRCNLCGKSFTQRYVLVVHQRTHT
                     GERPYECNQCGKSFRQSYKLIAHQRTHTGEKPYECTQCGKSFIQSYKLIAHQKIHSGE
                     KPYECSHCGKSFSQSYKLVAHQRTHTGEKPFECNYCGKSFSWSSQLVSHQRTHTGEKP
                     YECNECGKSFNRSSHLVMHQRTHTGEKPYQCKQCGKSFSQSYVLVVHQRTHTGEKPYE
                     CGQCGKTFRQSSCFTQHQRTHTGEKPYECNQCGKTFSLSARLIVHQRTHTGEKPYKCS
                     QCGKAFISSSKRSRHQATHSEESCKS"
     exon            425..499
                     /gene="Zfp180"
                     /gene_synonym="rKr1"
                     /inference="alignment:Splign:2.1.0"
     exon            500..623
                     /gene="Zfp180"
                     /gene_synonym="rKr1"
                     /inference="alignment:Splign:2.1.0"
     exon            624..3926
                     /gene="Zfp180"
                     /gene_synonym="rKr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttccgggt ttagccggca gcgcagccat ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt
       61 atgtgtgagt gtgtgtgtgt atgtgtgtgt gcgtgcgtgt gtgtgtgtgt gtgtatgtgt
      121 gtgaaggcgc cttcagtggc ccggctttgt ggctgggctc agtctgcacg gagcgaccta
      181 gcggatgctg actcgaagtg gaggccagac cccggccact cgaatcatgt cggatgtgct
      241 tcaggatcgg ggcaggaagc ggtgagcccc atttcgttct gacgttgagt cgtcagcggc
      301 tcagacccgc cccagcccac accaagggct ctcggacctg cagcttggca ccacgccaca
      361 cccggagggg accatggagc agcaagatga tgagtccccg gagaccctgc aggcctgtgt
      421 ggagaacttt gttctacccc aagagatgat catcgaagtg gagggagaag atgctgggtc
      481 actggacatc ttgcctcagg agagcacaga cttcaagatt gtgactgtgg acctcacgga
      541 ggagggacag agcacttgga gcaaggccca gagaacccca gagagacctg tgaccctggc
      601 aggccctgga agggacctgt gggattcgac agctgtacac agaacagaag aaacaacctc
      661 aaagcagacc gtctttgatg aagaaccatc ccatggatcg aagccagagg tgttggcaag
      721 agatgatcct tggctttctt catgtgagga gcagttggag aaacaacagg acaagcaaga
      781 ggagggggtc ttgacccagg gtagtgctgg tcctcccgag actgtctatg gggatcctgg
      841 ctttgacagg agttgcctga gtaccagccg gccttcattc cccatgatac ctctcagaaa
      901 ccattttcat aaacaagcgt cacatgttaa aaagttacat ggtgatgttg caaatagtca
      961 ccaacagatc aacaacaatg cggatttctt tgaagatgac aaatctggga aagttcctca
     1021 gagtcttcat cccactcagt gtataagaac cccgaaagga aagaaagcct gtgaatttaa
     1081 tggtcgtgtt caaccctttg gccaaggtgt gcccctaaat ctaaatcaaa aagttcattt
     1141 ggaaggtaaa agctttggct ttaaagggcg cgggcaagtt ttgaaccgta acatagtcct
     1201 caatgagcaa cagaagcttc tcattaaaga aggccagtat aaatgtagca aaaccgcccc
     1261 aagtccgtct cttccccaaa acctgagaaa ctactctgag gagaaacgct ttgaatgtaa
     1321 gtactgtggc aagtccttca gctggagctc ccatctcatt gctcaccaaa gaacccatac
     1381 gggggaaaag ccgtacaaat gcaacctgtg tgggaagttc ttcacccgga gctcacacgt
     1441 cgtttctcat cagaggattc atactggaga gaaaccatac aggtgcaatc tgtgtgggaa
     1501 gtctttcacc cagaggtatg tgctcgtggt gcatcaaaga actcacactg gcgagcgtcc
     1561 ttatgaatgc aaccagtgtg ggaagtcgtt ccgccagagc tacaaactca ttgcgcatca
     1621 aagaacccac acaggagaga agccgtacga atgcacccag tgtgggaagt cattcatcca
     1681 gagttacaag ctcatcgcgc atcagaaaat tcactctgga gaaaaacctt atgagtgcag
     1741 tcactgtggc aagtccttca gccaaagcta taagcttgtt gcccatcaga ggactcacac
     1801 aggagagaaa cccttcgagt gtaactactg tgggaaatca ttcagctgga gctcccagct
     1861 ggtgtctcat caaagaaccc acacgggaga gaagccttac gagtgtaacg agtgtgggaa
     1921 atcattcaat cgcagctcac accttgtcat gcaccagaga actcatactg gagagaagcc
     1981 gtatcagtgc aagcagtgcg ggaaatcttt cagtcagagt tacgttcttg tcgttcacca
     2041 gaggacacac actggggaaa agccctacga gtgtggccag tgtgggaaga cattccggca
     2101 gagctcctgc tttacccagc atcagaggac tcacaccgga gagaagccct atgagtgtaa
     2161 tcagtgtggg aagaccttca gcctaagtgc ccggcttatc gtccaccagc gaacccacac
     2221 tggggaaaag ccctacaaat gcagccagtg tggcaaagcc tttattagca gttctaagcg
     2281 cagtaggcac caggctactc acagcgagga gtcctgcaag tcctgaccag ttgagagtct
     2341 gagctggagt tgactcctgt cagtccaatc ctctgaagtt ccgtctgaag gaatgcactt
     2401 gaccagaagt gtcagtgtga gaagaatgca cacaggcctt tcctcacccc gtgtcagtga
     2461 cagaaaggag taagtaaggc cttcggtttg gcagatgtgg ataagaggtc cctgtagaag
     2521 aaaagctgtt acaccctggc agtggcgcgt actaggatga ctgcaggcat cgtccctaag
     2581 ccaatctcaa aaggccacct ttaactgtca gaaatcgttt cccaaagcac tctgtgtaca
     2641 gagaaggcag aagctagact tagaaaaact gaatgctaga tcaaatactg caagcttagt
     2701 gcagaagccc tcttgttggt gagttcggcc tggtccttga gagcacagct tctctgttgc
     2761 aaagctggca ccctgtagat ttcgttcagg aggtgtgcat tctaaatgct cttacttagg
     2821 gaagttaact gctggccagc agctttgctc tcctcctgct ggctcttttc cttcatgcta
     2881 ctaggtggct aagccacgac ctcccgcctt atccccccgt gcagagtcct catacctact
     2941 cacttcaggc aggtgagcca ttcgatccct catttatgca ggcttaacca gtcaggttcc
     3001 agtcatagcc aaacgtaagc tcacttcgga gtaccctact gctcttcaaa ggagctgctt
     3061 ttctatcgca aagatttctc ttatgctgtc cttactagtc attccgtgcc atcaggagac
     3121 aacataggag tcactgcctt agagtgacag gtggccattg agttgtcggg gccctagtct
     3181 gctaaaccaa gctcatctga gccaaggaat ggactccctt gtcctcaaag ccccctacag
     3241 tattgctgtg gatgctggcc atgagctgga agggtcagga aatccacaag cagggttaag
     3301 cttggaccag catggaggtg aacctgtgct aaaaacccat gactagtgag gctgagtcaa
     3361 gaggcttgtt caagccagcc tgtgttacat agcaaaactg tcttgaaaga aagagaaaga
     3421 aaaagaaaga aaacaaactc gtcctatgtg tactcctaca tacatactaa acgttcgttc
     3481 ttttccctga agaaagaaag cactcagatc ctagtctcag agaacctaat tcgaaaacca
     3541 atggcctttc ctaagagact tacgtcaacc gttgactggc ggatgtgctg tggtgactca
     3601 acttagacct tacgttggat cagggtattt gaccatgtca gtctgcctag ttgccctgat
     3661 tggtagtttg ttacttgttt tatacacttc tgttaaatgt gaagattttc tacaactaag
     3721 gcaaatggcc agtggaaatc aaacacatgt caagagcata gaaactctgg aacctccttg
     3781 agaaagtgtt tatgtatagt gtgaagttga aaagggatac taagctattt attgataccg
     3841 ttgtttattt gttatctctc cgagatgcat gttgtgctat ataacatggt acaaggaata
     3901 aaaatttatc tgaagcaaaa aagtaa
//
