LOCUS       NM_001127293            1846 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus zinc finger, C3HC-type containing 1 (Zc3hc1),
            mRNA.
ACCESSION   NM_001127293 XM_001063052 XM_216113
VERSION     NM_001127293.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Ambrogio C, Voena C, Manazza AD, Piva R, Riera L, Barberis L, Costa
            C, Tarone G, Defilippi P, Hirsch E, Boeri Erba E, Mohammed S,
            Jensen ON, Palestro G, Inghirami G and Chiarle R.
  TITLE     p130Cas mediates the transforming properties of the anaplastic
            lymphoma kinase
  JOURNAL   Blood 106 (12), 3907-3916 (2005)
   PUBMED   16105984
  REMARK    Erratum:[Blood. 2009 Sep 24;114(13):2851]
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Ouyang T, Bai RY, Bassermann F, von Klitzing C, Klumpen S, Miething
            C, Morris SW, Peschel C and Duyster J.
  TITLE     Identification and characterization of a nuclear interacting
            partner of anaplastic lymphoma kinase (NIPA)
  JOURNAL   J Biol Chem 278 (32), 30028-30036 (2003)
   PUBMED   12748172
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166834.1.
            
            On or before May 11, 2008 this sequence version replaced
            XM_216113.4, XM_001063052.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166834.1, SRR8487230.135755.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132263 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..1846
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /note="zinc finger, C3HC-type containing 1"
                     /db_xref="GeneID:296957"
                     /db_xref="RGD:1561099"
     exon            1..172
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..1532
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /note="nuclear-interacting partner of ALK; zinc finger,
                     C3HC-type 1"
                     /codon_start=1
                     /product="zinc finger C3HC-type protein 1"
                     /protein_id="NP_001120765.1"
                     /db_xref="GeneID:296957"
                     /db_xref="RGD:1561099"
                     /translation="MAASCEGQLFAAGIEKTWGAVVRSPEGTPQKVRQLIDEGIVPEE
                     GGTEPKDTSATFQSVDGSPQAEQPPLESTSKEAFFHRVETFSSLKWAGKPPELSPLIC
                     AKYGWVTVECDMLKCSSCQAFLCASLQPTFDFGRYKERCAELKKSLCSAHEKFCFWPD
                     SPSPDRFGMLPLSEPAVLVSEFLDRFQSLCHLDLQLPSLRPEDLTTMCLTEDKLSALL
                     HLVEDELDFQIDDRKTTSKLGSDIQVHATACVLSLCGWACSSLEPTQLSLITCYQCMR
                     KVGLWGFQQMESSMTDLEASLGLTSSPIPGAEGRPEHFPLVPESPRRMMTRSQDAAVS
                     PSSEQSEKSPGPIVSRTRSWESSSPVDRPELEAASPTTRSRPVTRSMGTGDSAGLEVP
                     SSPHRRAKRPRLCSSSSSDTSPRSFFDPTSQHRDWCPWVNITLVKETKENGKTEVEAC
                     TPAEPGWKAVMAILLAHKHSNQPAETDSMSLSEKSRKVFRIFRQWESLCSS"
     exon            173..284
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            285..435
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            436..519
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            520..647
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            648..802
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            803..1043
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..1256
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1463
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
     exon            1464..1821
                     /gene="Zc3hc1"
                     /gene_synonym="RGD1561099"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaacacaac tccggaacgg accaagatgg cggcttcctg tgaggggcag ctgtttgccg
       61 cgggtattga aaagacttgg ggtgcagtcg ttcgttcccc tgaagggaca ccccagaaag
      121 ttcggcagct gatagatgaa ggaattgtcc cggaagaggg gggcacagaa ccaaaggaca
      181 catctgccac attccagtca gtcgatgggt cgcctcaagc agaacagcct ccactggaat
      241 ctacaagcaa agaagccttt tttcacagag tggagacctt ctcttctttg aaatgggcag
      301 ggaagccccc tgagctgtct ccacttatct gcgcaaaata cggttgggtt acagttgaat
      361 gtgacatgct caagtgctcc agctgccaag ctttcctctg tgccagtttg cagcccactt
      421 ttgactttgg cagatataag gagcgatgtg ctgagctcaa gaaatccttg tgcagtgccc
      481 atgagaagtt ctgtttttgg ccagacagcc cctctccaga tagatttggg atgttgccat
      541 tgagtgagcc tgctgttctt gtcagtgagt tcctggaccg gtttcaaagc ctttgccatt
      601 tggacctcca gcttccttcc ctgaggccag aggacttgac aactatgtgc ttgacagaag
      661 acaagctcag tgctctgctg cacctggtgg aagatgagct cgatttccaa atcgatgaca
      721 gaaagactac aagcaaatta ggctcagaca tccaagtcca cgccaccgcc tgtgttctct
      781 ctctgtgtgg ctgggcatgt agttcattgg agcctacaca gctctccctg ataacgtgtt
      841 accagtgtat gaggaaggtc ggtctctggg gctttcagca gatggaatcg tccatgacag
      901 atctggaggc ttcccttggt ttgacaagct cccccattcc aggtgcggag ggtcggcctg
      961 agcacttccc tctggtgcca gaatctccta ggcggatgat gacccgaagc caagatgccg
     1021 ccgtttctcc aagctctgag cagtctgaaa aaagtcctgg tccgattgtt tcccgaaccc
     1081 ggagttggga gtcttccagt cctgttgacc ggcctgagct agaggcagcc agtcctacca
     1141 ccaggagccg cccagtgacc cgaagcatgg gaaccggaga ttctgctggc ttagaagttc
     1201 cctcgagccc tcaccggaga gctaagcgac ctcgcctttg ttcttccagc agctcggaca
     1261 cctctccaag aagcttcttt gatcccacct ctcagcatag agattggtgc ccttgggtga
     1321 atatcacact ggtcaaagaa accaaggaga atgggaaaac ggaagtggaa gcctgtaccc
     1381 cagcagagcc aggctggaag gcagtgatgg ccatcctgct ggcccacaag cattctaacc
     1441 agccagctga gaccgactcc atgagtctct ctgaaaaatc aaggaaagtg ttccgaatat
     1501 tccggcagtg ggagtcttta tgctcatcct gaaaatgctg cagacagaac tgttgagggc
     1561 gactttttga aaaacagtca gctgacgctg cttttcttca ttctggttga attgcaagcg
     1621 caaaggcctg ccatctgcat ggcaaagagg ggacccaatt gccatgtggg atgtggacag
     1681 ggtaagatac agcaggccca gttctgtcgg gactgcaggg ctatgaacca gccacaagac
     1741 ttgagggttt ggttcaggca gtgttctgag cgtgaggctc aggagtgtga cagtatttgt
     1801 taataaagtg tttgctaagg taaaaaaaaa aaaaaaaaaa aaaaaa
//
