LOCUS       NM_001122677            5794 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger CCHC-type containing 2 (Zcchc2),
            transcript variant 1, mRNA.
ACCESSION   NM_001122677 XM_001056466 XM_001063680
VERSION     NM_001122677.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5794)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001122677.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on partial transcripts and orthologous
            alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760389,
                              SAMN06621351 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on computational evidence
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1306              JAXUCZ010000013.1  22634171-22635476
            1307-1418           JAXUCZ010000013.1  22646236-22646347
            1419-1495           JAXUCZ010000013.1  22649662-22649738
            1496-1567           JAXUCZ010000013.1  22651591-22651662
            1568-1680           JAXUCZ010000013.1  22657953-22658065
            1681-1775           JAXUCZ010000013.1  22662322-22662416
            1776-1859           JAXUCZ010000013.1  22664802-22664885
            1860-1917           JAXUCZ010000013.1  22666381-22666438
            1918-2053           JAXUCZ010000013.1  22668140-22668275
            2054-2118           JAXUCZ010000013.1  22669644-22669708
            2119-2213           JAXUCZ010000013.1  22670061-22670155
            2214-2342           JAXUCZ010000013.1  22674251-22674379
            2343-3824           JAXUCZ010000013.1  22676577-22678058
            3825-5794           JAXUCZ010000013.1  22679031-22681000
FEATURES             Location/Qualifiers
     source          1..5794
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13p11"
     gene            1..5794
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /note="zinc finger CCHC-type containing 2"
                     /db_xref="GeneID:304695"
                     /db_xref="RGD:1310626"
     exon            1..1306
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     CDS             383..3892
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger CCHC domain-containing protein 2; tumor necrosis
                     factor receptor superfamily, member 11a"
                     /codon_start=1
                     /product="zinc finger CCHC domain-containing protein 2
                     isoform 1"
                     /protein_id="NP_001116149.2"
                     /db_xref="GeneID:304695"
                     /db_xref="RGD:1310626"
                     /translation="MLRMKLPPKSTHPSEPPPDAEEPEADARPGAKAPPRRRRDCRPP
                     PPPPTGLPRGPPPPPPSPPRGLEPPVASGPTAGAGMPGGGGHAAALREQERVYEWFGL
                     VLGSAQRLEFLCGLLDLCNPLELRFLGSCLEDLARKDYHYLRDSEAKANGLSDPGSLA
                     DFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDAVLRSLRATRVEGSRGSVEDE
                     PGGDDEQDAEKDGPGPEGGGCAKLGTGGGLGFRAQEELLLLFTMASLHPAFSFHQRVT
                     LREHLERLRSALRVEPEDAEVEPSNFAGSRAQNDSACGDYIQSNETGLVEQAQIPQDG
                     LTVAPHRAQREAVHIEKIMLKGVQRRRADKYWEYTFKVNWSDLSVTTVTKTHQELQEF
                     LLKLPKEFSSESFDKTILKALNQGSLRREERRHPDLEPILRQLFSTSPQAFLQSHKVR
                     SFFRSISSESQHSFNNLQSSLKTSKILEHLKEDSSEASSQEEDVLQHTIIHKKHAGKS
                     PAGNSVATSCALLEGLTMQYAEQNGVVDWRNQGCAAIQHSEHCVSSADQLSAEKRSLS
                     SVNKKKGKPQVEKEKIKKTENRLSSRINGIRLSAPQHAHGSTVKDMNLDVGSGHDTCG
                     ETSSESYSSPSSPRHDGRESLESEEEKDRDTDSNSEDSGNPSSARFAGHGSVTQTVSV
                     QPPADTVSLGTENGNLLEAPLTSHKYPHIPFMPTLPCVMHNGAQKSEVVIPSPKSADG
                     KAVGVLVPNPVAISTMMESTNAAPVGILGPAASGESEKHLELLASPLPIPSPFLPHSS
                     APALQLTLQSLKLQPPQGASENCPVNIPQQAATRLSIGSPNTALIPVHNPGAFPGSPV
                     AATDPITKSASQVVGLNQMVPQIEGNTGTVPQPNNVKVVLPAAGLSAAQPPASYTFPG
                     SPLAASVLPTQNSTVLNTATSAQPASTGISPAQSTVPPAVPTHTPGPAPSPSPALTHS
                     TAQSDSTSYISAVGNTNANSTIVPPQPLGPCGSCGRRCSCGTNGNLQLNSYYYPNPMP
                     GPMYRLPSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQASYG
                     MQQMAGFGRLYPVYPAPNVVANTSGSGPKKNGSVSCYNCGVSGHYAQDCKQSSMEANQ
                     QGTYRLRYAPPLPPSNDTLDSAD"
     exon            1307..1418
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1495
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1496..1567
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1568..1680
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1681..1775
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1859
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1860..1917
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1918..2053
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            2054..2118
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            2119..2213
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            2214..2342
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            2343..3824
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            3825..5794
                     /gene="Zcchc2"
                     /gene_synonym="Tnfrsf11a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcccctctg ctcctcctcc tcgccaagcc gctctgccag cgctggctcg agagggaacc
       61 gctcaggccg tcaccgccaa cccggtgcgg acgcggagaa gccggaagga ggacgcgctt
      121 gtcgacttgc tcctcccgca ccggactccc cagcgggcac ggagcccagg ggaggagccg
      181 ccgcgggcac gccccgcctc cggccgggac gaagctgccg gccggccacc gcctcccttc
      241 cccggtcggc gagacccgcc cccggcccgc cccggcggca tggaggggca acgttcttga
      301 cggccgtgcc gccgcccggg cgctcggctc ctcccgccgc ccccgctccc tcgctcgcat
      361 gtccgcaccg ccttagctga ggatgctgag gatgaagctg ccaccgaagt ccacgcaccc
      421 cagcgagccg ccgcccgacg cggaggagcc cgaggcggac gcgcggccgg gcgcaaaggc
      481 gccgccgcgc cgccgccgcg actgccgccc gccgccgccg ccgcccacgg gcctgccacg
      541 ggggcccccg ccgccgccgc cgtcgccgcc ccgggggctc gagccgcctg ttgctagcgg
      601 gccgacggcg ggagcgggca tgccgggcgg cggcgggcac gcggcggcgc tgcgcgaaca
      661 ggagcgggtg tatgagtggt tcgggctggt gctgggctcg gcgcagcgcc tggagttctt
      721 gtgcgggctg ctggacctgt gcaacccgct ggagctgcgc tttctcggct cgtgcctgga
      781 ggacttggcg cgcaaggact accactacct gcgcgactca gaggctaagg ccaacggcct
      841 ctcggacccg gggtcgctgg ccgacttccg agagcctgcg gtgcgctcgc gcctcatcgt
      901 ttacctagcg ctgctgggct cggagaacag ggaggccgcc ggccgcctgc accgcctcct
      961 gccccaggtg gacgcggtgc tcaggagcct ccgcgcgact cgagtcgagg gctcgcgggg
     1021 cagcgtggag gacgagccgg gtggcgatga cgagcaggac gcggagaagg acggccccgg
     1081 cccggaaggc ggcggctgcg ccaagctcgg gactggaggc gggctcggct tcagggccca
     1141 ggaggaactg ctgctgctct tcaccatggc ttccctgcac ccggctttct ccttccacca
     1201 gcgggtcacc ctgagggagc acctggagag gctccgcagc gcactccggg tggaaccgga
     1261 ggacgcggag gtggagccga gcaactttgc cggctccagg gcccagaacg attctgcttg
     1321 tggtgactat atacagagta atgagactgg tttagtagaa caagcccaaa tacctcaaga
     1381 tggactcact gtggcccctc accgagctca gcgagaagct gtccacattg agaagataat
     1441 gttgaaagga gtgcagagga gaagggctga caagtactgg gagtacactt tcaaagtaaa
     1501 ttggtctgac ctttcagtca caacagtaac aaaaacccac caagagctac aggaatttct
     1561 actgaagctt ccaaaggagt tctcttctga gagttttgac aagaccatct taaaagccct
     1621 gaatcagggt tctctaagga gggaagagcg gcgccaccct gacctggagc ccatcctaag
     1681 gcagctgttt tcaacctcac cccaggcctt ccttcagagt cacaaagtac gcagcttttt
     1741 tcgatcaata tcatcggagt ctcaacatag cttcaataac ttacagtcct ctctgaagac
     1801 ttctaagata ttagaacact taaaagaaga cagctcagaa gcttcaagtc aagaagaaga
     1861 tgtgttacag cacaccatta tccacaagaa acacgctggg aaaagccccg ctgggaacag
     1921 tgttgctaca agctgtgctc tattggaggg gctcaccatg cagtatgcag aacaaaatgg
     1981 agttgtggat tggaggaacc aaggctgtgc agccatccag cactcagagc actgtgtatc
     2041 ctctgctgac caactctctg ctgaaaaacg gagcttgtct tcagtaaata agaagaaagg
     2101 gaagccacaa gtagaaaagg agaaaataaa gaaaactgag aacagattga gcagtagaat
     2161 aaacgggatt agactctcgg ctccccagca tgctcatggc agcactgtga aagatatgaa
     2221 tttggacgtt ggatctggac atgacacatg tggagaaaca tcttcagaga gttacagctc
     2281 tccgtctagt ccacggcatg atggaagaga gagtttggaa agtgaagaag agaaggacag
     2341 agatacagac agcaattctg aagactctgg gaatccatcg tcagccaggt ttgcaggcca
     2401 tggctctgtc acccagaccg tctctgtcca gccgcctgct gacaccgtct cactgggaac
     2461 tgagaatggg aaccttttgg aagctccgtt gacctcacac aagtacccac atattccctt
     2521 catgccaact ctaccctgtg tcatgcacaa cggtgcccag aagtcagaag ttgtcattcc
     2581 gtcgcccaaa tctgcagacg gcaaagccgt aggggtgctt gtccctaacc ctgtggctat
     2641 ttctacaatg atggagtcca caaatgcggc cccggttggc atcctaggcc cagcagcttc
     2701 tggggagtca gagaagcacc ttgaattgtt agcttcccct ttacctatcc cgtcaccctt
     2761 cctcccacac agcagtgctc ctgctttgca gctgacgcta cagagtctaa aattacaacc
     2821 accacaggga gcgtctgaga attgcccagt taatatccca caacaagcag ccacaaggct
     2881 gagcatcgga tcaccaaaca ctgccttgat tcctgtccat aacccagggg ctttcccagg
     2941 atctcctgtg gctgccacgg atcccatcac aaaatctgca tcccaagtgg taggactaaa
     3001 tcaaatggtg cctcagattg agggaaacac ggggacagtc cctcagccga acaatgtgaa
     3061 ggtagttctt ccagcagctg gcctctcagc tgcacagcca ccagcttcct acacctttcc
     3121 aggctcaccc cttgccgcca gtgtgctacc cacccagaat tccactgtgc tcaacacagc
     3181 cacttctgcc cagccagcaa gtacaggcat cagtccagcc caatccacag ttcctcctgc
     3241 tgttcctact cacaccccag gccctgcccc aagccccagc cctgccttga cacacagtac
     3301 tgcacagagt gacagcacgt cttacatcag tgctgtgggg aacacgaatg ctaacagcac
     3361 catagtgcca ccacagcctc tgggtccctg tggttcttgt gggcgaaggt gcagctgtgg
     3421 gaccaatgga aaccttcagc taaatagtta ctattatccc aaccccatgc ctggaccaat
     3481 gtaccgactc ccatcattct tcactctgcc atccatttgc aatggcagct acctcaacca
     3541 agcacatcag agcaatggaa accaacttcc tttttttctg cctcagactc catatgcaaa
     3601 tggactggtg catgacccag tcatggggag ccaagccagc tatggtatgc agcagatggc
     3661 aggatttggg agattgtacc ccgtatatcc agcacctaat gtagttgcca acaccagtgg
     3721 ttctgggccc aagaagaacg ggagtgtctc ttgttacaat tgtggtgtaa gcggacacta
     3781 tgcacaagac tgtaagcagt catccatgga ggccaatcag caaggcactt acagactgag
     3841 atacgcacct cccctccccc cttctaatga tacgttggat tctgcagact gaccgagtaa
     3901 agcttgcctg cttaatgcac tcacgtgtgg ggagtcatgg gtgtggaggg gaggaaagga
     3961 aaggtatttt gtctctttgt ctgtacattt cctcaatttc tatgcagttg ggagttttca
     4021 tttctctttt gcctgtgtcc acataagaaa gagcgcaacg cgctgagcct ctggtctcct
     4081 gtgccgacag ccggctggtc tcctgtgccg acagccggct gctctcctgt gccgacagcc
     4141 ggctttcatg tttgacactc gtaacttcaa tttcagacaa actcaaacgg aaaccgtcga
     4201 tgtgtgcttt ctttacactg aacacttgct gtgtgcagtg tttactgaat ctttaaactg
     4261 tgtatctgac cttatttgtt tccacaacac tggtaacagt cgtatggttt tcttcctctg
     4321 gctttcctca ctttgaccct gagcccatgt ctcttccagc cacccttctc cctagcctgc
     4381 agcgagggtg ctcagcgcgt ccttgtcaca cttctgtaac ctgctctgag tctgaaccaa
     4441 gggcaacacg tgtcaccgta aattttagac atcagagtcc caagaagtat gtacatatgt
     4501 cacaaaagca ccacgtaaat acacatatgc agcacctgtc caaataacct gagaacaaat
     4561 gggagagagg aagccagact cgggaaggca cacacgggac agacaggctt tccttgagtg
     4621 aaaacagtgt ttccttccat cacacttctg agagcacccc ggcggtgtga acaccccggt
     4681 ggtgtgaatg ctgcgctctg tgggcctgtg tctgtgatga ggccacctcg gcctgcccag
     4741 acactgctga ctgaagacac cctgtcggac agcagctgtt gcactgtcac actggggtat
     4801 agtgtgtgtg ctttgttgca tctgacagaa gctatggctt tctacaaaag tcaggtacct
     4861 gctcccaaac aaagtcactt ttaaaaccgt ttaccactat gcttgataca atgtgaaaga
     4921 ctgggtggag tgtgttgaga tggtgttaat catgtcactg tcatgtcact aagtctaatg
     4981 ctgctggctt ttttcagttt gttttctttg ttttgttttt aagccaatct gtgtactaag
     5041 ttgcttccag gtaatttttg ttttgatttc ctgacgtgca ctgaggatat ctgggaggtt
     5101 ggctgtgtcc taccatccat tgcaagcttg tggggtagca ggaaggtagc aggctttccg
     5161 tgccccggta cagagtagac gtgagtgact tcgttgtggg gaatagagtc ggtgtgcagc
     5221 agaggcactg aaatgttggg tctgggttct gaaacctgac attgtgagac aaagaaaaaa
     5281 cttgaagcaa aaagaagcta gttccacacg tcaaaagtag tgtttatatt tatagcgcca
     5341 atgtatgttc tgaaactttc aggggtagga gaccgggaga gatgggggga gtgtgacggg
     5401 gtagacgaaa gctttaattt agaaagaaaa gttcaagtaa aggaaattat tttgattaaa
     5461 tatattttat ttgatctggg tatttttgga ccgcattatt aaatcgttga gctgcagttg
     5521 agttgttgag gggagagtat tgaccagacc agccttgtac aggtgcattg tgactcacat
     5581 tgtgcccggt gtcctgtgtg gggcttattt tatgatttca atactgtact gtacacagga
     5641 ggtgtgttac cttctcctta tttgtatgtt taccatagac tttgatatct gagatgttat
     5701 gtactggaaa ggccacttat atttctagaa cagattggat tttatgcaat cttttccttg
     5761 aattaacagc aataaaaaaa gaaaaacaac ctaa
//
