LOCUS       XM_039090107            1398 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger CW-type and PWWP domain
            containing 1-like 1 (Zcwpw1l1), mRNA.
ACCESSION   XM_039090107
VERSION     XM_039090107.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 5% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                JACYVU010000226.1  149520-149580       c
            62-141              JACYVU010000226.1  144129-144208       c
            142-142             "N"                1-1
            143-178             JACYVU010000226.1  144093-144128       c
            179-299             JACYVU010000226.1  143548-143668       c
            300-375             JACYVU010000226.1  142884-142959       c
            376-504             JACYVU010000226.1  142378-142506       c
            505-588             JACYVU010000226.1  141071-141154       c
            589-646             JACYVU010000226.1  140542-140599       c
            647-741             JACYVU010000226.1  140161-140255       c
            742-802             JACYVU010000226.1  139101-139161       c
            803-937             JACYVU010000226.1  138547-138681       c
            938-1398            JACYVU010000226.1  136022-136482       c
FEATURES             Location/Qualifiers
     source          1..1398
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1398
                     /gene="Zcwpw1l1"
                     /note="zinc finger CW-type and PWWP domain containing
                     1-like 1; The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 6 Proteins, and 81% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100910636"
                     /db_xref="RGD:6497217"
     CDS             1..1251
                     /gene="Zcwpw1l1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: zinc finger CW-type PWWP
                     domain protein 1-like"
                     /protein_id="XP_038946035.1"
                     /db_xref="GeneID:100910636"
                     /db_xref="RGD:6497217"
                     /translation="MWGRLFLHLQANGIKSKPQAGHCVIWVQCSSPKCEKWRQLRGDI
                     DPSXLPDDWSCDQNPDLNYNRCDIPEESWTGCESDVAYASYVPGSIVWAKQYGYPWWP
                     GMIECDPDLGEYVLFASHLDSLPSKYHVTFFGEAVSRAWIPVRMLKNFQELSSELARL
                     LSKLGTSVKKCKNKDSTQKLEAAIPMAHRAEQINIQEWVNLFGLQWSGHHIGEGKDLM
                     LCESNSPESCLEKEEKNSEEEKEEEEGKKDPTLPRPRPAKIQTKRPKSRGPVGGQDGT
                     PKKKTVKKSLVSESTVPPGPTLRGKEEQGNSDLDHPGPKKKFKAPENKASVNNLSEEK
                     EIKIVSKCPAPPAQHGVYTLGKDGLEPQVPLIQGATSFPPDDDGSSDLDLEQLMEDIG
                     EPEERGEMQQRGSSEEFLAALFEE"
ORIGIN      
        1 atgtggggca ggctgtttct tcatctacag gccaacggaa taaagtctaa accccaggca
       61 ggccactgtg tcatctgggt ccagtgttcc tctccaaagt gtgagaagtg gaggcagctc
      121 cgtggggaca ttgatccctc cnttctccca gatgactggt cttgtgacca gaatccagac
      181 ctgaattata accgctgtga tattcctgag gagagctgga cagggtgtga gagcgatgtg
      241 gcctatgcct cctacgttcc aggatccatt gtctgggcca agcagtacgg ttacccatgg
      301 tggccaggca tgatagaatg tgatcctgac ctgggggagt acgttctgtt tgcttctcat
      361 cttgattccc tgccgtctaa gtaccatgtg acatttttcg gagaagcggt ttctcgtgcg
      421 tggatcccag tccgtatgct gaagaatttc caggagctgt cttcggagct agctagactg
      481 ttgagcaaac ttgggacatc tgttaaaaaa tgcaagaaca aggactccac tcagaagctg
      541 gaggcagcca taccgatggc acacagggca gaacagatca atatccagga atgggttaac
      601 ttgtttggtt tacaatggag cggacatcac atcggggaag gaaaagattt gatgctctgt
      661 gagtccaaca gccctgagtc ttgtctggag aaagaggaga agaactctga ggaggagaag
      721 gaggaggaag aagggaagaa agacccaact ttgcctagac ccaggccagc taaaatacag
      781 acaaaaagac ccaagtcaag aggcccagta ggaggacaag atgggactcc aaagaagaag
      841 actgtgaaga aatctctggt cagtgaatcc acagtccctc ctggacctac actgagagga
      901 aaggaagaac aggggaattc agacctggac cacccaggcc ctaagaaaaa atttaaagct
      961 cctgaaaaca aggcttcagt caacaactta tctgaggaga aagaaattaa aattgtgtcc
     1021 aagtgccctg ccccaccagc tcagcatggg gtttatacat tgggaaagga tgggcttgag
     1081 ccccaggtgc ccctgataca gggtgcaaca agtttccctc ctgacgatga tggttccagt
     1141 gacctggact tggaacaact catggaagac attggagagc cagaagagag aggggagatg
     1201 cagcagaggg gcagctcgga ggagtttctg gcagccctct ttgaggaata gagtattgtg
     1261 gtccccctgc tgttgtctgc tgcagggaga gcatctccgt cctcctggtc agctgttaaa
     1321 tgttggtgtt gttgacctgt tccacagttc aaatcagagc tgtgtggcct gtattaataa
     1381 agcaggtctc tgagatta
//
