LOCUS       XM_006227998            5389 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 160 (Zfp160),
            mRNA.
ACCESSION   XM_006227998
VERSION     XM_006227998.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006227998.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1490              JACYVU010000023.1  5643937-5645426
            1491-1584           JACYVU010000023.1  5646132-5646225
            1585-1711           JACYVU010000023.1  5656816-5656942
            1712-1840           JACYVU010000023.1  5657484-5657612
            1841-3414           JACYVU010000023.1  5662855-5664428
            3415-5389           JACYVU010000023.1  5664430-5666404
FEATURES             Location/Qualifiers
     source          1..5389
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5389
                     /gene="Zfp160"
                     /note="zinc finger protein 160; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: deleted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 4 ESTs, 56
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 39 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100365363"
                     /db_xref="RGD:2319215"
     CDS             1570..3582
                     /gene="Zfp160"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: zinc finger protein
                     665-like"
                     /protein_id="XP_006228060.2"
                     /db_xref="GeneID:100365363"
                     /db_xref="RGD:2319215"
                     /translation="MAVAQGQLTFSDVAIEFSQEEWDCLDHAQRALHRDVMLENYSNL
                     VSLGMTLQSLNAVSKLEQNKGPWTVESEAIITRKSNVQEYAIAMNAENIDCMEAKSIS
                     NGSSILSSDRIFLSGDKAPFVHEYDVYSSLLMKGQKAAIKEKPYQCNECDKVFRYTSS
                     LAYHRQIHTGEKLYKCVECGKAFFRRSYLLVHERHHSGAKPYKCNECGKVFSQNSHLK
                     SHRRIHTGEKPYKCNDCGKAFSVRSNLTHHLVIHTGDKPYKCNECGKVFSQTSSLTIH
                     RRTHTGEKPYRCNECGKVFSSHSNLNTHQAIHTGEKPYKCSECGKVFTQNSHLANHWR
                     THTGEKPYKCNECGKAFSVYSSLTTHLAIHTGEKPYKCEECGKVFTQNSHLANHRGIH
                     SGEKPYKCEECGKHFNQTSNLARHWRVHTGEKPYKCSECGKAFSVRSSLTSHQVIHTG
                     EKPYKCAECGKVFSQTSSLSIHQRIHTGEKPYRCNECGKAFNSHSNLNTHQVIHTGQK
                     PYKCLECGKVFTQNSHLANHHRTHTGEKPYKCNECGKAFSVYSSLTTHQAIHTGEKPF
                     KCNECGKVFTQNSHLASHRRTHTGEKPYKCSKCGKAFSVRSSLTTHQAIILEKNLTHV
                     VNVAKSLVEVPTLQVIKDFMLNRKLCQYSKVFRHDSLLAQHPGIQP"
ORIGIN      
        1 cagcggagcc aggcgagggg tgtccagaga ggatgcagcc tggaagaagc agggacacgg
       61 atgtagaagc ttctgcggtg gggggaggat acacgactag cgcttgtgtg ggcagtgcgg
      121 gggattcggg actaggagag ctagagaggg ctgcaggtaa cagagtggca gaggaacagc
      181 gtgccgaggc gccgggtgga agggagaaga aagcagggaa gtggagagga gagggagaga
      241 acagctaagc tgccagagtg ttgcgggctg tatgagggaa aaaaaagcag gagatggaag
      301 cgaaagggga tgtatctggt cagaccttcc aagaccaagt tctcagtaaa aaggtttatt
      361 tgccctagag ggatagaggt caaagacagg agatagagga agaagggaaa gggaacaaag
      421 aagagggcag aaggggggca agtagtattt gtccaggagt gggacaaagg actgcttcta
      481 gataaagagg agacacatgt gacctatagg caaatggcgg tttatagagg taaaatgaga
      541 atccctgtgt taggacaagg tgtttaattt taatttggca tattaatttg gtgagtcaaa
      601 ggtgcctttt ggttaccaga ctttaatgat ttgataaatg ggccttcata gtcagcccca
      661 ggaggaggga ttggccaaat aagggagtag accttggggg tagctttagg aatgtaatct
      721 aagagttttt aacaaggccg agagaggaaa gggcaaggcc taccagagtc atggtcacca
      781 tgctggagct ggcaaagtcc cttcagaaag ggtaaatgag atagtgaaga atgagggagg
      841 ggcaggctgg ataagggaga tgttgatgga ataataaggt tgttattacc gagcttgatt
      901 ctgttggtga aaaaaaaaaa actttaactt ttgtttaagt tttagtagta tggaagagag
      961 ttgcaaaact tgaatctgat tggcattaac tggtacagtg ttaggcatgg cggcacagat
     1021 cagtaaggcc agaatgtgga aagaaagctg gggttagaaa atggagttta acctagcctg
     1081 gaataaatca ctaagacact ttctcaatgt gtaaatactg ttgcggttag aagtttactg
     1141 accctttata gtccttatac aattagaact gatgtgacat ttttagacaa tgtcaccctt
     1201 ctttgaaagg ggtgtggtgt ggaggagcta gctctctgtc aggcaccaat ttcgtgttat
     1261 gagctttaac tcatatcttg ctcacttcct gaagataata tcgaatgcca cattttcaga
     1321 caattctccc cttttacttt caagtcctgt gacctgaata taacctacta tcacgagtgc
     1381 tgttaatgta cttgcccagc tctagattca cagggaaatg gtttggttag gtttacccat
     1441 tacgagaaac aagacagagg aaagaggtga ccatctcaga agactctcct gactgacttc
     1501 taaaccctca tgttgtacaa ggaagaacct gggaggagga gaagaaagag gaaataaaaa
     1561 gatccagaaa tggctgtcgc tcagggacag ttgacattca gtgatgtggc catagagttc
     1621 tctcaagagg aatgggactg cctagaccat gcacagaggg ctttgcacag ggatgtcatg
     1681 ttggagaact acagcaacct ggtctccctg ggaatgacac ttcaaagtct gaatgctgtg
     1741 tctaagttgg aacaaaacaa aggaccctgg accgtggaga gtgaggcaat aataaccaga
     1801 aaatcaaatg tacaggaata tgccatagct atgaatgcag aaaatattga ttgtatggaa
     1861 gctaagtcca tcagcaacgg ctcttcaatt ttgtcctctg acagaatttt tcttagtggt
     1921 gacaaagcac cctttgttca tgaatatgat gtttattctt cactacttat gaaaggacag
     1981 aaagcagcca ttaaggaaaa accttatcaa tgtaatgaat gtgacaaggt cttccgttat
     2041 acttcttctc tagcatatca tcggcaaatt catactggag agaaacttta caaatgtgtt
     2101 gagtgtggta aggctttttt tcgacgttct taccttttgg tacatgagag gcatcattct
     2161 ggagcgaaac cttacaaatg taatgaatgt ggtaaggtct tcagtcagaa ttcacacctt
     2221 aaaagtcacc gaagaattca tactggtgag aagccataca aatgtaatga ttgtggcaaa
     2281 gcctttagtg ttcgttcaaa cctaactcac catctggtaa tccatactgg agataaacct
     2341 tataaatgta atgagtgtgg caaggtcttc agtcaaacct caagcctcac gatccatcga
     2401 aggactcaca ctggagagaa accttatagg tgcaatgagt gtgggaaagt attcagttca
     2461 cattcaaacc taaataccca tcaggcaatc catactggag aaaaacccta caaatgttca
     2521 gagtgtggca aggtctttac tcagaattca catcttgcaa atcactggag aacacataca
     2581 ggagagaaac cttacaagtg taacgagtgt gggaaagcct ttagtgtgta ttccagcctc
     2641 actacccatc tggcaatcca tacaggagaa aaaccctaca agtgtgaaga atgtggcaag
     2701 gtcttcactc aaaattcaca tcttgcaaat catcgtggaa ttcacagtgg ggagaagcct
     2761 tacaagtgtg aagaatgtgg caaacacttc aatcaaactt caaatcttgc aagacattgg
     2821 agggttcata ctggagagaa gccttacaaa tgcagtgaat gtggcaaagc ttttagtgtg
     2881 cgttctagcc tgacttccca tcaagtaatc cacactggag aaaaacctta caaatgtgct
     2941 gaatgtggca aggtcttcag tcaaacttca agcctttcaa tccatcagag aattcacact
     3001 ggagagaaac cttacaggtg caacgagtgt gggaaagcct ttaattcaca ttccaaccta
     3061 aatacccatc aggtaatcca tactgggcaa aaaccctata aatgtctgga atgtggcaaa
     3121 gtgtttacac aaaattcaca tcttgcaaat catcacagaa cccatacagg agagaagcct
     3181 tacaaatgta atgagtgtgg caaagccttc agtgtgtatt caagtctgac cacccatcag
     3241 gcaatccata ctggagaaaa accttttaag tgtaatgaat gtggtaaggt cttcactcaa
     3301 aattcacacc tagcaagtca ccggagaact catactggag aaaaacctta caagtgtagt
     3361 aagtgtggta aagcctttag tgtgcgttca agcttgacta cccatcaggc aatcattctg
     3421 gagaaaaacc ttacacatgt agtgaatgtg gcaaagtctt tagtcgaagt tccaaccttg
     3481 caagtcatca aagacttcat gttgaacaga aagttatgtc aatatagcaa ggtcttcagg
     3541 catgattcac ttcttgcaca acatccagga atccaaccct aagaaaatat tggtattgtg
     3601 ttaatgataa gtacccatca tgagttcaaa tatgtcattg gatgtcctgg tatgcatgta
     3661 caaccacaca ctttctaagg tgttgtagga ccactgtctg cccgggatat ataggaaaaa
     3721 tgtgatttaa aattaaaaat aatggactgg agagatggct cagcggttaa gagcactggc
     3781 tgctcttcca gaggtcctga cttcaaatcc cagcaaccac atggtggctc acagccatct
     3841 gtaatgggga tccgatgcct tcttctggtg tgtctgaaga cagcaacagt gtattcatat
     3901 acattaaata aaatctttaa aagaattaaa aataaatcaa actcttatag acacatatcg
     3961 tattaagaag acatttcaaa catgtagaga agatgcttca ggatatgatt ccctctataa
     4021 acatcaaaat gcacattgtt gatgaactca tctagcttgc acttactgag aatgctattt
     4081 aatgactatt acagtaaagg gtgaatggaa ggaattactc agcctcttgt tttcatggct
     4141 agtctctcat gttacgttcc acagaataat tgctagttac tgaacaatta gctaaaaact
     4201 tgctaaaaca caatatattt gaaaggtgga aggcatttga tatttgcctt cagtattcat
     4261 atactcattt atttatggtc cttgcaaaat ctgctttgcc atttatgatt gttatctgca
     4321 actttctggt gatgcaatac ctgcctcagg gcattttatt gcagcctctg gaaaaaacag
     4381 aatagtcaca ttagtaggaa agaatcatgt ctggttctga gaatgactcc attccacgtt
     4441 ttgaattaag tactgactaa gttatttttc taatttgtgt ttagtttttg tattaaattt
     4501 catgactaaa gctaatgtgg ggagaaaagg gtttatttca tcttatgtgt tatagttgat
     4561 caacagaagt cagggtaaga gtttgagtag gaacctggaa gcagggaata aggaagacaa
     4621 tggagaaata atacctgctg gcttgccttt catggcttag cttttttgta caacccagga
     4681 ccacctacca agggatggca ctgcctaaag ctatctaggc ctcttatgtc aatcattaat
     4741 aaagaaaacg cttgacagaa attttcagac cagactgatg gatgtgattt cttaagtgtc
     4801 cctcttctct ggtaactcta gtttgtggca agttaaaaag atataaccag atcatttatc
     4861 atctgaaagg gacaggatat tgtaaaatta caatgtaaag ttatcaagtt tattgtgtat
     4921 gataggggca ttctgtgggg cagaagcaat taggttggaa agaaatgatc taccatctga
     4981 tcatgaggta caaaagctgc cacaaaattt ggatactgca ttttttatga aatacacttt
     5041 gtcaaataac tgcagaagac atagtaaacg tgtatattgg atgataacag gtttcatgta
     5101 ggaaataata atttttccta cttttaaaat taaagtgaga aacaccatta ggatggaaaa
     5161 tttaacccca aaatgtgtag gactgtgtgt atagctagtg gagaagcact tgtgtcatgc
     5221 atgtcaggcc ccaagtccaa tgctcagcag caccaaaagt aaaaattcca cacaatgttt
     5281 cttaagagtg acatcattta actactgttg ttaagttttc ccactgtctt gttcaaaaca
     5341 tcactaatca aacttttagc taatgaaatt aaaggtttta ttttccaat
//
