LOCUS       NM_001024775            3014 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 110 (Zfp110), mRNA.
ACCESSION   NM_001024775 XM_218292
VERSION     NM_001024775.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3014)
  AUTHORS   Valle-Garcia,D., Qadeer,Z.A., McHugh,D.S., Ghiraldini,F.G.,
            Chowdhury,A.H., Hasson,D., Dyer,M.A., Recillas-Targa,F. and
            Bernstein,E.
  TITLE     ATRX binds to atypical chromatin domains at the 3' exons of zinc
            finger genes to preserve H3K9me3 enrichment
  JOURNAL   Epigenetics 11 (6), 398-414 (2016)
   PUBMED   27029610
REFERENCE   2  (bases 1 to 3014)
  AUTHORS   Frietze,S., O'Geen,H., Blahnik,K.R., Jin,V.X. and Farnham,P.J.
  TITLE     ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends
            of ZNF genes
  JOURNAL   PLoS One 5 (12), e15082 (2010)
   PUBMED   21170338
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3014)
  AUTHORS   Geetha,T., Kenchappa,R.S., Wooten,M.W. and Carter,B.D.
  TITLE     TRAF6-mediated ubiquitination regulates nuclear translocation of
            NRIF, the p75 receptor interactor
  JOURNAL   EMBO J 24 (22), 3859-3868 (2005)
   PUBMED   16252010
REFERENCE   4  (bases 1 to 3014)
  AUTHORS   Linggi,M.S., Burke,T.L., Williams,B.B., Harrington,A., Kraemer,R.,
            Hempstead,B.L., Yoon,S.O. and Carter,B.D.
  TITLE     Neurotrophin receptor interacting factor (NRIF) is an essential
            mediator of apoptotic signaling by the p75 neurotrophin receptor
  JOURNAL   J Biol Chem 280 (14), 13801-13808 (2005)
   PUBMED   15668238
REFERENCE   5  (bases 1 to 3014)
  AUTHORS   Benzel,I., Barde,Y.A. and Casademunt,E.
  TITLE     Strain-specific complementation between NRIF1 and NRIF2, two zinc
            finger proteins sharing structural and biochemical properties
  JOURNAL   Gene 281 (1-2), 19-30 (2001)
   PUBMED   11750124
REFERENCE   6  (bases 1 to 3014)
  AUTHORS   Casademunt,E., Carter,B.D., Benzel,I., Frade,J.M., Dechant,G. and
            Barde,Y.A.
  TITLE     The zinc finger protein NRIF interacts with the neurotrophin
            receptor p75(NTR) and participates in programmed cell death
  JOURNAL   EMBO J 18 (21), 6050-6061 (1999)
   PUBMED   10545116
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097420.1.
            
            On Jun 10, 2005 this sequence version replaced XM_218292.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097420.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3014
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /note="zinc finger protein 110"
                     /db_xref="GeneID:308362"
                     /db_xref="RGD:1306339"
     exon            1..149
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
     exon            150..229
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
     CDS             197..2665
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /note="zinc finger protein 274"
                     /codon_start=1
                     /product="neurotrophin receptor-interacting factor 1"
                     /protein_id="NP_001019946.1"
                     /db_xref="GeneID:308362"
                     /db_xref="RGD:1306339"
                     /translation="MASTLPTTWPHESVKFEDVSLTFTKEEWAQLDLQQKCLYREIMM
                     ENYNNMISVEHHFSKPNVISQLEEAEDCWPMEREIRQDILPECSGPSLDPGMNSFPAE
                     SPLMKIKVVEVLTLNKDVAGPRNALIQSLYPESRENLNPGNLKPAKPSKRLTDTEALR
                     QKFRHFQYEESAGPQKAVSRLRKLCHQWLQPNIRSKKQIIELLVFEQFLSALPEKFRV
                     WLESQHPEDCRAAVALLENMTSVTKDDAQLVCSSEATDQLKEKRKDVATLPVTVPPEE
                     PVTFQDVAVGFSQEEWRLLGPVQRTEYHDVMLETLGNLVSVGWEPTLENRAISPDSPI
                     PVVKPIHDPNPKDLSRNGIQSTVFEIISQDRVQEIHTIESNQAGLLQEKSHPQKKLSE
                     SSKSQEGTNLHKSQGSLDEVPPRKHVKVKQKGTRKGKDRKNTISMTRGLRIRNQQKDS
                     VEWQGRGDSNPMTHGYSIKNQRGSEQGTAGARRDPITLTVSAQFYQKATGSEEGRFRD
                     NSNAIVPDTPTKIHQKSPEWHKVGRSNNSMSSVQNDQMGSGAGRGRDNTILTHALPVK
                     IHQKGYEEGKVQGNRNSLRHVKAHQKGSKGERVRELSTSEKHVPYIKNHLKTSEREKG
                     RENNDSIKYGPYIKTCYRGSEVRKLRRANNCTKAISRHAQQIFFIKIHKGSQVCRCSE
                     CGKMFRNSRYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECG
                     RTFNDRSAISQHLRTHTGAKPYHCQHCGKAFRQSSHLTRHERTHTGERPYVCSNCGKA
                     FTQSSHLIGHQKTHRIKFKKQPKL"
     exon            230..356
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
     exon            357..452
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
     exon            453..932
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
     exon            933..1021
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1148
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
     exon            1149..2985
                     /gene="Zfp110"
                     /gene_synonym="Nrif1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgacgggcga gcgccattgt gtctttcgca gtcacttgta acgcttcgtg agagtccgtc
       61 ggacagcacc catcttatgt tttattcgta acttctggag cctagtgtcg gctttgttag
      121 tgactccact tctacggacc cgggagaagt ttcgtcagca ttctgcctac tcgcgcgaga
      181 gaacattgag gacagtatgg cttccacgct tccaacaacc tggccccatg aatctgtgaa
      241 gtttgaagat gtatcactga catttaccaa ggaagagtgg gcacagctgg acctccaaca
      301 gaagtgccta tacagggaaa tcatgatgga gaactacaat aacatgattt cagtggagca
      361 tcacttttcc aagccaaatg tcatatctca gttagaagaa gcagaagact gctggccaat
      421 ggagagagaa attcgtcaag atattcttcc agaatgttct gggccttctc tggaccctgg
      481 aatgaattcc tttcctgctg agagtcccct gatgaagatc aaggttgttg aggtccttac
      541 attgaacaag gatgtggctg gtccccggaa tgccctgatt caatccctat atccagaaag
      601 tagggaaaac ttgaacccag gtaacctcaa accagctaag ccaagcaagc gtttgactga
      661 cactgaagct ttgcgccaga agttccgaca tttccagtat gaagaatcag ctggtcccca
      721 gaaggctgtg tcccggcttc gtaagctgtg tcaccagtgg ctgcagccca atatacgttc
      781 aaagaagcag atcatagagt tgctggtgtt tgaacagttc ctgagtgcac tgcctgagaa
      841 gtttcgggtg tggttagagt cacagcaccc agaggactgc agagcagcag tagctttgtt
      901 ggagaatatg acctcagtga ctaaggatga tgctcagctt gtctgctcta gtgaagccac
      961 tgatcaacta aaggagaaaa gaaaggatgt ggctacctta ccagttactg taccacctga
     1021 ggagccggtg actttccagg atgtggctgt gggcttcagt caggaggagt ggcggctact
     1081 aggtccagtg cagaggacgg agtatcatga tgtgatgcta gagaccttgg gcaacttggt
     1141 ctctgtgggg tgggagccta cgttggaaaa cagagcgata agtccagact ctcccattcc
     1201 tgtggtaaaa ccaattcatg atccaaaccc aaaagatctc tcaaggaatg gtatccaatc
     1261 cactgtcttt gaaattatct cacaagatag ggtccaagaa atacacacca tagaatcaaa
     1321 tcaagcgggt cttctacagg aaaaaagcca tcctcagaag aagctctctg aaagctccaa
     1381 gtctcaggag ggaactaatc ttcacaaaag ccagggctca cttgatgaag ttcctcctag
     1441 aaagcatgta aaagttaagc agaaggggac tagaaagggg aaagacagga agaacaccat
     1501 ttccatgaca cgaggtttac gcataagaaa tcagcaaaag gactctgtgg agtggcaagg
     1561 caggggtgac agcaatccca tgacacatgg ctactctata aaaaaccaac ggggttctga
     1621 gcaaggaaca gctggggcca gaagagatcc cattacactt actgtgtctg cacaatttta
     1681 ccagaaagcc actggctctg aagagggtag attcagggac aatagcaatg ccatagtacc
     1741 tgatacacct acaaagattc accagaaaag ccctgaatgg cataaagtgg ggagaagtaa
     1801 caattccatg tcatctgtac aaaatgacca gatggggtct ggggcaggaa gaggcaggga
     1861 caatactatc ttgacacatg cactacctgt aaaaattcac cagaaaggct atgaagaagg
     1921 taaagttcaa ggaaacagga attccttgag acatgtaaaa gctcaccaga agggctctaa
     1981 aggggaaaga gtcagggaac ttagcacttc tgaaaaacat gttccctata taaaaaatca
     2041 cctaaagacc tctgaaagag aaaaaggcag ggaaaacaat gattccataa aatacggtcc
     2101 ctatataaaa acttgctata ggggttctga agtgagaaag ctcaggagag ccaataattg
     2161 tacgaaggcc atcagccggc atgctcagca gatattcttt ataaaaattc acaaggggag
     2221 ccaagtttgc cgatgcagtg aatgtggtaa aatgttccga aattctaggt atttctctgt
     2281 ccataagaag atccacacag gagaacggcc ttacatgtgt atggcctgtg ggaaagcctt
     2341 tgttcagagc tcttccctca cacagcatct tagaattcat agtggagaga gaccatttga
     2401 gtgttcagag tgtgggagga ctttcaatga ccgctcagcc atctctcaac acctgaggac
     2461 tcacactgga gctaagccct accactgtca gcactgtggg aaagctttcc gtcagagttc
     2521 ccaccttacc aggcatgaga ggactcatac tggggagcga ccatatgtgt gcagcaactg
     2581 tgggaaggca ttcacacaga gctcacacct tattgggcat cagaaaacac acaggataaa
     2641 attcaagaag caacccaaat tgtagccttt gtgcctttca aagcactagt ttttcagcct
     2701 tgagatgtac tatgcagaca ccgagtgtga taaataggct ttgaataagg aaagccccac
     2761 agcttaaggg cagctcagga caccacccag caggcagtga gtgaaaccat cagggagttt
     2821 tttaattgct tcacttatcc tcagaaggaa ataaaagatc tgaaaatacc cctaagttta
     2881 agaagccaag taccaaaatt tgcaccaata tttctataca gggtaaagtg tgtgagtgac
     2941 aaaaattaaa agtatgtaga aaaataaact tatatttatg tggaaaaaaa aaaaaaaaaa
     3001 aaaaaaaaaa aaaa
//
