LOCUS       NM_001399066            4855 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus zinc finger AN1-type containing 1 (Zfand1), mRNA.
ACCESSION   NM_001399066 XM_342213
VERSION     NM_001399066.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4855)
  AUTHORS   Turakhiya,A., Meyer,S.R., Marincola,G., Bohm,S., Vanselow,J.T.,
            Schlosser,A., Hofmann,K. and Buchberger,A.
  TITLE     ZFAND1 Recruits p97 and the 26S Proteasome to Promote the Clearance
            of Arsenite-Induced Stress Granules
  JOURNAL   Mol Cell 70 (5), 906-919 (2018)
   PUBMED   29804830
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Dec 30, 2021 this sequence version replaced XM_342213.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.9175.1,
                                           SRR26643295.8485.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                JAXUCZ010000002.1  93351918-93351997
            81-123              JAXUCZ010000002.1  93354481-93354523
            124-163             JAXUCZ010000002.1  93355221-93355260
            164-291             JAXUCZ010000002.1  93356407-93356534
            292-383             JAXUCZ010000002.1  93356683-93356774
            384-505             JAXUCZ010000002.1  93357831-93357952
            506-661             JAXUCZ010000002.1  93360518-93360673
            662-4855            JAXUCZ010000002.1  93360766-93364959
FEATURES             Location/Qualifiers
     source          1..4855
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q23"
     gene            1..4855
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /note="zinc finger AN1-type containing 1"
                     /db_xref="GeneID:361917"
                     /db_xref="RGD:1309519"
     exon            1..80
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..832
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /EC_number="3.1.3.25"
                     /note="zinc finger, AN1-type domain 1"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 1"
                     /protein_id="NP_001385995.1"
                     /db_xref="GeneID:361917"
                     /db_xref="RGD:1309519"
                     /translation="MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGC
                     PEANVIKERLKTDEHKSYPCSFKGCAEVELVAVICPYCEKNFCLRHRHQSDHECEKLE
                     IPKPRMAATQKLVRDIVDAKAGGAASKGRKGAKSSRTAAKVALMKLKMHADGDKSLPQ
                     TERTYFQVYLPKGSQEKSKAMFFCLRWSIGKVVDVAASLAGLRNENNKLTAKKLRLCH
                     VPSGEALPLDHTLERWITKEECPLYNGGNVILEYLNEEEQFVKDVDSYLE"
     exon            81..123
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
     exon            124..163
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
     exon            164..291
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
     exon            292..383
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
     exon            384..505
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
     exon            506..661
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
     exon            662..4855
                     /gene="Zfand1"
                     /gene_synonym="RGD1309519"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccctgccct tgcggcggtg gaaagatggc ggaattggac attgggcagc actgccaggt
       61 gcagcactgc cggcagcgag atttccttcc atttgtatgt gatggttgtt caggaatatt
      121 ttgcctcgaa cacaggagca aggactctca tggttgccct gaggcgaatg tgatcaagga
      181 gagactgaag acagatgaac acaaatctta cccatgctcc ttcaagggct gtgctgaagt
      241 agagcttgtg gcagtgatct gtccttactg tgagaagaac ttctgcctaa gacaccgtca
      301 tcagtcggat catgagtgcg aaaagctgga gatcccaaaa cctcgaatgg ctgccacaca
      361 gaaacttgtc agagacattg ttgatgccaa ggcaggagga gcagccagta agggacggaa
      421 aggtgcaaaa agcagcagaa cagccgcaaa ggtggcgctg atgaagctga agatgcatgc
      481 tgacggggat aagtccctgc cgcagacaga aagaacgtac ttccaggtat acttaccaaa
      541 ggggagccaa gagaaaagca aagccatgtt cttctgccta cggtggagca tcgggaaggt
      601 tgtggacgtt gcagcgtctc tagctggtct caggaatgaa aacaacaagc taacagcaaa
      661 gaagctgagg ctgtgccacg tcccttcagg agaagccttg cctttggatc acacattgga
      721 aaggtggatc acgaaggagg aatgcccttt atataatgga gggaatgtta ttttggaata
      781 tcttaacgag gaagagcagt ttgtaaaaga tgttgactct tacttggaat agtcattcaa
      841 ggactcaagc cagactttat aagcagaaac cattctaagt agatagtcag tttcttttac
      901 tacagatact tttttaaaac tccaaaagtt gctgacttaa aattcatttc cattaagtca
      961 taatttacac cattagtttt ctcctaagtt ccgtgttctg tgttttagag ttatgtgctg
     1021 atagttactc acagagtgtt tttattagct gctcctgggt taggctgcag aaacattaac
     1081 aagcctgtct ttcctgttac actaacagcc actcactggc cattgtgtca cgctctgcac
     1141 accttctctc cgaggccctg ctcactctac gctcaccatt ctgtgatttt cccattctgc
     1201 agcagagaaa gatgcggatg gcagactctt cggtggggtc ttacaagtgg tacttgccat
     1261 cattgttgaa agcaccttct atgattaagc ctaatattat ggggtcagaa tacatagcct
     1321 tacagtatac ctaaatcatg acgtatggat tgcagagtct tgcagatcct ctcattcagt
     1381 cttccaggca tttgggtaag aaaccacata cctaagaagg gaaagttatt ttcttggtat
     1441 catgtaattg cactggatat gtttctggta aagaattttt ctacaatagg attcatcttt
     1501 ttattggtat gaatgaatta cagatgagaa gacattgact ttgttacagt cttgctctct
     1561 gtaccaaagc aatacaatta ttgcatttta tctatacatt gaaataaaac ctcttgggga
     1621 atgctttctg tctacacatg agcagaatga atgttttctg tctgtgtagg atgtaggact
     1681 acatacacta tggaggaaat ccgcacaccc cacccccttt ctgtaccagt tttcacagca
     1741 gtagatcaat tagagagtaa actgagcatg ctcacttggt ccttgtcagc tccatctttt
     1801 catgttcaca ccatagtgat catttcctgc tgttatcagc ttctaaattc attcctttat
     1861 agttatctgc ctacttgctt gaaacgccag tgtctgatct ccagtagtgt aggcaaaagg
     1921 cagagttgtg aggcaagttg caaataagtg aatagaccgt atagctgcat cccaataact
     1981 gttttattgg aaactatcaa actagaaata gaaatatttt tatttagaaa tagttagaat
     2041 aactagttac aaatattgtt taaaagccca tgtaccagat tttttgtctt ttgttttttg
     2101 ggtttttttg ttttgttttg ttttgttttt ttttgtgatg cctaaagttt taataccaac
     2161 cagtacttta ctttaataac aattcttgaa catagtctag gaaggatgaa aaacgtcttc
     2221 tctcagtgat cagacaaaag agcaaggcta tccagagagg ggctgccaca gtgggtacac
     2281 cgtccataag ctaggccagg tcctgggtga tggggcccac aggggagagg atgccagggt
     2341 gagcaacctc ggtactaaag actggcagct aaggcatgca cagtctaaag agaacaaagt
     2401 gtagatggaa tctcagtccc ccaactccct gtgtccaaat actctgaagg cagaaatctc
     2461 aggttttacg ttgtgtgcct aataaaatgg gagggtcaca ctgtctgcat cctacctggt
     2521 gttttcactt gctgcatggg atacacagca taggaaagga gtgtagatga actgttggaa
     2581 taatactttg gcactaacaa gcaccagtct aaagaataag gaaacagatg agaacactgg
     2641 gtaataggat tcatcctagc tacatttatc aggtttctgt cctgaagttt tcagaagatg
     2701 ggttaggaga gcctgaaagc aaaaacaaaa acaaataaaa attctgaagt gcttgggagg
     2761 aaaagcatac actcgcttta ttttgtaagt tacacgtacc acagtatgtg tgtggagtca
     2821 ggacaacttg tgggagttgg ttctattcta taagtgttct gcagatcaaa gtcaagtgtt
     2881 caccttggct gcaagtgccc ttacccactg agatatctca cttggctctt tattcatttg
     2941 atacacattt actatgtacc ccaggctggc cttaaccatg taatagtcct gctttagcca
     3001 ccagggtcag gtgttttgtc actttaaagt tgcataggaa gcagactgtg gtggcgcact
     3061 aggagcaaaa gcaggcggag ctctaagctc aggaccagcc tgatctacag agtgagatcc
     3121 aggacagcca gagccttaca gtcagactct gccctaaggg gggttgggaa tttaactggt
     3181 gccattgagt agattagcct tattctctgt tctcagtgtg agtaaatgtg tcttaatgtc
     3241 ccatgtggaa atcatgatac tgaagtctac catatttgaa aaattaacct acaatcacag
     3301 ccttaaaaaa aaaatgtcca actgtgaaaa ggccacaatg aagctcgtta ttttgtattc
     3361 taacacccag acacacatac agacgcagat acacacctag aggtagaact agaatagcca
     3421 tctgtgtagt ggtaggtagt agagggttta ttgtttttgt ttttattgtg tggcgtcctc
     3481 tcatttggga aattgggtct gtggattgct tttcctcatc catggaggct aaggcacagt
     3541 tgggtcagtt gactggtgcc catgacccca gctgtgcata gtgagtcatg ttacaaagac
     3601 tgggtcattg gaactaaggt cagtcagtac cttttcacca tcaaattcca aatgcccagg
     3661 agcagcagcc acttagttgg gctttaccac cttatgttgt tacgtggtga ccctgcatga
     3721 tattttccca cttacagata ccaagggtag actaagtgtt tgctttacct tgtagatttg
     3781 ctctagaact ctaggattat tagcatcaag ggtgctctca aggccagcca atgtagctaa
     3841 tgactaacct gggccattgt gcctcagttt agtggcccaa tgttataggt gtgaatcagg
     3901 gtacaaaggg cacctgcttc agtttctgat catttgtgcc ccgaacaagg aattggacta
     3961 ggaatggaca cagggatgct ggtaggaaaa gatagtttat taagaaagtg tttcctaaga
     4021 gggacgtgga ccaaggctgg agaaaggtga gaaggttagt ggtgcctatt cagagcagat
     4081 tgtcatattt gtcactgtag cttggagatc agtatgacta ttccatcata tcagagtcaa
     4141 aacggcctga ctgtgtgctg atgtgacacg agagaatgca atggagggag aggaagggga
     4201 cgccttcatt tgttgtttgt ttgcatgctt tgttacaaga cagcctggta ggaaggggct
     4261 tccagtcttt tagctaattg gcttctttca tcgccaattc tcacttcctc tgtcttctgt
     4321 gctccctctc cccctccccc tttctcctcc ccattccctc cccaccacac actctcctgt
     4381 cacaccagtg tgtagttagg ccatttgcct ctttcttgat ggaatagtca tacagattca
     4441 agtcatgata tctgtcttag gggttttgtt ttgttttgtt ctccctggct gcttttattt
     4501 tattattttt ctgaggacca aaagtaataa ctccaagtgt ttttcctcag gtaataagga
     4561 actcaggaag agagattagg ttttttgttt gttgtaagag acacctgtta aatgcaaggg
     4621 tttattttta tgttttctta actacaagtt aaactggttg tgtcacttgg ctcactcgat
     4681 agctttatgc gggtttgaag tacaacagcc ctcctcctgg accttgaccg accaaaccta
     4741 actgttacct aactcacatt tgcgccttca gtgactgaag acctgtaaga aaaaatgatc
     4801 ttttgttttt taataaaacc gggttggcac acatggtttg tttaaacttt caaaa
//
