LOCUS       NM_001039336            1932 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger DHHC-type palmitoyltransferase 20
            (Zdhhc20), mRNA.
ACCESSION   NM_001039336 XM_224172
VERSION     NM_001039336.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Rana,M.S., Kumar,P., Lee,C.J., Verardi,R., Rajashankar,K.R. and
            Banerjee,A.
  TITLE     Fatty acyl recognition and transfer by an integral membrane
            S-acyltransferase
  JOURNAL   Science 359 (6372) (2018)
   PUBMED   29326245
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Ohno,Y., Kashio,A., Ogata,R., Ishitomi,A., Yamazaki,Y. and
            Kihara,A.
  TITLE     Analysis of substrate specificity of human DHHC protein
            acyltransferases using a yeast expression system
  JOURNAL   Mol Biol Cell 23 (23), 4543-4551 (2012)
   PUBMED   23034182
REFERENCE   3  (bases 1 to 1932)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 1932)
  AUTHORS   Ohno,Y., Kihara,A., Sano,T. and Igarashi,Y.
  TITLE     Intracellular localization and tissue-specific distribution of
            human and yeast DHHC cysteine-rich domain-containing proteins
  JOURNAL   Biochim Biophys Acta 1761 (4), 474-483 (2006)
   PUBMED   16647879
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Dec 5, 2020 this sequence version replaced NM_001039336.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY886539.1, SRR26643293.59769.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-299               JAXUCZ010000015.1  36154234-36154532   c
            300-326             JAXUCZ010000015.1  36140678-36140704   c
            327-430             JAXUCZ010000015.1  36135240-36135343   c
            431-551             JAXUCZ010000015.1  36127179-36127299   c
            552-621             JAXUCZ010000015.1  36122432-36122501   c
            622-654             JAXUCZ010000015.1  36121090-36121122   c
            655-775             JAXUCZ010000015.1  36120269-36120389   c
            776-932             JAXUCZ010000015.1  36111415-36111571   c
            933-1059            JAXUCZ010000015.1  36106703-36106829   c
            1060-1149           JAXUCZ010000015.1  36104424-36104513   c
            1150-1265           JAXUCZ010000015.1  36102816-36102931   c
            1266-1342           JAXUCZ010000015.1  36100243-36100319   c
            1343-1932           JAXUCZ010000015.1  36098701-36099290   c
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..1932
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /note="zinc finger DHHC-type palmitoyltransferase 20"
                     /db_xref="GeneID:305923"
                     /db_xref="RGD:1305755"
     exon            1..299
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..1303
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /EC_number="2.3.1.225"
                     /note="membrane-associated DHHC24 zinc finger protein;
                     zinc finger, DHHC domain containing 20; probable
                     palmitoyltransferase ZDHHC20; zinc finger, DHHC-type
                     containing 20"
                     /codon_start=1
                     /product="palmitoyltransferase ZDHHC20"
                     /protein_id="NP_001034425.2"
                     /db_xref="GeneID:305923"
                     /db_xref="RGD:1305755"
                     /translation="MAPWTLWRCCQRVVGWVPVLFITFVVVWSYYAYVVELCVSTVSR
                     TGEKGKTVVYLVAFHLFFVMFVWSYWMTIFTSPASPSKEFYLSNSEKERYEKEFSQER
                     QQDILRRAARDLPVYTTSASKAIRYCEKCQLIKPDRAHHCSACDRCVLKMDHHCPWVN
                     NCVGFTNYKFFMLFLLYSLLYCLFVAATVLEYFIKFWTNEPTVLTFPSAKFPSAKFHV
                     LFLFFVSAMFFVSVLSLFSYHCWLVGKNRTTIESFRAPMFSYGIDGNGFSLGCSKNWR
                     QVFGDEKKYWLVPIFSSLGDGCSFPTRLVGMDPEQASIANQGEYIRSIGSNQPFPIKP
                     LSESKNRLLDSESQWLENGAEEGITKSGTNNHVTVAIEN"
     exon            300..326
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            327..430
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            431..551
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            552..621
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            622..654
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            655..775
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            776..932
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            933..1059
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            1060..1149
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1265
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1342
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1932
                     /gene="Zdhhc20"
                     /gene_synonym="RGD1305755"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggatgctg ggcggggacg gacccgggcc gggcgcccgg agaggcggag ttgcggcgtc
       61 gcccttcgcc acagctcgcg gcagccgcgc ctcgggggcg ggggaggtgg tgacagagcc
      121 gcaggggtct tggggccctg cagaaccgtg ggctgctgga ctaggcaatc agcagaagaa
      181 catggcgccc tggacactct ggcgctgctg ccaacgcgta gtgggctggg ttccggtgct
      241 cttcatcacc tttgtggtcg tctggtccta ctacgcgtac gtggtggagc tgtgcgtgag
      301 tactgtttcc agaacaggag aaaaaggaaa gaccgttgtt taccttgtgg ctttccatct
      361 gttctttgtt atgtttgtat ggtcctattg gatgacaatt ttcacatctc ccgctagccc
      421 ctccaaagag ttctacttgt caaactctga gaaggaacgt tatgagaagg aattcagcca
      481 agaaagacag caagacattt tgagaagagc agcaagagac ttgcctgtct acaccacgtc
      541 agcttcaaaa gctatccgat attgtgaaaa atgtcagttg attaaacctg accgggccca
      601 tcactgctca gcatgtgaca gatgtgttct taagatggat catcactgtc catgggtgaa
      661 taactgtgtg ggatttacta attacaagtt cttcatgctg tttttgttgt attctctgct
      721 gtattgcctt ttcgtggctg caacagtttt agagtatttt ataaaatttt ggacgaatga
      781 accaacagtt ttaacgttcc ccagcgcaaa gttccccagc gcaaagttcc atgttctgtt
      841 cctgttcttt gtgtctgcaa tgttcttcgt cagtgtgctt tcactgttca gctaccattg
      901 ctggttggtt ggaaaaaata gaacaacaat agaatcattt cgtgcaccta tgttttctta
      961 tggaatagat ggaaatggtt tctctcttgg atgcagtaaa aattggcgac aagtctttgg
     1021 tgatgaaaag aaatattggc tagttccaat attttcaagc ttgggtgatg gttgcagttt
     1081 tccaactcgc cttgtgggga tggatccaga acaagcgtct attgcaaacc agggtgaata
     1141 catcagaagt attggctcaa atcaaccttt tcctatcaaa ccacttagtg agtcaaaaaa
     1201 ccgtttgttg gacagtgaat ctcagtggct agagaatgga gctgaggaag gaatcaccaa
     1261 atcagggaca aataaccatg ttacagtggc aatagaaaat tgagtactgc ctgttcataa
     1321 ctaaccattt gatgagtgaa aggtatataa aaacacattt tggactattt tcagttttat
     1381 ttggaagaaa atgatggatg gaatgaaata ctcgcagtat aacagaagat atatttttaa
     1441 aaggacgtgt ttgtacagtg atggctccac agaagcacta caaagcagaa agatgcctta
     1501 attcttagtg tccattgtgt aacattgcct cacagctcaa aagtgactta attcttagtg
     1561 tccattgtgt aacattgcct cacagctcaa aagtgactta attttccttt ggaaatgaca
     1621 cctgtcttac ctgttttaca atgctatcgt cacatgttaa catgctgtat gtatttttaa
     1681 catctaaatc acaacattag agttatttct agtatccgca taaattttca ccctaaaagt
     1741 acaaactaaa aaactgtctg tgataaagta tatctagggc aatgggggtt agccaaatca
     1801 ccgagtctta tgctgagtga agggaagaat acttcttttt tattagatgt ttactaattt
     1861 ataattactg ttttatactt ttcaacattt taataaagat ttttttaatt attggctata
     1921 aaataacact ca
//
