LOCUS       XM_017590009            2650 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 108 (Zfp108),
            transcript variant X1, mRNA.
ACCESSION   XM_017590009
VERSION     XM_017590009.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017590009.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017590009.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2650
                     /gene="Zfp108"
                     /note="zinc finger protein 108; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 121 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 48 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102548503"
                     /db_xref="RGD:1564214"
     CDS             335..2374
                     /gene="Zfp108"
                     /codon_start=1
                     /product="zinc finger protein 235 isoform X1"
                     /protein_id="XP_017445498.2"
                     /db_xref="GeneID:102548503"
                     /db_xref="RGD:1564214"
                     /translation="MTKLQEAVTFRDVAVVFSKEEMGLLDAAQRKLYHDVMVENLRNL
                     LAVVLSGGQSPSTMKTVDTPGVRCLSLGKLPCWHMTGHDANNLARAPEDVINTQEQGS
                     HFLERIHSPCRGGAEEPSQVPEDDDSVKSLASNHSSISENQEFLSGRAQSSLSETHLS
                     ERRDRGKHCPQTPVKTKPQPLALGVDILSFISHQDNDTLHERDKVHSSSDCDEVICPM
                     SHLTQDCDYTERKAYQCSQGQEAFNDSPSLELHQQTPLGKKSSVLSTHKDSRRSSSVP
                     IQQSIHPGEKRYWCQECGKGFSHSSTLQTHQRVHTGEKPYCCDSCGKAFSRSSDLNIH
                     RRVHTGERPYKCEVCGKGFTQWAHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQR
                     VHTEEKPYKCDECGKRFSLSGNLDIHQRVHTGEKPYKCEECGKGFSSASSFRGHQRVH
                     TGEKPFHCSVCGKTFSRSSHFLDHQRIHTGEKPYRCDVCGKRFPWSLSLHSHQRVHTG
                     EKPYKCEECGKGFSHASSLQAHQSVHTGEKPFKCNVCQKQFSKASNLQAHQRVHTGEK
                     PYKCDTCGKAFSQRSSLQVHQRIHTGEKPFKCEECGKGFSWSAGLTAHQRVHTGEKPY
                     TCQQCGKGFSQASYFHTHQRVHTGEKPYMCQQCGKRFSQASHFHTHQRVHTGQRP"
ORIGIN      
        1 cccggggtgc gaagcgacat gtgagtgctt cctgtgaggt gaaaacctgg agagtcttct
       61 ggctcttcct gtgcgcctgt gctcctgatg tatcctctca gtgaccgcgt ctgcagcccg
      121 aggagaagtg aggcattcaa gtcctctcta gctgggctct gcctgaggcg aggctgccct
      181 acactgaccc acctcagcag cttgcagagg tcccaggaga gtctagtttc tctggggagc
      241 cttgagaagg agctgtgatg agagatggtc agtgtcctga atcgttaagt gcttgcttcc
      301 cagagccctg ccttgtctca aagagaagag aacgatgacc aagttacagg aggcagtgac
      361 gttcagggat gtggccgtgg tcttcagtaa ggaggagatg gggttgctgg acgctgccca
      421 gaggaagctg taccacgatg tgatggtgga gaacctcagg aacctcctgg cagtggttct
      481 ttcaggaggc cagagtccaa gtacaatgaa gacagtcgac acgccaggag taaggtgcct
      541 ttcactgggg aagcttccat gttggcacat gacaggccat gatgccaaca acctggccag
      601 agctccagaa gatgtaataa acactcaaga acagggttct cacttcctgg agcgaatcca
      661 ctcgccctgc cgtgggggag cagaagagcc ttctcaggtc cctgaggatg atgactctgt
      721 taagagtctc gcaagcaacc attccagcat tagtgaaaat caggaatttc tgtctgggag
      781 agctcagagt tctttgagtg aaacacatct cagtgagaga cgtgaccgtg ggaaacactg
      841 tcctcagact ccggtgaaaa ccaagccaca gccgttggct ctgggtgttg acattctgag
      901 tttcatttcc catcaagata acgatacact gcatgaaaga gacaaagtcc acagcagcag
      961 tgactgtgac gaagtcatct gtcccatgtc acacctcacc caggattgtg attacacaga
     1021 acggaaggcc taccagtgca gccagggcca agaagccttc aatgacagcc ctagtctgga
     1081 actccatcaa cagaccccct taggaaagaa atcttctgtc cttagtactc acaaggacag
     1141 caggcgtagc tccagtgtcc ccattcaaca aagcattcat ccaggggaaa aacgctactg
     1201 gtgtcaagag tgtggcaaag gtttcagtca cagctcaact ctacagactc accagagagt
     1261 gcacacggga gagaagccct actgctgcga cagctgcggg aaggccttca gccgcagctc
     1321 ggatctcaac atccaccgcc gcgtgcacac cggggagaga ccttacaagt gtgaggtgtg
     1381 tgggaagggc ttcacgcagt gggcacacct ccaggcccac gagagaattc acacaggaga
     1441 gaagccatac aagtgtggag actgtggcaa acgcttcagc tgtagctcga accttcacac
     1501 ccaccagaga gtccacactg aggagaaacc gtacaagtgt gacgagtgtg ggaagcgctt
     1561 cagcttaagt ggcaacctag acatccatca gcgggtccac acgggagaga aaccgtataa
     1621 atgtgaagag tgcgggaagg gtttcagttc agcctcaagc ttccgaggcc accagagggt
     1681 ccatacagga gagaagccgt ttcactgcag tgtgtgtggg aagaccttca gtcggagctc
     1741 acattttcta gatcaccaaa gaattcacac tggggagaaa ccatacaggt gtgatgtgtg
     1801 tgggaagcgc ttcccctgga gcttgagcct acacagtcac cagagagtcc acacaggaga
     1861 gaaaccgtat aaatgtgagg agtgtgggaa aggcttcagt catgcctcga gtctgcaggc
     1921 tcatcagagt gtccacaccg gcgagaagcc gttcaaatgc aatgtttgcc agaagcagtt
     1981 cagcaaggcc tccaacctcc aggcccacca gagagtgcac acaggggaga agccctacaa
     2041 atgcgacacg tgtgggaagg ccttcagcca gaggtccagt ctccaagttc atcagagaat
     2101 tcacactggg gagaagccgt tcaagtgtga ggagtgtggg aagggattca gctggagtgc
     2161 ggggcttact gctcaccaga gggtccacac gggagagaaa ccctacacgt gtcagcagtg
     2221 tgggaagggc ttcagtcagg cctcctattt ccacacgcac cagagggtcc acacgggaga
     2281 gaaaccctac atgtgtcagc agtgtgggaa gcgcttcagt caggcctcac atttccacac
     2341 gcaccagagg gtccacaccg gacagagacc ctaaagctgc agcatctgct gtaagagctt
     2401 cagtcacatc ttgtcttcca ccatagggtc cacagtgcag ggaatcttta gtttctgccg
     2461 tcaggtggac tctatgctgc tgatggttaa aagcccccac acagacttca ggagactcca
     2521 taggggcttc atttgggcta ttttgccccc aacttattat cctactgtac tcattatgca
     2581 aagggaagat agtgttttag aaaggatctt cttagcgtac gaataaagaa aagaatcaaa
     2641 aaacgtatat
//
