LOCUS       XM_039090660            6598 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger CCHC-type containing 2
            (Zcchc2), transcript variant X5, mRNA.
ACCESSION   XM_039090660
VERSION     XM_039090660.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6598
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6598
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /note="zinc finger CCHC-type containing 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 21 ESTs, 1 long SRA read, 1 Protein, and 98% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 157 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:304695"
                     /db_xref="RGD:1310626"
     CDS             1274..4696
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /codon_start=1
                     /product="zinc finger CCHC domain-containing protein 2
                     isoform X4"
                     /protein_id="XP_038946588.1"
                     /db_xref="GeneID:304695"
                     /db_xref="RGD:1310626"
                     /translation="MLRMKLPPKSTHPSEPPPDAEEPEADARPGAKAPPRRRRDCRPP
                     PPPPTGLPRGPPPPPPSPPRGLEPPVASGPTAGAGMPGGGGHAAALREQERVYEWFGL
                     VLGSAQRLEFLCGLLDLCNPLELRFLGSCLEDLARKDYHYLRDSEAKANGLSDPGSLA
                     DFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDAVLRSLRATRVEGSRGSVEDE
                     PGGDDEQDAEKDGPGPEGGGCAKLGTGGGLGFRAQEELLLLFTMASLHPAFSFHQRVT
                     LREHLERLRSALRVEPEDAEVEPSNFAGSRAQNDSACGDYIQSNETGLVEQAQIPQDG
                     LTVAPHRAQREAVHIEKIMLKGVQRRRADKYWEYTFKVNWSDLSVTTVTKTHQELQEF
                     LLKLPKEFSSESFDKTILKALNQGSLRREERRHPDLEPILRQLFSTSPQAFLQSHKVR
                     SFFRSISSESQHSFNVLQHTIIHKKHAGKSPAGNVATSCALLEGLTMQYAEQNGVVDW
                     RNQGCAAIQHSEHCVSSADQLSAEKRSLSSVNKKKGKPQVEKEKIKKTENRLSSRING
                     IRLSAPQHAHGSTVKDMNLDVGSGHDTCGETSSESYSSPSSPRHDGRESLESEEEKDR
                     DTDSNSEDSGNPSSARFAGHGSVTQTVSVQPPADTVSLGTENGNLLEAPLTSHKYPHI
                     PFMPTLPCVMHNGAQKSEVVIPSPKSADGKAVGVLVPNPVAISTMMESTNAAPVGILG
                     PAASGESEKHLELLASPLPIPSPFLPHSSAPALQLTLQSLKLQPPQGASENCPVNIPQ
                     QAATRLSIGSPNTALIPVHNPGAFPGSPVAATDPITKSASQVVGLNQMVPQIEGNTGT
                     VPQPNNVKVVLPAAGLSAAQPPASYTFPGSPLAASVLPTQNSTVLNTATSAQPASTGI
                     SPAQSTVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYISAVGNTNANSTIVPPQPLG
                     PCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRLPSFFTLPSICNGSYLNQAHQSNG
                     NQLPFFLPQTPYANGLVHDPVMGSQASYGMQQMAGFGRLYPVYPAPNVVANTSGSGPK
                     KNGSVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLPPSNDTLDSAD"
ORIGIN      
        1 tgttggtttg ctttttaaat ttatttttat agttgcgcta tacatatcac taaaagagag
       61 tcatttgggg gctggggttt ttcaaacctt aaagatgtaa tatcatttaa aaacctaaaa
      121 ccctgccaag acagtaatta attaaattgt tttaaaagag ttacaggaaa tccacaccag
      181 cactagaatt gcaaatgttc atggatagta actaaaaggt aactaataag tgattctgca
      241 aaccatagat ttggggcagg agggtgttct taaatttaac cttgcaagcc agaagcaacc
      301 atcaggccaa gcgcccctac caacagggtc cccacggccg gatctaaagc cagtctaaag
      361 cagcaccttg cagccagcct gggcaccggc gctcgccgcc ccagaccact ccacatcccg
      421 acctaactcc cggatctgcg ttccagcgtc cacaccaacg gtccaggtga agttttagaa
      481 cgtggtaatt atccccggtg gctgactttc gcggagtcca ctaggcggcg gggctgtgaa
      541 cccagggcgg tggctgactc gaagatggtc tgcagacaga tctctcaaga aaaagtaagt
      601 cgatttccct cctcccacgt gaacctcgcc cacttctgcc gctcccggcc gagctcacct
      661 cgccgtggtc ccaaagtccc aaactcacgt cctcattctg ctggaactca ccaagcatta
      721 ggaccgcgcg ggacctgcca aagccttgcg gcctagcagg aggtgggcgt ggcctctcgg
      781 agagggcggc tcccggcagg ggagggaggc ggacgaggag cgcgcgtcac tctagctctg
      841 gacgttgatt ggctggggtg cggtgcgcgg agcccgccag cgtctccgcc cagcccctct
      901 gctcctcctc ctcgccaagc cgctctgcca gcgctggctc gagagggaac cgctcaggcc
      961 gtcaccgcca acccggtgcg gacgcggaga agccggaagg aggacgcgct tgtcgacttg
     1021 ctcctcccgc accggactcc ccagcgggca cggagcccag gggaggagcc gccgcgggca
     1081 cgccccgcct ccggccggga cgaagctgcc ggccggccac cgcctccctt ccccggtcgg
     1141 cgagacccgc ccccggcccg ccccggcggc atggaggggc aacgttcttg acggccgtgc
     1201 cgccgcccgg gcgctcggct cctcccgccg cccccgctcc ctcgctcgca tgtccgcacc
     1261 gccttagctg aggatgctga ggatgaagct gccaccgaag tccacgcacc ccagcgagcc
     1321 gccgcccgac gcggaggagc ccgaggcgga cgcgcggccg ggcgcaaagg cgccgccgcg
     1381 ccgccgccgc gactgccgcc cgccgccgcc gccgcccacg ggcctgccac gggggccccc
     1441 gccgccgccg ccgtcgccgc cccgggggct cgagccgcct gttgctagcg ggccgacggc
     1501 gggagcgggc atgccgggcg gcggcgggca cgcggcggcg ctgcgcgaac aggagcgggt
     1561 gtatgagtgg ttcgggctgg tgctgggctc ggcgcagcgc ctggagttct tgtgcgggct
     1621 gctggacctg tgcaacccgc tggagctgcg ctttctcggc tcgtgcctgg aggacttggc
     1681 gcgcaaggac taccactacc tgcgcgactc agaggctaag gccaacggcc tctcggaccc
     1741 ggggtcgctg gccgacttcc gagagcctgc ggtgcgctcg cgcctcatcg tttacctagc
     1801 gctgctgggc tcggagaaca gggaggccgc cggccgcctg caccgcctcc tgccccaggt
     1861 ggacgcggtg ctcaggagcc tccgcgcgac tcgagtcgag ggctcgcggg gcagcgtgga
     1921 ggacgagccg ggtggcgatg acgagcagga cgcggagaag gacggccccg gcccggaagg
     1981 cggcggctgc gccaagctcg ggactggagg cgggctcggc ttcagggccc aggaggaact
     2041 gctgctgctc ttcaccatgg cttccctgca cccggctttc tccttccacc agcgggtcac
     2101 cctgagggag cacctggaga ggctccgcag cgcactccgg gtggaaccgg aggacgcgga
     2161 ggtggagccg agcaactttg ccggctccag ggcccagaac gattctgctt gtggtgacta
     2221 tatacagagt aatgagactg gtttagtaga acaagcccaa atacctcaag atggactcac
     2281 tgtggcccct caccgagctc agcgagaagc tgtccacatt gagaagataa tgttgaaagg
     2341 agtgcagagg agaagggctg acaagtactg ggagtacact ttcaaagtaa attggtctga
     2401 cctttcagtc acaacagtaa caaaaaccca ccaagagcta caggaatttc tactgaagct
     2461 tccaaaggag ttctcttctg agagttttga caagaccatc ttaaaagccc tgaatcaggg
     2521 ttctctaagg agggaagagc ggcgccaccc tgacctggag cccatcctaa ggcagctgtt
     2581 ttcaacctca ccccaggcct tccttcagag tcacaaagta cgcagctttt ttcgatcaat
     2641 atcatcggag tctcaacata gcttcaatgt gttacagcac accattatcc acaagaaaca
     2701 cgctgggaaa agccccgctg ggaatgttgc tacaagctgt gctctattgg aggggctcac
     2761 catgcagtat gcagaacaaa atggagttgt ggattggagg aaccaaggct gtgcagccat
     2821 ccagcactca gagcactgtg tatcctctgc tgaccaactc tctgctgaaa aacggagctt
     2881 gtcttcagta aataagaaga aagggaagcc acaagtagaa aaggagaaaa taaagaaaac
     2941 tgagaacaga ttgagcagta gaataaacgg gattagactc tcggctcccc agcatgctca
     3001 tggcagcact gtgaaagata tgaatttgga cgttggatct ggacatgaca catgtggaga
     3061 aacatcttca gagagttaca gctctccgtc tagtccacgg catgatggaa gagagagttt
     3121 ggaaagtgaa gaagagaagg acagagatac agacagcaat tctgaagact ctgggaatcc
     3181 atcgtcagcc aggtttgcag gccatggctc tgtcacccag accgtctctg tccagccgcc
     3241 tgctgacacc gtctcactgg gaactgagaa tgggaacctt ttggaagctc cgttgacctc
     3301 acacaagtac ccacatattc ccttcatgcc aactctaccc tgtgtcatgc acaacggtgc
     3361 ccagaagtca gaagttgtca ttccgtcgcc caaatctgca gacggcaaag ccgtaggggt
     3421 gcttgtccct aaccctgtgg ctatttctac aatgatggag tccacaaatg cggccccggt
     3481 tggcatccta ggcccagcag cttctgggga gtcagagaag caccttgaat tgttagcttc
     3541 ccctttacct atcccgtcac ccttcctccc acacagcagt gctcctgctt tgcagctgac
     3601 gctacagagt ctaaaattac aaccaccaca gggagcgtct gagaattgcc cagttaatat
     3661 cccacaacaa gcagccacaa ggctgagcat cggatcacca aacactgcct tgattcctgt
     3721 ccataaccca ggggctttcc caggatctcc tgtggctgcc acggatccca tcacaaaatc
     3781 tgcatcccaa gtggtaggac taaatcaaat ggtgcctcag attgagggaa acacggggac
     3841 agtccctcag ccgaacaatg tgaaggtagt tcttccagca gctggcctct cagctgcaca
     3901 gccaccagct tcctacacct ttccaggctc accccttgcc gccagtgtgc tacccaccca
     3961 gaattccact gtgctcaaca cagccacttc tgcccagcca gcaagtacag gcatcagtcc
     4021 agcccaatcc acagttcctc ctgctgttcc tactcacacc ccaggccctg ccccaagccc
     4081 cagccctgcc ttgacacaca gtactgcaca gagtgacagc acgtcttaca tcagtgctgt
     4141 ggggaacacg aatgctaaca gcaccatagt gccaccacag cctctgggtc cctgtggttc
     4201 ttgtgggcga aggtgcagct gtgggaccaa tggaaacctt cagctaaata gttactatta
     4261 tcccaacccc atgcctggac caatgtaccg actcccatca ttcttcactc tgccatccat
     4321 ttgcaatggc agctacctca accaagcaca tcagagcaat ggaaaccaac ttcctttttt
     4381 tctgcctcag actccatatg caaatggact ggtgcatgac ccagtcatgg ggagccaagc
     4441 cagctatggt atgcagcaga tggcaggatt tgggagattg taccccgtat atccagcacc
     4501 taatgtagtt gccaacacca gtggttctgg gcccaagaag aacgggagtg tctcttgtta
     4561 caattgtggt gtaagcggac actatgcaca agactgtaag cagtcatcca tggaggccaa
     4621 tcagcaaggc acttacagac tgagatacgc acctcccctc cccccttcta atgatacgtt
     4681 ggattctgca gactgaccga gtaaagcttg cctgcttaat gcactcacgt gtggggagtc
     4741 atgggtgtgg aggggaggaa aggaaaggta ttttgtctct ttgtctgtac atttcctcaa
     4801 tttctatgca gttgggagtt ttcatttctc ttttgcctgt gtccacataa gaaagagcgc
     4861 aacgcgctga gcctctggtc tcctgtgccg acagccggct ggtctcctgt gccgacagcc
     4921 ggctgctctc ctgtgccgac agccggcttt catgtttgac actcgtaact tcaatttcag
     4981 acaaactcaa acggaaaccg tcgatgtgtg ctttctttac actgaacact tgctgtgtgc
     5041 agtgtttact gaatctttaa actgtgtatc tgaccttatt tgtttccaca acactggtaa
     5101 cagtcgtatg gttttcttcc tctggctttc ctcactttga ccctgagccc atgtctcttc
     5161 cagccaccct tctccctagc ctgcagcgag ggtgctcagc gcgtccttgt cacacttctg
     5221 taacctgctc tgagtctgaa ccaagggcaa cacgtgtcac cgtaaatttt agacatcaga
     5281 gtcccaagaa gtatgtacat atgtcacaaa agcaccacgt aaatacacat atgcagcacc
     5341 tgtccaaata acctgagaac aaatgggaga gaggaagcca gactcgggaa ggcacacacg
     5401 ggacagacag gctttccttg agtgaaaaca gtgtttcctt ccatcacact tctgagagca
     5461 ccccggcggt gtgaacaccc cggtggtgtg aatgctgcgc tctgtgggcc tgtgtctgtg
     5521 atgaggccac ctcggcctgc ccagacactg ctgactgaag acaccctgtc ggacagcagc
     5581 tgttgcactg tcacactggg gtatagtgtg tgtgctttgt tgcatctgac agaagctatg
     5641 gctttctaca aaagtcaggt acctgctccc aaacaaagtc acttttaaaa ccgtttacca
     5701 ctatgcttga tacaatgtga aagactgggt ggagtgtgtt gagatggtgt taatcatgtc
     5761 actgtcatgt cactaagtct aatgctgctg gcttttttca gtttgttttc tttgttttgt
     5821 ttttaagcca atctgtgtac taagttgctt ccaggtaatt tttgttttga tttcctgacg
     5881 tgcactgagg atatctggga ggttggctgt gtcctaccat ccattgcaag cttgtggggt
     5941 agcaggaagg tagcaggctt tccgtgcccc ggtacagagt agacgtgagt gacttcgttg
     6001 tggggaatag agtcggtgtg cagcagaggc actgaaatgt tgggtctggg ttctgaaacc
     6061 tgacattgtg agacaaagaa aaaacttgaa gcaaaaagaa gctagttcca cacgtcaaaa
     6121 gtagtgttta tatttatagc gccaatgtat gttctgaaac tttcaggggt aggagaccgg
     6181 gagagatggg gggagtgtga cggggtagac gaaagcttta atttagaaag aaaagttcaa
     6241 gtaaaggaaa ttattttgat taaatatatt ttatttgatc tgggtatttt tggaccgcat
     6301 tattaaatcg ttgagctgca gttgagttgt tgaggggaga gtattgacca gaccagcctt
     6361 gtacaggtgc attgtgactc acattgtgcc cggtgtcctg tgtggggctt attttatgat
     6421 ttcaatactg tactgtacac aggaggtgtg ttaccttctc cttatttgta tgtttaccat
     6481 agactttgat atctgagatg ttatgtactg gaaaggccac ttatatttct agaacagatt
     6541 ggattttatg caatcttttc cttgaattaa cagcaataaa aaaagaaaaa caacctaa
//
