LOCUS       NM_001039342            1469 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus zinc finger, DHHC-type containing 11 (Zdhhc11),
            transcript variant 1, mRNA.
ACCESSION   NM_001039342 XM_574292
VERSION     NM_001039342.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1469)
  AUTHORS   Liu,Y., Zhou,Q., Zhong,L., Lin,H., Hu,M.M., Zhou,Y., Shu,H.B. and
            Li,S.
  TITLE     ZDHHC11 modulates innate immune response to DNA virus by mediating
            MITA-IRF3 association
  JOURNAL   Cell Mol Immunol 15 (10), 907-916 (2018)
   PUBMED   29429998
REFERENCE   2  (bases 1 to 1469)
  AUTHORS   Oku,S., Takahashi,N., Fukata,Y. and Fukata,M.
  TITLE     In silico screening for palmitoyl substrates reveals a role for
            DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation in
            its targeting to Rab5-positive endosomes
  JOURNAL   J Biol Chem 288 (27), 19816-19829 (2013)
   PUBMED   23687301
  REMARK    GeneRIF: In silico screening for palmitoyl substrates reveals a
            role for DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin
            palmitoylation in its targeting to Rab5-positive endosomes.
REFERENCE   3  (bases 1 to 1469)
  AUTHORS   Ohno,Y., Kihara,A., Sano,T. and Igarashi,Y.
  TITLE     Intracellular localization and tissue-specific distribution of
            human and yeast DHHC cysteine-rich domain-containing proteins
  JOURNAL   Biochim Biophys Acta 1761 (4), 474-483 (2006)
   PUBMED   16647879
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 4, 2023 this sequence version replaced NM_001039342.2.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760434 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                JAXUCZ010000001.1  31155431-31155498   c
            69-305              JAXUCZ010000001.1  31153826-31154062   c
            306-484             JAXUCZ010000001.1  31145057-31145235   c
            485-586             JAXUCZ010000001.1  31144233-31144334   c
            587-711             JAXUCZ010000001.1  31141937-31142061   c
            712-867             JAXUCZ010000001.1  31139868-31140023   c
            868-980             JAXUCZ010000001.1  31134695-31134807   c
            981-1027            JAXUCZ010000001.1  31132140-31132186   c
            1028-1120           JAXUCZ010000001.1  31125781-31125873   c
            1121-1469           JAXUCZ010000001.1  31124900-31125248   c
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p11"
     gene            1..1469
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /note="zinc finger, DHHC-type containing 11"
                     /db_xref="GeneID:499000"
                     /db_xref="RGD:1564281"
     exon            1..68
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..1118
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /EC_number="2.3.1.225"
                     /note="isoform 1 is encoded by transcript variant 1;
                     DHHC-containing protein 10; membrane-associated DHHC11
                     zinc finger protein; probable palmitoyltransferase
                     ZDHHC11; zinc finger, DHHC domain containing 11"
                     /codon_start=1
                     /product="probable palmitoyltransferase ZDHHC11 isoform 1"
                     /protein_id="NP_001034431.2"
                     /db_xref="GeneID:499000"
                     /db_xref="RGD:1564281"
                     /translation="MKEMSTCGIGQNRVLPEAQENNVKKLLPRPLSRVNGWSPPLHSF
                     QAISWTTYLAMSIVTFGIFIPFLPTSWKYAANAVSFVLVMGGVFMFHLVVHLIAITID
                     PADTNVRLKKDYLEPVPTFDRSKHAHVIQNQYCHLCEVTVSKKAKHCSSCNKCVSGFD
                     HHCKWLNNCVGKRNYWFFFFSVASAAFGLLGVLIILLYIFIQYFVNPNGLRMDPLYKE
                     ISSENTWLLFLSLSPVPVKTPVVLSIAAMVLLLAIASFVLLGHLLVFHFYLISKKLST
                     FDYMMQTRFQKSPRPAEKKELPPRKKGNVSQEKSNNLTWPTSPTRPRVEPQRLLLSTL
                     SPQSNECFMAPAPKTPPQ"
     exon            69..305
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            306..484
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            485..586
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            587..711
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            712..867
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            868..980
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1027
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1120
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1469
                     /gene="Zdhhc11"
                     /gene_synonym="Zdhhc20; Znf399"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accactgttt aacatgtcag cactgagcaa gaagtgtctg acctgtgctg ctcaacctga
       61 tgaaagagat gagcacctgt ggcatcggcc agaaccgggt cctcccagaa gcccaggaaa
      121 acaatgtgaa gaaactgcta ccacgccctc tgtctagggt gaatggctgg tcaccacccc
      181 tccactcctt tcaggcaata tcctggacca cctacctggc catgtccatt gtcacctttg
      241 ggatcttcat cccctttctg ccaactagct ggaaatatgc tgccaatgct gtatcctttg
      301 tactagtgat gggtggggtg ttcatgttcc acctcgtcgt gcacttgatc gcaattacca
      361 tcgacccagc tgacaccaat gtccgactca aaaaggacta cttggagcct gtgccgacct
      421 tcgaccggtc caaacacgca catgtgattc agaaccagta ttgccacctg tgtgaggtta
      481 ccgtgagcaa aaaagccaaa cattgcagct cctgcaacaa atgtgtctct ggctttgacc
      541 accactgcaa atggctgaac aactgtgtgg gcaaaagaaa ctactggttc ttcttcttct
      601 ctgtggcctc agctgcattc gggcttcttg gtgtgttgat tatcttgttg tacatcttca
      661 tccagtactt tgtcaacccc aatgggcttc gcatggatcc tctatataaa gagatcagct
      721 ctgagaacac atggctgctg ttcctctcac tgtctcctgt gcctgtgaag acccccgtgg
      781 tcctttccat cgcggcgatg gtgctgctgc tagccattgc cagctttgtg ctgctcgggc
      841 acctgcttgt cttccacttc tacctgattt ctaagaaact gagcacattt gactacatga
      901 tgcagacccg attccagaag agtccacgcc cagcagagaa gaaagagcta cctcctcgga
      961 agaaggggaa cgtttcccag gaaaagagta acaacttgac ttggcctacg tccccaacca
     1021 ggcccagggt ggagccccag aggctcctgc tgtctactct ttcgccacag tcaaatgagt
     1081 gtttcatggc tccagctccc aagaccccac cacagtgaag gctagtggca aggatgagcc
     1141 ctctctcgca gtggaagtat caaggcgtca gcccgagatc atgaggagac cgtctactct
     1201 gtggtgcaag ctgctgctga gccgtgatct tcagtagaat atgtgtatta tgtgtatttt
     1261 ggacttaaga tattttcaat ttatgatgag ttcctcagaa tgcaaacccc gttgtcattc
     1321 aagaatcatc tacatagaag aatgttagca atgatagagt ctaggtgtta agtacatatg
     1381 cattttcact ttcaaatttt ctagatgttt gaaaattttc acaataaaat gttgaggtat
     1441 gacttggtaa aagtaaacat ggcaaaagt
//
