LOCUS       NM_001012169            3038 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus zinc finger protein 143 (Zfp143), mRNA.
ACCESSION   NM_001012169 XM_341905
VERSION     NM_001012169.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Hernandez-Negrete,I., Sala-Newby,G.B., Perl,A., Kunkel,G.R.,
            Newby,A.C. and Bond,M.
  TITLE     Adhesion-dependent Skp2 transcription requires selenocysteine tRNA
            gene transcription-activating factor (STAF)
  JOURNAL   Biochem J 436 (1), 133-143 (2011)
   PUBMED   21352097
REFERENCE   2  (bases 1 to 3038)
  AUTHORS   Dumay-Odelot,H., Durrieu-Gaillard,S., Da Silva,D., Roeder,R.G. and
            Teichmann,M.
  TITLE     Cell growth- and differentiation-dependent regulation of RNA
            polymerase III transcription
  JOURNAL   Cell Cycle 9 (18), 3687-3699 (2010)
   PUBMED   20890107
  REMARK    Review article
REFERENCE   3  (bases 1 to 3038)
  AUTHORS   Barski,O.A., Papusha,V.Z., Kunkel,G.R. and Gabbay,K.H.
  TITLE     Regulation of aldehyde reductase expression by STAF and CHOP
  JOURNAL   Genomics 83 (1), 119-129 (2004)
   PUBMED   14667815
REFERENCE   4  (bases 1 to 3038)
  AUTHORS   Kubota,H., Yokota,S., Yanagi,H. and Yura,T.
  TITLE     Transcriptional regulation of the mouse cytosolic chaperonin
            subunit gene Ccta/t-complex polypeptide 1 by selenocysteine tRNA
            gene transcription activating factor family zinc finger proteins
  JOURNAL   J Biol Chem 275 (37), 28641-28648 (2000)
   PUBMED   10893243
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 3, 2021 this sequence version replaced NM_001012169.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083578.1, SRR26360194.185265.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                JAXUCZ010000001.1  173543884-173543950
            68-187              JAXUCZ010000001.1  173553560-173553679
            188-280             JAXUCZ010000001.1  173553993-173554085
            281-364             JAXUCZ010000001.1  173555185-173555268
            365-448             JAXUCZ010000001.1  173555968-173556051
            449-645             JAXUCZ010000001.1  173557530-173557726
            646-720             JAXUCZ010000001.1  173558691-173558765
            721-840             JAXUCZ010000001.1  173560311-173560430
            841-916             JAXUCZ010000001.1  173563597-173563672
            917-1042            JAXUCZ010000001.1  173564703-173564828
            1043-1222           JAXUCZ010000001.1  173566781-173566960
            1223-1450           JAXUCZ010000001.1  173569732-173569959
            1451-1599           JAXUCZ010000001.1  173572705-173572853
            1600-1761           JAXUCZ010000001.1  173575604-173575765
            1762-1908           JAXUCZ010000001.1  173577147-173577293
            1909-3038           JAXUCZ010000001.1  173578538-173579667
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..3038
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /note="zinc finger protein 143"
                     /db_xref="GeneID:361627"
                     /db_xref="RGD:1305662"
     exon            1..67
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            68..187
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1992
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /EC_number="2.7.10.2"
                     /note="zfp-143; selenocysteine tRNA gene
                     transcription-activating factor"
                     /codon_start=1
                     /product="zinc finger protein 143"
                     /protein_id="NP_001012169.2"
                     /db_xref="GeneID:361627"
                     /db_xref="RGD:1305662"
                     /translation="MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLEN
                     MEGVSLQAVTLADGSTAYIQHNSKDGRLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLR
                     LEDGQAVQLEDGTTAFIHHTSKDSYDQSSLQAVQLEDGTTAYIHHAVQVPQPDTILAI
                     QADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSEGVTSTGLIGENEQEKKMQIVL
                     QGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGK
                     AFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGC
                     GRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVP
                     GCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQ
                     EAFFEPPPGQGDDVLKGSQITYVTGVEGEDIVSTQVATVTQSGLSQQVTLISQDGTQH
                     VNISQADMQAIGNTITMVTQDGTPITVPTHDAVISSAGTHSVAMVTAEGTEGQQVAIV
                     AQDLAAFHAASSEMGHQPHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRI
                     ASRIQQGETPGLDD"
     exon            188..280
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            281..364
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            365..448
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            449..645
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            646..720
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            721..840
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            841..916
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1042
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..1222
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1450
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            1451..1599
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1761
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            1762..1908
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
     exon            1909..3038
                     /gene="Zfp143"
                     /gene_synonym="STAF; Znf143"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcggctgt ttcctgtcct ggtgcatggt ggtcggacga aggaattgtt ggaaaatttt
       61 ctcggagggt agaaaatgtt gttagcgcaa ataaatcggg attctcaggg aatgacagaa
      121 tttcctggag gaggaatgga ggctcagcat gtcactctgt gcctgacaga ggcggtaacc
      181 gtggcagatg gtgacaattt agaaaatatg gaaggtgtga gtttacaagc tgtcactctt
      241 gccgatggct ctactgctta catacagcat aattctaaag atgggagact cattgatggc
      301 caggtcattc aattggaaga tggttctgct gcctatgttc aacatgtccc catacctaaa
      361 agtacagggg acagtttgcg gctggaggat gggcaggcag tgcagctgga agacggaacc
      421 actgcgttta tccaccacac ttcgaaagat agttatgacc agagctccct tcaggccgtc
      481 cagttggaag acggtacaac agcgtatatc caccatgcag tgcaagtccc acagcctgac
      541 accatcttag caatccaggc tgatggcaca gtggcggggc tgcacacggg agatgccacg
      601 attgaccctg ataccattag tgctttggag cagtatgcag caaaggtgtc tattgatggt
      661 agtgaaggtg tgacaagtac aggactgatt ggagaaaatg agcaagagaa aaaaatgcag
      721 atcgtcttac aaggacatgc tacgagagta actcctaaat ctcaacagag tggagaaaag
      781 gcgtttcggt gtaaatatga tggatgtggg aaactgtata caacagctca ccatcttaag
      841 gtccatgagc gctcgcacac aggagaccgg ccttatcagt gtgagcattc aggctgtggg
      901 aaagcatttg caacaggtta tggactaaaa agtcatttca gaactcatac tggagaaaag
      961 ccatatcggt gttcagaaga taattgtact aaatctttca aaacttcagg agacctacag
     1021 aagcacatca gaacccatac aggagaaagg ccctttaaat gccctattga aggctgcggt
     1081 cggtccttta caacgtcaaa tatcagaaaa gtacacatta ggacacacac aggagaaaga
     1141 ccttactact gcacagaacc aggatgcggg agggcatttg ccagcgcaac taattataaa
     1201 aaccatgtga ggatacacac aggagaaaag ccatatgtct gtacagttcc tgggtgtgac
     1261 aaacggttta cagaatattc cagtttgtat aaacatcatg tcgttcacac tcactctaaa
     1321 ccatacaact gtaaccactg tgggaaaaca tacaaacaga tttccacact ggccatgcac
     1381 aaacggacag cccacaatga cacagagccc attgaggagg agcaggaagc cttcttcgag
     1441 cctcccccag gtcaaggtga tgatgttctt aaagggtccc agatcacata tgttacaggt
     1501 gtagaaggag aggacatcgt atctacacaa gtagccacag taacccagtc tgggttgagt
     1561 caacaagtca cactcatatc gcaggatggg actcaacacg tcaacatatc tcaagccgac
     1621 atgcaggcca ttggcaacac catcaccatg gtaacacagg atggcacacc catcacagtc
     1681 cccactcacg atgcagtcat ctcctcagca ggaacacatt ctgttgctat ggtcactgct
     1741 gagggcacag aaggacagca ggttgcaatt gtagctcaag acctggcagc attccatgcg
     1801 gcctcttcag aaatgggaca ccagccacat agccatcatt tagtaactac agaaaccaga
     1861 cctctgacct tagtggcaac atccaatggc acccagattg cagttcagct tggagagcag
     1921 ccatctctgg aagaagctat tagaatagca tctaggatcc agcaaggaga gacgccaggg
     1981 ttggatgatt aatactcaga accacagagc aataaagcag gaggaagagc ctttcatctc
     2041 tgcggcagaa ttcctgaagc ccggcccggc agagcagaag tcccattcct gaagcactgg
     2101 acacattttt atgcgagagt agagaacgtt ttcttcttga cacttttgtg tacatagtcc
     2161 ctggaataaa ttcccacggt gattcattgt gtacaaggaa gaatgaagtg agagccctgt
     2221 ggcagttctt catgtttctc ttggtcacac ggcagacttg tgaggccacc cgtaagacca
     2281 gcgaggtcct aacacagtca agatgagctt ttaacttact gtgaaaaaga aaaaggctgt
     2341 atctaatgtg ctgaaggttc tacatgtgaa acaatcataa ctccaaagcc atcacagaaa
     2401 ataaaggatg caagccttca gctgtccctc cagttaatgt ctggattttt ttgtcctact
     2461 acacacccat ttttatttgt atttcaaagt ttgaagactt catttatagt ctcccatccc
     2521 tgtaatataa catttcttca agctaaaatg ctgattattt tagcattaca ttggattatg
     2581 tataaaatta caaagtttgc ttattttaaa ttaaacatca aatccagtgt ttgaagctgg
     2641 gaatggtagc ttgtgcctgt aatcccagca ttaaagacct gaggcaggag gcatacataa
     2701 atttgagact ggcctggact atgttgtgaa tttcaggcta atctgagcta cagagtaaat
     2761 actttctcaa aaacaaagta tatctgttgt ttgggttgtt aaagattcta ttcagccttc
     2821 tgattttttg ctactgtttt ttatgataat caactatgag agtttcccac gggtctggcc
     2881 taggcttata gttctatggc tgagaatgga tttactccaa aaaaaaactg ggttagtgag
     2941 ttatgtaaat tatttatttt tgctcctaag cttttgtttt aaagcttatt taccttaaag
     3001 tttattattg actttgaata cagcagtttt taaaacaa
//
