LOCUS       XM_039095407            5060 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger E-box binding homeobox 1
            (Zeb1), transcript variant X7, mRNA.
ACCESSION   XM_039095407
VERSION     XM_039095407.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5060
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5060
                     /gene="Zeb1"
                     /gene_synonym="deltaEF1; Tcf8; Zfhx1a"
                     /note="zinc finger E-box binding homeobox 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 70 ESTs, 1 long SRA read, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:25705"
                     /db_xref="RGD:3831"
     CDS             361..3222
                     /gene="Zeb1"
                     /gene_synonym="deltaEF1; Tcf8; Zfhx1a"
                     /codon_start=1
                     /product="zinc finger E-box-binding homeobox 1 isoform X6"
                     /protein_id="XP_038951335.1"
                     /db_xref="GeneID:25705"
                     /db_xref="RGD:3831"
                     /translation="MTNATQMQKTSKTMIPTWKSSCSNRTPRSSTLRHPRRTSGRARQ
                     KPAVMMTMRHVTQSGGNRKFKCTECGKAFKYKHHLKEHLRIHSGEKPYECPNCKKRFS
                     HSGSYSSHISSKKCISLMPVNGRPRSGLKTSQCSSPSLSTSPGSPTRPQIRQKIENKP
                     LQEPLSVNQIKTEPVDYEFKPIVVASGINCSTPLQNGVFSGGGQLQATSSPQGVVQAV
                     VLPTVGLVSPISINLSDIQNVLKVAVDGNIIRQVLENNQASLASKEQEAVSASSIQQG
                     GHSVISAISLPLVDQDGTTKIIINYSLEQPGQLQVVPQNLKKENPAPPKSCKSEKSPE
                     DLTVKSEKDKSFDGAADESTCLLCEDCPGDLNALPELKHYDPEHPAQPPPPAPATEKP
                     ESSASSAGNGDLSPSQPPLKNLLSLLKAYYALNAQPSTEELTKIADSVNLPLDVVKKW
                     FEKMQAGQIPGQSLEPPSPGPGSGNIPAKTEEQPQPVDGNEPQEDSTRGQSPLKMTSS
                     PVLPVGSAINGSRSCTSSPSPLNLSSARNPQGYSCVSEGTQEEPQVEPLDLSLPKQQG
                     ELLERSTVSSVYQNSVYSVQEEPLNLSCAKKEPQKDSCVTDSEPVVNVVPPSANPINI
                     AIPTVTAQLPTIVAIADQNSVPCLRALAANKQTILIPQVAYTYSATVSPAMQEPPVKV
                     IQPNGNQDERQDTSSEGVSVEDQNDSDCTPPKKKTRKAENGMYACDLCDKIFQKSSSL
                     LRHKYEHTGKRPHECGICRKAFKHKHHLIEHMRLHSGEKPYQCDKCGKRFSHSGSYSQ
                     HMNHRYSYCKRGAEDRDAMEQEDTGPEALPEVLPTELVGARASPSQADSDERESLTRE
                     EDEDSEKEEEEEDKEMEELQEDKECENPQEEEEEEEEEEEEEEEEEEEEAEEAEHEAA
                     AAKTGGAVEEEAAQQAGSFQQKASGSESKRLSEEKTNEA"
ORIGIN      
        1 gtccatcccg tcactgataa tcttaaactt ccatcacaag aagactgtag aggtccctcc
       61 cgcaccaaga accttctgca gatcttttca gtgttcttgg aggcgggctg agagctcggt
      121 cggtcagttt gtcagccacc ttgttctcta aagttacaaa ttataatact gtggtagaag
      181 caaattcaga ttcggatgat gaagacaaac tccatattgt ggaagaagaa agtgtcacag
      241 atgcagctga ctgtgaaggt ggtgtgccag atgatgagct gccaacagac cagacagtgt
      301 taccaggagg cagtgacagg gcgggcagtg ccaagaactg ctggcaagac gacgtaaaag
      361 atgacgaatg cgactcagat gcagaaaacg agcaaaacca tgatcccaac gtggaagagt
      421 tcctgcagca acaggacacc gcggtcatct accctgaggc acccgaggag gaccagcggc
      481 agggcacgcc agaagccagc ggtcatgatg acaatgagac atgtgacaca gtctggaggt
      541 aaccgtaagt tcaagtgcac cgagtgtggg aaagcgttca agtacaaaca ccatctgaag
      601 gagcacttac ggatccacag tggagagaag ccatatgaat gcccaaactg caagaaacgt
      661 ttttcccatt ctggctctta tagctcacac ataagcagta agaagtgtat tagcttgatg
      721 cctgtgaatg gtaggcccag atcaggactc aagacatctc agtgttcctc gccatctctt
      781 tcaacatcac caggcagtcc cacacgccca cagatacggc agaagataga gaataaaccc
      841 cttcaagaac cgctttctgt aaaccaaatc aaaactgaac ctgtggatta tgagttcaaa
      901 cccatagtgg ttgcttcagg aatcaactgt tcaacccctt tacaaaatgg ggtttttagc
      961 ggtggtggcc aattgcaggc aaccagttct cctcagggtg tggtgcaagc tgttgttctg
     1021 ccaacagttg gtttggtatc tcccataagt atcaacttaa gtgacattca gaatgtactt
     1081 aaagtggctg tagatggtaa cataatacga caggttttgg agaataatca agccagtctt
     1141 gcatccaaag agcaagaagc cgtgagtgct tcatccatcc agcagggcgg ccattctgtc
     1201 atttctgcca tcagtcttcc tttagttgat caggatggca caaccaaaat catcatcaac
     1261 tacagtcttg agcagcccgg ccaacttcag gttgttcccc agaatctaaa gaaagaaaac
     1321 ccagcccctc caaagagctg caaaagtgag aagtcaccag aagatcttac tgtcaagtca
     1381 gagaaggaca aaagctttga tggggctgcg gatgagagca cttgcctttt gtgtgaggac
     1441 tgcccaggag acctcaatgc acttccagaa ctaaagcact atgacccaga gcaccctgct
     1501 caacctccac cccctgcccc agccaccgag aagccagagt cctctgcttc atcagccggc
     1561 aatggagatt tgtctcccag tcagccacct ttaaagaacc ttctgtcgct cttaaaagcc
     1621 tactatgctc tgaatgcaca gccaagcaca gaagagctca ccaagattgc cgattctgtg
     1681 aacctgccgc tggatgtagt taaaaagtgg tttgaaaaga tgcaagctgg acagattccc
     1741 gggcagtctc ttgaaccacc ttctccagga ccggggtcag gaaacatccc tgcaaaaact
     1801 gaggagcagc ctcaacctgt ggatggaaat gagccccagg aagacagcac acgtggacag
     1861 agtcctctca agatgacaag ctctccagtt ttaccagtag gatcagccat taacggttcc
     1921 agaagttgca catcatcccc atcccctcta aacctttcct cagccaggaa cccgcagggt
     1981 tactcttgtg tgtcagaggg tacccaggag gagccccaag tagaacctct tgatctctca
     2041 ctaccaaagc aacagggaga gttactggaa aggtcgacag tcagtagcgt ttaccagaac
     2101 agtgtttatt ctgtccagga agaacccttg aacttgtctt gtgcaaaaaa ggagccacaa
     2161 aaggacagtt gtgttacaga ctcagaacca gttgtaaatg tagtcccacc aagtgccaac
     2221 cccataaaca ttgctattcc tacagtcact gcccagttac ccacaatcgt ggccatcgct
     2281 gaccagaaca gtgttccgtg cttacgggca ctcgctgcca acaagcagac tattctgatt
     2341 ccccaagtgg catatacata ctccgctaca gtcagcccag ccatgcagga gccaccagtg
     2401 aaggtgatcc agccaaatgg aaaccaggat gaaagacaag acactagctc agaaggagtc
     2461 tccgtggagg accagaatga ctctgactgc acgccaccca aaaagaaaac tcggaaggca
     2521 gagaatggga tgtacgcatg tgacctgtgt gacaagatat ttcagaagag cagctccctg
     2581 ctgagacaca aatatgagca tacaggtaag aggccccacg agtgcggaat ctgtagaaag
     2641 gcatttaaac acaagcatca tttgattgag cacatgcgac tgcactctgg ggaaaagccc
     2701 taccaatgtg acaagtgtgg caagcgcttc tcacactcgg ggtcttactc tcaacacatg
     2761 aatcaccgct actcctactg caagagagga gctgaagaca gagatgccat ggagcaggaa
     2821 gacactgggc cggaagccct gccggaagtc ctgcccactg agcttgttgg tgcccgggca
     2881 tctccctcac aggctgactc ggacgagaga gaaagtttga caagggaaga ggatgaagac
     2941 agtgaaaagg aggaggagga ggaggataaa gagatggaag aattgcagga agacaaggaa
     3001 tgtgagaacc cacaggagga ggaggaggag gaagaggagg aagaagaaga ggaggaggag
     3061 gaagaggaag aggaggcaga ggaagctgag catgaggcgg cagcagccaa gactgggggt
     3121 gcagtggagg aggaagcggc tcagcaggca ggcagcttcc agcagaaggc cagcgggagc
     3181 gagagcaagc gactgtctga agagaagaca aatgaagcct aggagctctt ccaaaaggaa
     3241 gtcctgcttg gtaatgaaat ttgctctata ttacccacgc ttttcatgga aacatggctc
     3301 ctgtgctatg gttcctgctc actactgtgt aatgtcagaa ctgaaaaaca aaatactaaa
     3361 aaaaaaaaaa aaaaaaaaaa aaaaaaatcc gggtgtgcct gaacctcaaa cctagtaatt
     3421 tttcatgcag ttttcaaagt taggaacaag tttgtaacat gaagcagatt agaaaacaaa
     3481 ggtttctcag caggttacag gaagctcgat gggcatctgg cttggctggc agtattatca
     3541 ctcttacgtt gttcattcta agctgtacaa tgggagaaat tttataattt tttattggta
     3601 aacatatgct aaatccactt cagtatttta ttatgttttt tttaaatgtg agaacttctg
     3661 cactacagaa ttcccttcac cgagcagtag aaagcagttc agaccgtgct ggctacctgc
     3721 tgccacccca ccagtcagga ggtaggacct ctgaccttag atgccatgct gccatctaac
     3781 gtgcatcgct agccttaagg aagcagagag aggagcggga gtttcttact cgtgtgatct
     3841 taaatggagt tcaaaggttg tccttgagtt ctgactgcag ggacggccag tgttgatgtg
     3901 gcgaggacgg cagaggcggc agaatcagtg ttcgtgattg tgtttgcgta cgtgacagca
     3961 actatgaagg atctatagga agcgctgtgt ccctttggcc ttaagcaaga cctatgtgct
     4021 gtaagtgcca ttgtcagtgt ttcaaggctg taacagcctt cactcagtgt gtggcctaca
     4081 ataactagca tttgttgatt tgtttgttgt gtcaaaattc ccaaataaaa ctcaaaccac
     4141 tgactctgtc agagaagctg aagcactggg acatttcaca cttctgttcc tcagtattca
     4201 tgttacgttg attgactcag aaatctctac agaaataaaa gggaaattct ccaactactt
     4261 agtccatgta cttgcgtgtc agacatggat aagccattgg ttcttggctc acagccattt
     4321 ccaaatgtta gttattacgg acccaggtga tgaacagcag ctgattttta cctaccagta
     4381 ttattttatt tcttttagtt tgtagatctg tgcaacattt ttgtactgta cgtcttcaag
     4441 cctggcagta ttaataccct tcttactgac acgtactttt agttttagaa aacttttata
     4501 tttatgtgtc ttatttttat atttctttat ttattacaca gtgtagtgta taatactgta
     4561 gtttgtatta atacaataat atattttagt atgaaatttt ggaaagttga taagatttaa
     4621 agtagagatg caattggttc tcgtgcattg agatttgatt taacagtgtt ctgttaacat
     4681 ttatactcgc ctcggactgt agaacagagt ttaaatggga atgtattagt tttacaacta
     4741 caatcaagtc attctccctt tacccagttt ttaatatgaa actcttacac tttgaaactc
     4801 actgtgtgtg actcatagca tgctgctctt ctgttaagag ttagcccagc cataactcat
     4861 tcccttagca agccaaatta gaattgcctt ctgtaaacag tgttgggaac aatgtttaac
     4921 atggtgtgcc aatttgttcc tgtatccatg tatgtaagct accaatccga ctcttccttt
     4981 taagttcctt gttacaccat ggtcattttc tagtttttta ccagactccc agctcacaat
     5041 aaacgcatca acaagcctga
//
