LOCUS       NM_001012090            1561 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger CCCH type containing 8 (Zc3h8), mRNA.
ACCESSION   NM_001012090 XM_230591
VERSION     NM_001012090.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Hu,D., Smith,E.R., Garruss,A.S., Mohaghegh,N., Varberg,J.M.,
            Lin,C., Jackson,J., Gao,X., Saraf,A., Florens,L., Washburn,M.P.,
            Eissenberg,J.C. and Shilatifard,A.
  TITLE     The little elongation complex functions at initiation and
            elongation phases of snRNA gene transcription
  JOURNAL   Mol Cell 51 (4), 493-505 (2013)
   PUBMED   23932780
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1561)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1561)
  AUTHORS   Hwang,E.S. and Ho,I.C.
  TITLE     Regulation of thymocyte homeostasis by Fliz1
  JOURNAL   Immunology 106 (4), 464-469 (2002)
   PUBMED   12153508
REFERENCE   5  (bases 1 to 1561)
  AUTHORS   Hwang,E.S., Choi,A. and Ho,I.C.
  TITLE     Transcriptional regulation of GATA-3 by an intronic regulatory
            region and fetal liver zinc finger protein 1
  JOURNAL   J Immunol 169 (1), 248-253 (2002)
   PUBMED   12077251
REFERENCE   6  (bases 1 to 1561)
  AUTHORS   Dahm,K., Nielsen,P.J. and Muller,A.M.
  TITLE     Transcripts of Fliz1, a nuclear zinc finger protein, are expressed
            in discrete foci of the murine fetal liver
  JOURNAL   Genomics 73 (2), 194-202 (2001)
   PUBMED   11318609
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079122.1.
            
            On Feb 11, 2005 this sequence version replaced XM_230591.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079122.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..1561
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /note="zinc finger CCCH type containing 8"
                     /db_xref="GeneID:311414"
                     /db_xref="RGD:1310458"
     exon            1..155
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..996
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /note="zinc finger CCCH type domain containing 8"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 8"
                     /protein_id="NP_001012090.1"
                     /db_xref="GeneID:311414"
                     /db_xref="RGD:1310458"
                     /translation="MDFENLFSKPPNPALGKKPAADPEERIDETDGTEVEEAQTENVK
                     RKVKRDCEPIPKKFKHLGHAGTPPKSLPRKKSRSKDYDPYSDGETCSQESEDNFDKEL
                     QQYIQAKEMASVAPPSLLPEESVKKAGTGDTQQTAKQKNKKSKAGLKKVKQKKMKRKW
                     LGTGNKGSNALLKIGGSQGKADGPEEKQPRVRMSQGFINQHTVERKGKQVCKYFLERK
                     CIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLHNEYPCKFYHTGTKCYQGD
                     HCNFSHAPLTAETQELLAKVLDTDKKSCK"
     exon            156..249
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     exon            250..484
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     exon            485..618
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     exon            619..741
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     exon            742..853
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     exon            854..963
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1005
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1527
                     /gene="Zc3h8"
                     /gene_synonym="Zc3hdc8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctaggttc cttagccccg gctccggtgg ttgttcagta cctgctcggc gcggagaggg
       61 acggtccctg tctgagttat ggattttgaa aatctttttt caaagccccc caatccggcc
      121 ctcggcaaaa aaccggccgc cgaccctgag gaaagaattg atgagacaga tggtactgaa
      181 gttgaagagg cacagacaga gaacgtcaaa cggaaagtaa aacgggactg tgaaccaatt
      241 cccaagaagt ttaagcacct tgggcacgct ggaacaccac caaagagttt gccacgtaaa
      301 aaatcaagaa gtaaggacta cgacccctac agtgatggag agacatgcag tcaggaatca
      361 gaagataatt ttgacaaaga gcttcagcag tacatacaag ccaaagaaat ggccagcgtg
      421 gctccaccct cgctgcttcc tgaggagtct gtgaagaaag cagggacagg agatacccag
      481 cagactgcca aacaaaaaaa taaaaaatct aaagctggtc tcaagaaagt taaacagaag
      541 aaaatgaagc gaaagtggct tggcactgga aacaaagggt caaatgcctt gctgaagatt
      601 ggtggctccc aaggaaaggc tgatggccct gaagagaagc agccacgtgt gaggatgagt
      661 caaggcttta tcaaccagca cacggtggaa cgcaaaggca agcaagtctg caaatacttc
      721 ctagaaagga agtgtattaa gggagaccag tgtaagtttg accatgatgc agagatagag
      781 aagaaaaagg agatgtgtaa gtattatgtt caaggatatt gtaccaaagg tgaaaactgc
      841 ctgtatttac ataatgaata cccttgcaag ttttatcaca caggaacaaa atgttatcag
      901 ggcgatcact gtaatttttc tcatgccccg ctgactgctg aaacacaaga actattggct
      961 aaagttttgg atactgacaa gaagtcctgt aaatagacta aaaagcatgt aaaggacgaa
     1021 tctattcctg ttcaggactt ttgaagcctg gtgatttgga atagttccta aggttcctcg
     1081 gctaatgcgc cttcctgtgt cgtggtgatg gtgtgcagct cccgttcgac acgtacagtg
     1141 gtggatctag tgctcacaga aggatggttc tgcactggac aggagggacg catgtgcatg
     1201 ctggctggag atggatactg cggtgcccta ggctgcagaa gtctcctcag ttgagagtta
     1261 cgattgagca agcacaaaat aggcaaaggg aggttaagtg aggatgggag aaataatggg
     1321 aaggatgatg acaggactgc taggggacga cataggggtc ataaataagc cacacctcta
     1381 catgtcatta aatactttgc acaatgtttt taacaataat tcagagttcc actatatggt
     1441 ttagcataga atgtggttct gtgatctttt taaaaaacaa tttcctgttg gatatttgtt
     1501 tctaattaaa gtgggataat atctcttaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1561 a
//
