LOCUS       XM_039080126            6193 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger, C3H1-type containing
            (Zfc3h1), transcript variant X1, mRNA.
ACCESSION   XM_039080126
VERSION     XM_039080126.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080126.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6193
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6193
                     /gene="Zfc3h1"
                     /note="zinc finger, C3H1-type containing; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     146 samples with support for all annotated introns"
                     /db_xref="GeneID:314836"
                     /db_xref="RGD:1306287"
     CDS             69..6059
                     /gene="Zfc3h1"
                     /codon_start=1
                     /product="zinc finger C3H1 domain-containing protein
                     isoform X1"
                     /protein_id="XP_038936054.1"
                     /db_xref="GeneID:314836"
                     /db_xref="RGD:1306287"
                     /translation="MATADTSTPASSGLSPKEEGELEDGEISDDDNNSQIRSRSSSTS
                     SSGGGLLPYPRRRPPHPTRGGGSGGGGGSSSSSSSSQQQLRNFSRSRHPSERGHLRGH
                     SSYRPKEPFRTHPPPVRMSSGSLSESSPRPSFWERSHIALDRFRFRGRPYRGGSRWSR
                     GRGVGERGGKPGCRPPLGGGGGGGGAGSGFGSSQSWREPSPPRKSSKSFGRSPSRKQN
                     HSSKSENCGEETFEDLLLKYKQIQLELECINKDEKLALSSKEETVQEDPKTLHLEDQA
                     GTNNANVTKDPSKEGAPEEKTQLKTFQAFELKPLRQKLTLPGDKNRVKRGKDGAKQLP
                     LKSSTTDASQGLEDKEQNITRRISASDILSEKKLGEEEEELSELQLRLLALQSASKKW
                     QQKEQQVMKESKEKLTKTKTTQQKAKASTKAHSTKKVSTTAKQALRKQQTKAWKKLQQ
                     QKEQERQKEEDQRKHAEEEERRKREEEIRKIRDLSNQEEQYNRFMKLVGGKRRSRSKS
                     SDPDLRRSLEKQPESGGGIYQYDNYEEVAMDTDSETSSPAPSPVQPPFFPECSLGYFS
                     SAPSVSLPPPAQVSSVPSLSQPFGEGLCASLDPLPPLPPLPPLPPEDPEQPPKPPFAD
                     EEEEEEMLLREELLKSLANKRAFKPEEASSNSDPPSPPVLNNSQPLSRSNLSIVSINT
                     VSQPRIQNPKFHRGPRLPRTVISLPKHKSVVVTLNDSDDSESDGEASKSTSSVFGGLE
                     SMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEEKKIEYRLLKEEIANREKQRL
                     IKSDQLKTSSSSPANSDVEMDGIGRIAMVTKQVADAEAKLKKHKILLIKDESVLKNLV
                     LQEAKKKESVRNAEAKITKLTEQLQAAEKILSVNRMFLKKLQEQIHRVQQRVTIKKAL
                     TLKYGEELARAKAVASKELGKRKLEQDRLGPNKMMRLDNSPVSSPRKHSAELIAMEKR
                     RLQKLEYEYALKIQKLKEARALKAKEQQNLVPVVEEEPEFSLPQPSLHDLTQDKLTLD
                     TEENDADDEVLSGSNRERRRSFLESNSFTKPNLKHTDTPNKECVNKLSKSTVEKPELF
                     LGLKIGELQKLYSKADSLKQLILKTTTGITENILHGQEISVDVDFVTAQSKTTEVKPC
                     PFRPYQSPLLVFKSYRFSPYYRTKEKLPLSSVSYSNMIEPDQCFCRFDLAGTCNDDDC
                     QWQHVQDYTLSRKQLFQDILSYNLSLIGCSETSTDEEIASATEKYVEKLFGVNKDRMS
                     MDQMAVLLVSNVNESKGHTPPFTTYKDKRKWKPKFCRKPASENSCSSDDEQSTGPIKY
                     AFRPENQINVPALDTVVTPDDVRYFTSETDDIANLEASVLENPSHVQLWLKLAYKYLN
                     QNEGLCSESLDSALNVLARALENNKDNPEIWCHYLRLFSKRGTKEEVQEMCETAVEYA
                     PDYQSFCTFLHLESTFEEKDYVCERMVEFLMGAAKRETSDILSFQLLEALLFRVQLHI
                     FTGRCQSALAILQNALKLANDAIVAEYLRTEDRCLAWLAYIHLIEFNSLPSKLYDPSN
                     ANPSRIVNTEPFVMPWQAAQDVKTNPDLLLAVFEDAVKACTDEALTSGERTEVCLPLY
                     TNMMALHQLLERDEEAVELCKSLLESCPTNCQLLETLAALYLKTDCYDKARWVWLTAF
                     ENNPQNAEIFYHLCKFFILQNGGDKLLPLLRQFIGSFFKPGFEKYSNVDLFRYLLNIP
                     GPLDIPACLCKGNFDDDVFNNQVPYLWLIYCLCHPLQSSIKETIEAYEAALGVAMRSD
                     IVQKIWMDYLVFANNRAAGSRNKVQEFKFFTDLVNRCLVTVPARYPIPFSSADYWSNY
                     EFHNRVIFFYLSCVPKTQHSKTLERFCSVMPANSRLALRLLQHEWEESNVQILKLQAK
                     MFTYNLPTCLATWKIAIAAEIALKGQREVHRLYQRALQKLPLCASLWKDVMLFIFYFI
                     LTFSYKFSACAISIDVVNAQNIAVSYFYASLSFTATLV"
ORIGIN      
        1 gggaaggcag ctgtcgggcg gtccccggac agagggctta aggtagtgtg gacagcgctg
       61 ctccccggat ggcgaccgcc gacacttcga ccccggcctc tagcggcctc tcaccgaaag
      121 aagaagggga gctcgaagat ggggagatca gcgacgacga taacaacagc caaatccgga
      181 gccggagcag cagcaccagc agcagcggcg gcgggctgtt accgtatccg cggcggaggc
      241 ctcctcaccc gacccggggc ggcggatctg ggggaggcgg cggctcctcg tcgtcctcgt
      301 cctcttctca gcagcagctg aggaatttct cacgctcgcg gcacccgtct gagcggggcc
      361 acctcagggg acacagcagc taccgaccca aagaaccgtt ccggactcat ccgcccccgg
      421 ttcggatgtc ttcggggtcc ctgtcggaaa gcagcccccg accgtcgttc tgggagcgga
      481 gccacatagc tttggaccgt ttccgctttc gaggcaggcc ttaccggggt gggagtcgct
      541 ggagtcgggg gcgaggagtg ggtgagcgag gaggcaagcc ggggtgcaga cctcctttag
      601 gaggaggagg aggaggagga ggagcgggat ccggattcgg cagcagccag agctggcgag
      661 aaccctctcc acctcgcaag agctccaaaa gttttggaag atctccgtca agaaaacaga
      721 accattcatc caaaagtgag aactgtgggg aagaaacttt tgaagatttg cttttaaagt
      781 ataagcaaat acaactggaa ctagagtgca tcaataagga tgaaaagcta gctctgagca
      841 gcaaagaaga gactgtgcag gaagatccga aaacattgca tcttgaggac caagcaggca
      901 ccaacaatgc gaatgtcaca aaagacccca gtaaggaagg ggctcctgag gagaagactc
      961 agctcaaaac ctttcaggca tttgaattga aaccactcag gcaaaaactg actttaccag
     1021 gggataagaa ccgggtaaaa agagggaaag atggagcaaa gcagctcccc ttgaagtcca
     1081 gcactacgga cgccagccaa ggattagaag ataaagagca aaatataaca agaagaatta
     1141 gtgcctcaga tattctatct gaaaagaaac ttggtgaaga agaggaggaa ctgtctgagc
     1201 ttcagcttcg ccttttggct ctgcagtcag ctagtaagaa atggcagcag aaggagcaac
     1261 aggtgatgaa ggagagcaaa gaaaagctga ccaagaccaa aaccacgcag caaaaggcaa
     1321 aagccagcac aaaagcacac tcgaccaaga aagtgagcac cacagctaaa caagcattac
     1381 ggaagcagca gacaaaggca tggaagaaac tccagcagca aaaagagcag gagagacaga
     1441 aagaagagga ccagcggaaa catgctgagg aagaagagag gaggaaaaga gaagaagaaa
     1501 tcagaaaaat cagagacctt tcaaatcagg aagaacagta caatcgattc atgaaattgg
     1561 ttggtgggaa gaggagatca agaagtaaat cttcagaccc tgacctgagg cggtccttag
     1621 aaaagcagcc tgagagtgga ggaggcatct atcaatatga taactatgag gaagttgcta
     1681 tggatactga cagtgagacc agttctccag ctccttcacc agtacaacca ccgtttttcc
     1741 ctgagtgttc actggggtat ttttcttcag caccatctgt ttctttgcct ccaccagctc
     1801 aggtctcatc tgtgccgtct ctgagccagc cgtttgggga aggcctgtgt gcttctctcg
     1861 accctctacc tcctcttccg cctttgccac ctctaccacc tgaagatcca gagcagcctc
     1921 caaagccccc gtttgctgat gaagaagagg aggaagaaat gctccttcga gaagaactac
     1981 ttaaatctct agcaaataaa agagctttta agccagagga ggcatccagt aatagcgacc
     2041 caccttcacc tccagttctg aacaattctc agcctttgtc aagaagcaat ctatcaatag
     2101 tcagtattaa tacagtatct cagcctagga tacagaatcc aaagtttcac agaggaccac
     2161 gtcttccacg aactgtgatc tcgcttccaa aacataaatc agtggttgta accctgaatg
     2221 attcagatga tagtgagtct gatggagaag cttccaagtc aaccagtagt gtctttggtg
     2281 gcttagagtc catgatcaaa gaagcaagac gaactgcaga gcaagcttca aaacccaaag
     2341 tacctccaaa atctgaaaaa gaaaatgacc ccctgcgaac acctgaagct ttgcctgaag
     2401 aaaagaagat tgagtataga ttgttaaagg aagagattgc taatcgtgag aaacaacgtt
     2461 tgatcaaatc agatcaactg aagacaagtt catcgtcccc agcaaactca gatgtggaaa
     2521 tggatgggat tggtagaatt gcaatggtta ctaagcaagt tgcagatgca gaagcaaagc
     2581 ttaaaaaaca caagattctc ttgattaaag atgaatcagt tttaaaaaat ctagtattgc
     2641 aagaagccaa gaagaaagag tctgttcgaa atgctgaagc aaaaattaca aaacttacag
     2701 aacaacttca ggcagcagag aaaatcctca gtgttaacag gatgtttttg aagaagctcc
     2761 aagaacaaat tcatagagtt caacagcgtg ttaccattaa gaaagctttg actctgaagt
     2821 atggagaaga gcttgctcgg gccaaggcgg tggctagtaa agaactaggg aaacgcaaac
     2881 tggagcaaga tcgccttgga ccaaacaaaa tgatgagact ggataattct ccagtatcaa
     2941 gtccaaggaa gcattcagca gagttaattg ctatggaaaa aagacgatta caaaagctag
     3001 aatatgaata tgccttgaaa attcaaaagt taaaagaagc cagagccctc aaagcaaagg
     3061 aacaacaaaa ccttgttccc gttgtggaag aggaacctga gttttcttta cctcaaccct
     3121 cccttcatga tctgacacag gataaattaa ccttggacac agaagaaaat gatgctgatg
     3181 atgaagtttt gtcaggttcg aacagagaac gaagaagatc attcctggag tccaattctt
     3241 tcactaaacc caaccttaag cacactgaca cacctaacaa agagtgtgta aacaaactca
     3301 gtaagagtac tgtagaaaag ccagaacttt ttctagggtt aaaaataggg gaattacaaa
     3361 aattatattc aaaagctgac agcttaaaac agttgatttt aaaaactacc acaggtatta
     3421 cagaaaacat tttgcatggt caggagatct ctgtggatgt ggattttgtt acagcacaga
     3481 gtaaaacaac agaagtgaag ccatgtccat ttagacctta ccagagccct cttctagtct
     3541 ttaaatccta cagatttagt ccttactacc gaaccaagga aaaacttccc ctaagttcag
     3601 tgtcgtacag caatatgatt gagccagatc agtgtttctg ccgttttgac ttagcaggga
     3661 catgtaatga tgatgattgt cagtggcagc atgtacaaga ctatacactt agccggaaac
     3721 agttgttcca ggacattctg tcatataatc tatccttgat tggctgttca gagaccagca
     3781 ctgatgagga aattgcttct gcaacagaaa aatatgttga aaaacttttt ggagtaaaca
     3841 aagaccgaat gtcaatggac cagatggctg ttctccttgt tagcaatgtt aatgaaagta
     3901 aaggtcatac acctccattt acgacttaca aagataaaag aaaatggaag cccaagtttt
     3961 gtagaaaacc tgcatcagag aatagctgca gtagtgacga tgagcagtct acaggaccaa
     4021 ttaagtatgc cttccgacca gagaaccaaa taaatgttcc agctctggac actgttgtca
     4081 ctccagatga tgttaggtat tttaccagtg aaactgatga cattgctaac ttagaagcaa
     4141 gtgtactcga aaatccatca catgtacagc tttggctcaa gcttgcatac aagtacttga
     4201 atcaaaatga gggattgtgc tcagaatctt tggattctgc tttaaatgta ctggctcgag
     4261 ctttggaaaa caataaagac aatccagaaa tttggtgtca ttacctcaga ttgttctcaa
     4321 aaagagggac caaggaggag gtgcaggaaa tgtgtgaaac ggctgttgag tatgctcctg
     4381 actatcaaag cttttgtact tttttgcacc tagaaagcac ctttgaagaa aaggattacg
     4441 tgtgtgagag gatggtagag tttctgatgg gagcagccaa acgggaaaca tcagatattc
     4501 tgtcctttca gctgttagag gctcttttgt ttagagttca gctacatata ttcactggga
     4561 gatgccaaag cgcacttgcg attttacaga atgcattaaa attggctaat gatgcaatag
     4621 tagctgaata ccttaggaca gaagatcggt gtctggcgtg gctggcctac atacatctta
     4681 ttgagttcaa tagtctccct tcaaaacttt atgatccatc taatgctaat ccttcaagga
     4741 ttgttaacac agaaccattt gtaatgccat ggcaagcagc tcaagatgtc aagactaacc
     4801 cagacttatt actagcagtg tttgaggatg ccgtgaaagc gtgtacagac gaggccctta
     4861 ccagtggaga aagaacagag gtctgccttc cactttacac aaacatgatg gctctacacc
     4921 agctcctgga gagggatgag gaggcagtgg agctttgtaa aagcttactg gagtcctgtc
     4981 ccacaaactg ccagttattg gaaaccctcg cagctttgta tttgaaaaca gattgttatg
     5041 acaaagcccg atgggtttgg cttactgcat ttgaaaataa tcctcagaat gcggaaattt
     5101 tttatcatct ctgcaaattt ttcatcttgc agaacggagg tgataagctt cttccacttt
     5161 tgagacaatt tattggatcc ttctttaaac ctggctttga gaagtatagt aatgtggatt
     5221 tatttcggta tctcttaaat atcccaggac cacttgacat tccagcgtgc ttatgtaaag
     5281 gaaattttga tgatgatgta tttaacaacc aagtccctta tttatggctg atttactgcc
     5341 tttgtcatcc tcttcagtca agtattaaag agacaataga agcatatgaa gcagcattag
     5401 gggtggccat gaggtctgat atcgtgcaga agatttggat ggattatctt gtctttgcca
     5461 ataatagagc tgctggatcc agaaataaag tccaagaatt caaatttttt actgacttag
     5521 tgaatagatg tttggttacg gtccctgccc gataccccat cccttttagc agtgctgatt
     5581 actggtccaa ctatgaattt cataatcggg tcattttctt ttatttgagc tgtgttccaa
     5641 agactcagca ctccaaaacc ctggaacggt tctgctctgt tatgccagca aactctcgac
     5701 ttgcactgag gctacttcaa cacgaatggg aagaaagcaa tgttcagatt ctgaaactcc
     5761 aagccaagat gtttacatat aatttaccaa catgcctggc cacctggaaa atagccattg
     5821 ctgctgagat tgctctaaag ggacaaagag aggtccaccg tttatatcag agagccttac
     5881 agaagttacc tctttgtgca tcactatgga aagatgtaat gctttttatc ttttatttta
     5941 tcttgacgtt ttcctataaa ttttctgcat gtgccatatc cattgatgtg gtaaatgctc
     6001 aaaacatagc tgtctcttac ttctatgctt ccctgtcttt tacagcaact cttgtttgaa
     6061 gcatcagaag gaggtaaaac tgataacctg agaaaactag tttccaagtg ccaagagatt
     6121 ggagtcagcc taaatgagct cttaaattta aacagtaaca aaacagaaag caagaatctc
     6181 tgaacactgg gtg
//
