LOCUS       XM_039095400            5379 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger E-box binding homeobox 1
            (Zeb1), transcript variant X1, mRNA.
ACCESSION   XM_039095400
VERSION     XM_039095400.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5379
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5379
                     /gene="Zeb1"
                     /gene_synonym="deltaEF1; Tcf8; Zfhx1a"
                     /note="zinc finger E-box binding homeobox 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 79 ESTs, 1 long SRA read, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:25705"
                     /db_xref="RGD:3831"
     CDS             188..3541
                     /gene="Zeb1"
                     /gene_synonym="deltaEF1; Tcf8; Zfhx1a"
                     /codon_start=1
                     /product="zinc finger E-box-binding homeobox 1 isoform X1"
                     /protein_id="XP_038951328.1"
                     /db_xref="GeneID:25705"
                     /db_xref="RGD:3831"
                     /translation="MLLSCERNFWPRSVLLKFNPTAVTSRPVTNYNTVVEANSDSDDE
                     DKLHIVEEESVTDAADCEGGVPDDELPTDQTVLPGGSDRAGSAKNCWQDDVKDDECDS
                     DAENEQNHDPNVEEFLQQQDTAVIYPEAPEEDQRQGTPEASGHDDNGTPDAFSQLLTC
                     PYCDRGYKRFTSLKEHIKYRHEKNEDNFSCSLCSYTFAYRTQLERHMTSHKSGREQRH
                     VTQSGGNRKFKCTECGKAFKYKHHLKEHLRIHSGEKPYECPNCKKRFSHSGSYSSHIS
                     SKKCISLMPVNGRPRSGLKTSQCSSPSLSTSPGSPTRPQIRQKIENKPLQEPLSVNQI
                     KTEPVDYEFKPIVVASGINCSTPLQNGVFSGGGQLQATSSPQGVVQAVVLPTVGLVSP
                     ISINLSDIQNVLKVAVDGNIIRQVLENNQASLASKEQEAVSASSIQQGGHSVISAISL
                     PLVDQDGTTKIIINYSLEQPGQLQVVPQNLKKENPAPPKSCKSEKSPEDLTVKSEKDK
                     SFDGAADESTCLLCEDCPGDLNALPELKHYDPEHPAQPPPPAPATEKPESSASSAGNG
                     DLSPSQPPLKNLLSLLKAYYALNAQPSTEELTKIADSVNLPLDVVKKWFEKMQAGQIP
                     GQSLEPPSPGPGSGNIPAKTEEQPQPVDGNEPQEDSTRGQSPLKMTSSPVLPVGSAIN
                     GSRSCTSSPSPLNLSSARNPQGYSCVSEGTQEEPQVEPLDLSLPKQQGELLERSTVSS
                     VYQNSVYSVQEEPLNLSCAKKEPQKDSCVTDSEPVVNVVPPSANPINIAIPTVTAQLP
                     TIVAIADQNSVPCLRALAANKQTILIPQVAYTYSATVSPAMQEPPVKVIQPNGNQDER
                     QDTSSEGVSVEDQNDSDCTPPKKKTRKAENGMYACDLCDKIFQKSSSLLRHKYEHTGK
                     RPHECGICRKAFKHKHHLIEHMRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCK
                     RGAEDRDAMEQEDTGPEALPEVLPTELVGARASPSQADSDERESLTREEDEDSEKEEE
                     EEDKEMEELQEDKECENPQEEEEEEEEEEEEEEEEEEEEAEEAEHEAAAAKTGGAVEE
                     EAAQQAGSFQQKASGSESKRLSEEKTNEA"
ORIGIN      
        1 ggttccagat gcttcggatt acaggtttct gagcatactc ccctagggct gtttttgtcc
       61 caaaggcaag tcactacaac tcttgagcac cacgaccctg gggtctgcag ggcggggagg
      121 caaggtgaca gcaggtgagc taggcgcgga tgaggaagtg agcctggcac cgtgtggagg
      181 attactcatg ctgctttcct gcgagcggaa tttctggcct cggtctgtcc tgctgaagtt
      241 caacccaact gctgtcactt cccgtccggt tacaaattat aatactgtgg tagaagcaaa
      301 ttcagattcg gatgatgaag acaaactcca tattgtggaa gaagaaagtg tcacagatgc
      361 agctgactgt gaaggtggtg tgccagatga tgagctgcca acagaccaga cagtgttacc
      421 aggaggcagt gacagggcgg gcagtgccaa gaactgctgg caagacgacg taaaagatga
      481 cgaatgcgac tcagatgcag aaaacgagca aaaccatgat cccaacgtgg aagagttcct
      541 gcagcaacag gacaccgcgg tcatctaccc tgaggcaccc gaggaggacc agcggcaggg
      601 cacgccagaa gccagcggtc atgatgacaa tggaacacca gatgcatttt cccagttgct
      661 cacctgcccg tattgtgata gaggctacaa gcgctttacc tctttgaaag aacacattaa
      721 gtaccgccat gagaagaatg aagacaactt cagctgctcc ctgtgcagtt acacctttgc
      781 atacagaacc cagcttgaac gtcatatgac atcacataag tcaggaagag agcaaagaca
      841 tgtgacacag tctggaggta accgtaagtt caagtgcacc gagtgtggga aagcgttcaa
      901 gtacaaacac catctgaagg agcacttacg gatccacagt ggagagaagc catatgaatg
      961 cccaaactgc aagaaacgtt tttcccattc tggctcttat agctcacaca taagcagtaa
     1021 gaagtgtatt agcttgatgc ctgtgaatgg taggcccaga tcaggactca agacatctca
     1081 gtgttcctcg ccatctcttt caacatcacc aggcagtccc acacgcccac agatacggca
     1141 gaagatagag aataaacccc ttcaagaacc gctttctgta aaccaaatca aaactgaacc
     1201 tgtggattat gagttcaaac ccatagtggt tgcttcagga atcaactgtt caaccccttt
     1261 acaaaatggg gtttttagcg gtggtggcca attgcaggca accagttctc ctcagggtgt
     1321 ggtgcaagct gttgttctgc caacagttgg tttggtatct cccataagta tcaacttaag
     1381 tgacattcag aatgtactta aagtggctgt agatggtaac ataatacgac aggttttgga
     1441 gaataatcaa gccagtcttg catccaaaga gcaagaagcc gtgagtgctt catccatcca
     1501 gcagggcggc cattctgtca tttctgccat cagtcttcct ttagttgatc aggatggcac
     1561 aaccaaaatc atcatcaact acagtcttga gcagcccggc caacttcagg ttgttcccca
     1621 gaatctaaag aaagaaaacc cagcccctcc aaagagctgc aaaagtgaga agtcaccaga
     1681 agatcttact gtcaagtcag agaaggacaa aagctttgat ggggctgcgg atgagagcac
     1741 ttgccttttg tgtgaggact gcccaggaga cctcaatgca cttccagaac taaagcacta
     1801 tgacccagag caccctgctc aacctccacc ccctgcccca gccaccgaga agccagagtc
     1861 ctctgcttca tcagccggca atggagattt gtctcccagt cagccacctt taaagaacct
     1921 tctgtcgctc ttaaaagcct actatgctct gaatgcacag ccaagcacag aagagctcac
     1981 caagattgcc gattctgtga acctgccgct ggatgtagtt aaaaagtggt ttgaaaagat
     2041 gcaagctgga cagattcccg ggcagtctct tgaaccacct tctccaggac cggggtcagg
     2101 aaacatccct gcaaaaactg aggagcagcc tcaacctgtg gatggaaatg agccccagga
     2161 agacagcaca cgtggacaga gtcctctcaa gatgacaagc tctccagttt taccagtagg
     2221 atcagccatt aacggttcca gaagttgcac atcatcccca tcccctctaa acctttcctc
     2281 agccaggaac ccgcagggtt actcttgtgt gtcagagggt acccaggagg agccccaagt
     2341 agaacctctt gatctctcac taccaaagca acagggagag ttactggaaa ggtcgacagt
     2401 cagtagcgtt taccagaaca gtgtttattc tgtccaggaa gaacccttga acttgtcttg
     2461 tgcaaaaaag gagccacaaa aggacagttg tgttacagac tcagaaccag ttgtaaatgt
     2521 agtcccacca agtgccaacc ccataaacat tgctattcct acagtcactg cccagttacc
     2581 cacaatcgtg gccatcgctg accagaacag tgttccgtgc ttacgggcac tcgctgccaa
     2641 caagcagact attctgattc cccaagtggc atatacatac tccgctacag tcagcccagc
     2701 catgcaggag ccaccagtga aggtgatcca gccaaatgga aaccaggatg aaagacaaga
     2761 cactagctca gaaggagtct ccgtggagga ccagaatgac tctgactgca cgccacccaa
     2821 aaagaaaact cggaaggcag agaatgggat gtacgcatgt gacctgtgtg acaagatatt
     2881 tcagaagagc agctccctgc tgagacacaa atatgagcat acaggtaaga ggccccacga
     2941 gtgcggaatc tgtagaaagg catttaaaca caagcatcat ttgattgagc acatgcgact
     3001 gcactctggg gaaaagccct accaatgtga caagtgtggc aagcgcttct cacactcggg
     3061 gtcttactct caacacatga atcaccgcta ctcctactgc aagagaggag ctgaagacag
     3121 agatgccatg gagcaggaag acactgggcc ggaagccctg ccggaagtcc tgcccactga
     3181 gcttgttggt gcccgggcat ctccctcaca ggctgactcg gacgagagag aaagtttgac
     3241 aagggaagag gatgaagaca gtgaaaagga ggaggaggag gaggataaag agatggaaga
     3301 attgcaggaa gacaaggaat gtgagaaccc acaggaggag gaggaggagg aagaggagga
     3361 agaagaagag gaggaggagg aagaggaaga ggaggcagag gaagctgagc atgaggcggc
     3421 agcagccaag actgggggtg cagtggagga ggaagcggct cagcaggcag gcagcttcca
     3481 gcagaaggcc agcgggagcg agagcaagcg actgtctgaa gagaagacaa atgaagccta
     3541 ggagctcttc caaaaggaag tcctgcttgg taatgaaatt tgctctatat tacccacgct
     3601 tttcatggaa acatggctcc tgtgctatgg ttcctgctca ctactgtgta atgtcagaac
     3661 tgaaaaacaa aatactaaaa aaaaaaaaaa aaaaaaaaaa aaaaaatccg ggtgtgcctg
     3721 aacctcaaac ctagtaattt ttcatgcagt tttcaaagtt aggaacaagt ttgtaacatg
     3781 aagcagatta gaaaacaaag gtttctcagc aggttacagg aagctcgatg ggcatctggc
     3841 ttggctggca gtattatcac tcttacgttg ttcattctaa gctgtacaat gggagaaatt
     3901 ttataatttt ttattggtaa acatatgcta aatccacttc agtattttat tatgtttttt
     3961 ttaaatgtga gaacttctgc actacagaat tcccttcacc gagcagtaga aagcagttca
     4021 gaccgtgctg gctacctgct gccaccccac cagtcaggag gtaggacctc tgaccttaga
     4081 tgccatgctg ccatctaacg tgcatcgcta gccttaagga agcagagaga ggagcgggag
     4141 tttcttactc gtgtgatctt aaatggagtt caaaggttgt ccttgagttc tgactgcagg
     4201 gacggccagt gttgatgtgg cgaggacggc agaggcggca gaatcagtgt tcgtgattgt
     4261 gtttgcgtac gtgacagcaa ctatgaagga tctataggaa gcgctgtgtc cctttggcct
     4321 taagcaagac ctatgtgctg taagtgccat tgtcagtgtt tcaaggctgt aacagccttc
     4381 actcagtgtg tggcctacaa taactagcat ttgttgattt gtttgttgtg tcaaaattcc
     4441 caaataaaac tcaaaccact gactctgtca gagaagctga agcactggga catttcacac
     4501 ttctgttcct cagtattcat gttacgttga ttgactcaga aatctctaca gaaataaaag
     4561 ggaaattctc caactactta gtccatgtac ttgcgtgtca gacatggata agccattggt
     4621 tcttggctca cagccatttc caaatgttag ttattacgga cccaggtgat gaacagcagc
     4681 tgatttttac ctaccagtat tattttattt cttttagttt gtagatctgt gcaacatttt
     4741 tgtactgtac gtcttcaagc ctggcagtat taataccctt cttactgaca cgtactttta
     4801 gttttagaaa acttttatat ttatgtgtct tatttttata tttctttatt tattacacag
     4861 tgtagtgtat aatactgtag tttgtattaa tacaataata tattttagta tgaaattttg
     4921 gaaagttgat aagatttaaa gtagagatgc aattggttct cgtgcattga gatttgattt
     4981 aacagtgttc tgttaacatt tatactcgcc tcggactgta gaacagagtt taaatgggaa
     5041 tgtattagtt ttacaactac aatcaagtca ttctcccttt acccagtttt taatatgaaa
     5101 ctcttacact ttgaaactca ctgtgtgtga ctcatagcat gctgctcttc tgttaagagt
     5161 tagcccagcc ataactcatt cccttagcaa gccaaattag aattgccttc tgtaaacagt
     5221 gttgggaaca atgtttaaca tggtgtgcca atttgttcct gtatccatgt atgtaagcta
     5281 ccaatccgac tcttcctttt aagttccttg ttacaccatg gtcattttct agttttttac
     5341 cagactccca gctcacaata aacgcatcaa caagcctga
//
