LOCUS       NM_001395115            2386 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus zinc finger DHHC-type palmitoyltransferase 13
            (Zdhhc13), mRNA.
ACCESSION   NM_001395115 XM_039084986
VERSION     NM_001395115.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Lemonidis,K., Gorleku,O.A., Sanchez-Perez,M.C., Grefen,C. and
            Chamberlain,L.H.
  TITLE     The Golgi S-acylation machinery comprises zDHHC enzymes with major
            differences in substrate affinity and S-acylation activity
  JOURNAL   Mol Biol Cell 25 (24), 3870-3883 (2014)
   PUBMED   25253725
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 2386)
  AUTHORS   Goytain,A., Hines,R.M. and Quamme,G.A.
  TITLE     Huntingtin-interacting proteins, HIP14 and HIP14L, mediate dual
            functions, palmitoyl acyltransferase and Mg2+ transport
  JOURNAL   J Biol Chem 283 (48), 33365-33374 (2008)
   PUBMED   18794299
REFERENCE   4  (bases 1 to 2386)
  AUTHORS   Ohno,Y., Kihara,A., Sano,T. and Igarashi,Y.
  TITLE     Intracellular localization and tissue-specific distribution of
            human and yeast DHHC cysteine-rich domain-containing proteins
  JOURNAL   Biochim Biophys Acta 1761 (4), 474-483 (2006)
   PUBMED   16647879
REFERENCE   5  (bases 1 to 2386)
  AUTHORS   Matsuda,A., Suzuki,Y., Honda,G., Muramatsu,S., Matsuzaki,O.,
            Nagano,Y., Doi,T., Shimotohno,K., Harada,T., Nishida,E., Hayashi,H.
            and Sugano,S.
  TITLE     Large-scale identification and characterization of human genes that
            activate NF-kappaB and MAPK signaling pathways
  JOURNAL   Oncogene 22 (21), 3307-3318 (2003)
   PUBMED   12761501
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 3, 2021 this sequence version replaced XM_039084986.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.703418.1,
                                           SRR26360181.1582732.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               JAXUCZ010000001.1  107623599-107623714
            117-262             JAXUCZ010000001.1  107630170-107630315
            263-385             JAXUCZ010000001.1  107633432-107633554
            386-463             JAXUCZ010000001.1  107635476-107635553
            464-608             JAXUCZ010000001.1  107636976-107637120
            609-673             JAXUCZ010000001.1  107639073-107639137
            674-836             JAXUCZ010000001.1  107639912-107640074
            837-962             JAXUCZ010000001.1  107640316-107640441
            963-1096            JAXUCZ010000001.1  107642130-107642263
            1097-1197           JAXUCZ010000001.1  107644920-107645020
            1198-1322           JAXUCZ010000001.1  107649969-107650093
            1323-1385           JAXUCZ010000001.1  107650917-107650979
            1386-1479           JAXUCZ010000001.1  107651642-107651735
            1480-1563           JAXUCZ010000001.1  107653103-107653186
            1564-1721           JAXUCZ010000001.1  107656978-107657135
            1722-1819           JAXUCZ010000001.1  107659182-107659279
            1820-2386           JAXUCZ010000001.1  107661612-107662178
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..2386
                     /gene="Zdhhc13"
                     /note="zinc finger DHHC-type palmitoyltransferase 13"
                     /db_xref="GeneID:365252"
                     /db_xref="RGD:1309736"
     exon            1..116
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..1958
                     /gene="Zdhhc13"
                     /EC_number="2.3.1.225"
                     /note="zinc finger, DHHC domain containing 13; probable
                     palmitoyltransferase ZDHHC13; zinc finger, DHHC-type
                     containing 13"
                     /codon_start=1
                     /product="palmitoyltransferase ZDHHC13"
                     /protein_id="NP_001382044.1"
                     /db_xref="GeneID:365252"
                     /db_xref="RGD:1309736"
                     /translation="MEGPGLGSQCRNHSHGSHVPGFGQHGICAHENKELAKAKEILPL
                     IEDSSNCDIVKATQYGIFERCKELVEAGYDVRQPDRENVSLLHWAAINNRLELVKFYI
                     SKGAVIDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLIDGEGFSSIHLAVLFQ
                     HMPIIAYLISKGQSVNMTDVNGQTPLMLSAYKVIGPEPTGFLLKFNPSLSAVDKTHQN
                     TPLHWAVAAGNVSAVDKLLEAGSSLDLRNAKGETPLDMAVQNKNQLIVHMLRTEAKMR
                     ANKKFRLWQWLHKCELFLLLVLSMISLWAVGYILNFNSDSWLLKGCLLVALLFLTSLF
                     PRFLVGYKNLVYLPTVFLLSSIFWIFMTWFILFFPDAAGSPFYFAFIFSIMAFLYFFY
                     KTWATDPGFTKASEEERKVNIVTLAETGSLDFRTFCTSCLIRKPLRSLHCHVCNSCVA
                     RFDQHCFWTGRCIGFGNHHHYIFFLLSLSMVCDWIIYGSFVYWSNHCATTFKEDGLWT
                     YLNQIVACSPWVLYIFMLAAFHFSWSTFLLINQLFQIAFLGLTSHERISLLKQSRHMK
                     QTLSLRKTPYNLGFMQNLADFFQCGCFGLVKPCIIDWTSQYTMVFHPAKEKVLRSV"
     exon            117..262
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            263..385
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            386..463
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            464..608
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            609..673
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            674..836
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            837..962
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1096
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1097..1197
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1322
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1385
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1479
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..1563
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1564..1721
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1722..1819
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1820..2386
                     /gene="Zdhhc13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagtgggc gagaggcggc tgaggcgtgc tccgagagcg gcggccgcca ctttgcgtag
       61 gagctgcggc cgggcgggta cggggtgtga tggaaggccc gggcctgggc tcgcagtgca
      121 ggaatcatag ccatggatcc catgttccag gatttggtca acacggcatc tgtgcacatg
      181 aaaacaaaga acttgcgaaa gcaaaagaaa ttcttcctct tatagaggac tccagtaact
      241 gtgacattgt caaagctaca caatacggaa tttttgaacg atgtaaagag ctggtagaag
      301 caggatatga tgtcagacaa ccagacagag aaaatgtgtc tcttcttcac tgggctgcca
      361 ttaacaacag gctagagctt gtaaagtttt atatttccaa aggtgctgtg atagatcagt
      421 tgggtggtga cttaaattca actcctcttc actgggccat ccgacaaggg catttgccta
      481 tggtcatctt gctactgcag catggtgcag accccactct gattgacgga gagggattca
      541 gcagcatcca tctcgcagtc ctgtttcagc acatgcccat catagcatac ctcatctcta
      601 agggacagag tgtgaatatg acagatgtca atggacagac acctctcatg ctgtcagctt
      661 acaaagtaat tgggccagaa ccaactggat ttcttttaaa gtttaatccc tctctcagtg
      721 ctgttgataa aacacatcag aacactccac ttcactgggc agttgctgca ggaaatgtta
      781 gtgcagttga taaacttttg gaagctggtt ctagcctgga cctccgaaat gctaagggag
      841 aaacacctct tgatatggct gtacaaaata aaaaccagct cattgttcac atgctaagaa
      901 cagaagccaa gatgagagcc aacaaaaagt ttcgactttg gcaatggcta cacaaatgtg
      961 agctcttcct gctgctggta ctctccatga tcagcctgtg ggctgttgga tacatcctga
     1021 acttcaattc agactcttgg cttttaaaag gatgtcttct agtagcattg ttgtttctga
     1081 catctttgtt tccaaggttt ttggttggct ataagaacct tgtgtactta ccaacagtct
     1141 ttctgctaag ttccattttt tggatattta tgacttggtt catcttattc tttcctgatg
     1201 cagcaggcag ccctttctac tttgctttta ttttcagcat catggccttt ctctattttt
     1261 tctacaagac ttgggcaact gatccaggct tcactaaggc ttccgaggaa gagaggaaag
     1321 tgaatatcgt cacccttgca gagactggct ctctggactt cagaacattt tgcacatcat
     1381 gtcttataag gaagccttta agatcactcc attgccacgt gtgcaactct tgtgtggctc
     1441 gctttgatca gcactgcttt tggactggac gctgcatagg ttttggcaac catcatcatt
     1501 acatcttctt cttgctttcc ctttccatgg tgtgtgactg gatcatatat ggatctttcg
     1561 tctactggtc aaatcattgt gccacaacgt tcaaggaaga cggactgtgg acctacctca
     1621 accagatagt ggcctgctct ccctgggttt tgtatatctt catgctcgca gctttccatt
     1681 tctcatggtc gacattttta ttaataaacc aactcttcca gatcgcattt ctgggcctaa
     1741 cttcacatga gagaatcagc ctcttaaagc aaagcaggca catgaaacag acattgtccc
     1801 tcaggaaaac accatacaac ctcggattca tgcagaacct ggcagatttc tttcagtgtg
     1861 gctgctttgg cttagtgaag ccctgcatca tagattggac atcccagtac accatggttt
     1921 tccacccagc caaagagaaa gtccttcgct ccgtatgaag aaaagcccct caaaatgcac
     1981 tcggacttgt ttttgtttat gctggtgctc tgagatctga aagtgaagtg agatattcag
     2041 ctccccacag tcaaagtctc tgggaatgaa gtcctcagca agagtgtacc ttctgtcaaa
     2101 cctggaaaga cagcctgtta ctgagcaatc tggcaacatc ttttaaaaaa atatgaaaat
     2161 attttcccca agaacatgag ttactttttt aaaaaatcat aatagtcact gattatggat
     2221 aaaagtattt tcaaatacta tattggcttt ttaaaaatag tactctttaa acttgtaatt
     2281 tttgataagt tatttgtctt tgttgtgtct ataaatatgt aaagaatatt taaatagatg
     2341 tatctgtttt gctttcacac ttaataaaaa cattttttat acttga
//
