LOCUS       NM_001421389            3952 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 174 (Zfp174), mRNA.
ACCESSION   NM_001421389 XM_006245839
VERSION     NM_001421389.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3952)
  AUTHORS   Yin,Y., Morgunova,E., Jolma,A., Kaasinen,E., Sahu,B.,
            Khund-Sayeed,S., Das,P.K., Kivioja,T., Dave,K., Zhong,F.,
            Nitta,K.R., Taipale,M., Popov,A., Ginno,P.A., Domcke,S., Yan,J.,
            Schubeler,D., Vinson,C. and Taipale,J.
  TITLE     Impact of cytosine methylation on DNA binding specificities of
            human transcription factors
  JOURNAL   Science 356 (6337) (2017)
   PUBMED   28473536
REFERENCE   2  (bases 1 to 3952)
  AUTHORS   Ivanov,D., Stone,J.R., Maki,J.L., Collins,T. and Wagner,G.
  TITLE     Mammalian SCAN domain dimer is a domain-swapped homolog of the HIV
            capsid C-terminal domain
  JOURNAL   Mol Cell 17 (1), 137-143 (2005)
   PUBMED   15629724
REFERENCE   3  (bases 1 to 3952)
  AUTHORS   Williams,A.J., Khachigian,L.M., Shows,T. and Collins,T.
  TITLE     Isolation and characterization of a novel zinc-finger protein with
            transcription repressor activity
  JOURNAL   J Biol Chem 270 (38), 22143-22152 (1995)
   PUBMED   7673192
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On May 18, 2023 this sequence version replaced XM_006245839.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR21887620.1942560.1,
                                           SRR26360172.228236.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1068              JAXUCZ010000010.1  12181622-12182689   c
            1069-1288           JAXUCZ010000010.1  12180482-12180701   c
            1289-3952           JAXUCZ010000010.1  12174540-12177203   c
FEATURES             Location/Qualifiers
     source          1..3952
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..3952
                     /gene="Zfp174"
                     /gene_synonym="Znf174"
                     /note="zinc finger protein 174"
                     /db_xref="GeneID:102551846"
                     /db_xref="RGD:7498198"
     exon            1..1068
                     /gene="Zfp174"
                     /gene_synonym="Znf174"
                     /inference="alignment:Splign:2.1.0"
     CDS             667..1887
                     /gene="Zfp174"
                     /gene_synonym="Znf174"
                     /codon_start=1
                     /product="zinc finger protein 174"
                     /protein_id="NP_001408318.1"
                     /db_xref="GeneID:102551846"
                     /db_xref="RGD:7498198"
                     /translation="MAAKMEITLSNPTEDSDKQERHIIMKLEEKRTPTQRKASPDPEL
                     SRQSFRHFCYQEVSGPQEALSCLRQLCRQWLRPELHTKEQILELLVMEQFLVILPPEI
                     QAQVWHRYPKSSREIVTLVEDLHTASKKPKQWVTVCMQGQKVLLEKTGAQLIEQELRD
                     FQPQTPSRDIQENSLEEPSWERSHEQLSPHHWEKSLLQEPALRLTETESSRMRSDDKE
                     NPHPEGTRGAKACTVLRGRPKGGTLHSPEPGGVTASDPRLLQWQVRPPQSPKPLPHYQ
                     RHCRELEYISNPLRGPPLRELKRSRGGRRSLSSLLQRLGHQAAHSAKPYRCDDCGKSF
                     TWNSELKRHTRVHTGERPYICGECGNCFGRQSTLKLHQRIHTGEKPYQCSHCGKCFRQ
                     SSNLHQHHRLHHGN"
     exon            1069..1288
                     /gene="Zfp174"
                     /gene_synonym="Znf174"
                     /inference="alignment:Splign:2.1.0"
     exon            1289..3952
                     /gene="Zfp174"
                     /gene_synonym="Znf174"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctccggccc cgcccctaga ctgtgctcta ggttcccggt gtccagtctc tggaaaggtg
       61 ggtcacctgc aggctggcgc tggcttctaa gctgcctcag aacttggcgt cgcaggtggc
      121 tactggagct gacacccaac actgcggtgg acctgcgtgt ccccttgctg cagcctcgcc
      181 aggccgagct ggctgggccg ccgcggaacc gcattcccta cccctaacca cgttgtggcc
      241 gcgctgtggc cttggctctg cttcgctctg aggtactgga tcaggtcggt gtctgccaga
      301 tgcgggagag ttggtgcgag ctacccgcaa gatatcttaa actttccctg gggattcctc
      361 taccagcctg ttagatcgtg ttgtgaattt cgccagatac caaaataaaa tactccttcc
      421 agtgcccttc tgggacgtta tgacttttct ccttaaaaac tgacgaaaag accaggaact
      481 atcttgtctt cagagtctgg gataaagact agcagatgat aaaagtatgt ctttgtggcc
      541 cttccctaac acttccaagg agcttcattc ctaacatttt tctagccatc agatttctcc
      601 agagcaatga cccagaagac gtaatcagtt cgtgattaga gtgacattgt tcccagagcc
      661 cccaagatgg cagctaaaat ggaaataact ttgagtaacc ccactgagga ttctgacaag
      721 caagagagac acataataat gaagctggaa gaaaaacgca cccccactca gcgaaaagcc
      781 agtcctgatc cggagctttc tcgacagagc ttcagacact tttgttatca agaagtgtct
      841 gggccccagg aagcgctctc ctgccttcga cagctctgca gacagtggct gcggcctgaa
      901 ctacacacta aagagcagat tttggagctc ttggtgatgg agcagtttct ggtcatccta
      961 cctccagaga tccaggcaca ggtctggcat cgatatccaa agagcagcag ggagattgtg
     1021 accctggtgg aagatttgca cacagcgtct aaaaaaccaa agcagtgggt gaccgtttgt
     1081 atgcaagggc agaaggtgct cctggagaaa acaggagctc agcttataga acaagaactt
     1141 cgagactttc aaccccagac tcctagcaga gatattcaag agaactctct ggaagagcct
     1201 tcctgggaaa gatctcatga gcagctgagt ccccaccact gggagaagtc tctcctccag
     1261 gaaccagccc tcagattgac tgagacagag tcctccagaa tgagaagtga tgacaaggaa
     1321 aatccacacc cggagggcac cagaggcgca aaggcatgca cagtcttacg tggaagacct
     1381 aaagggggta ccctgcacag ccctgagcca ggaggggtga ccgcaagtga cccccgattg
     1441 ttgcagtggc aggtcagacc cccacagtct cccaagccac ttccccacta ccagagacat
     1501 tgcagagagc tggaatatat cagcaacccc ctcaggggac ccccgctgag agagctaaag
     1561 agaagcagag gaggcaggag gagcctgagc agccttctgc agcggcttgg tcaccaggca
     1621 gcccactcag ccaaacctta cagatgtgac gactgtggga aaagcttcac gtggaattca
     1681 gagctgaagc gacacacaag agtgcacacc ggggagagac cctacatctg tggggagtgc
     1741 ggaaactgct ttgggaggca gtcaactctg aaactgcacc agagaatcca cactggggag
     1801 aaaccatacc agtgcagcca ctgtggcaag tgctttcgcc aaagctcaaa cctccaccag
     1861 caccataggc tccaccacgg gaactgaagc ggtgctgttt gctgtagagt cctagggaaa
     1921 ggcttctggt ctcgcccttc tcttactggc ctgtttatca cagagtatct ttttgactca
     1981 caacagagcg agcgagcgat cggcccgtgg ggagtgatgg gtgaataatc aagtggaaag
     2041 gacctcaaaa agaggccgat ggggcttctg ggtaaggaca gctgatccgg gtgtgggccg
     2101 ccgagagctg cggtctcggc agagtgaagg ccggttactg aggatgagct gcaggtggct
     2161 tcaattaatt aattaatcct taattaaatt ctccttgttg ctttctcttc taaaatagag
     2221 ttgttttcat gtgcacactt gagcagtgct caagaatacc aagaaagcag tgaccggaga
     2281 gtcctccata gtctttctgc agctaacttt tttagtggtg atggcttttc attacttatt
     2341 tttaagacca gtctctctac atagccatgg cagtgctgga actcactctg tagaccagtc
     2401 tggcctggat ctcagagctc tacctgcctc tgcctcccaa gagctcgtaa aaacgtgtgt
     2461 gaccccacac cctgctgtaa cttcttaaca aaacacaatt tgagaatagg gatatattta
     2521 tgtgatgtaa cacttcctaa gtaagtagat ggcactttca tttaagttat attcgaggga
     2581 tcttttgatt tacaaaaggc gtcccaactc tagcccaggc tataagggag agcccccggg
     2641 agaaggaagt acggctctgg agggcagggg attctccgtt ctcgagtaac ccattagctt
     2701 taacactgtg actaggcatg ctcagtgtct acagttaggt catggggtgg gtatacggtt
     2761 aaggactgca ggaaagttat tgagatagat taaattatga taggtgaatt gtacctccat
     2821 agcctttttt aaatgacaga ataatatatt tatataaaat gttagagttc cagaacaggg
     2881 tctgggacac ctttccatac caaaatcttg ttttcttaaa gtagaaagta gagcccagtc
     2941 agtagttacc ctggagaagg cgtcctcttt ctctgtccag cagattgtgt gtgtgtgtgt
     3001 gtgtgtgtgt gtgtgtgtgt gtgtgtacat atatacacat acataaacgt attatatatc
     3061 atggtggcca ttcttctgaa ggcatcaata tcaagtcact gcctttacct tatattcagc
     3121 ctggccttac acacacacac acacacacac acacacacac acacacactt tcctctagac
     3181 caccttctct gctgccttgt agtaacttct tagtcatgtc tgaatttgtt ttctactggt
     3241 gctataacag ttgagtgcaa acatgttgtg tatggcaggg taatccccac atctcaagat
     3301 cttcagtagt ataaaacgtt ccttttgtgg aggaccgtta tttggtcaac ttactatgtc
     3361 tgtgtgtctt gggttaactt ggtcactaaa aggggatctc caaatgtggg gagccaactt
     3421 gcctgagacc ccaacattga gctaattagg acacacaaag aatatatttg agcttgaagg
     3481 acaagctcag tggaaaaaac ctaatgttct agataaactt acagaagtgc tgataccaat
     3541 ctggtggtcc aataggtttg ccaagtggag gctcctgacc ttttgttgga gccagcttcc
     3601 tacagacccc tacagacccc tacagacccc tacagacccc tacagacccc tacagacccc
     3661 tacagacccc tacagacccc tacagacccc tacagacccc tacagacccc tacagaccca
     3721 gggcttgtga ccttttgctg ggagccaatt tcctacagac ccacagattg tgaccttctg
     3781 ctaagggtca acttcctacc agacctaggc caacatccta caggggtgag ccagctaccc
     3841 tattggctag tacatcaggg tctcccggcc ccctgaagac ttcctcttcc ccctgcctta
     3901 ctactgtata taaccagagc ctgcaagcat taaactcgtc acctcgatca ga
//
