LOCUS       NM_001108262            3757 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus zinc finger CCCH type containing 7 A (Zc3h7a),
            mRNA.
ACCESSION   NM_001108262 XM_001076011 XM_001076069 XM_001076095 XM_008767489
            XM_340742
VERSION     NM_001108262.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Treiber,T., Treiber,N., Plessmann,U., Harlander,S., Daiss,J.L.,
            Eichner,N., Lehmann,G., Schall,K., Urlaub,H. and Meister,G.
  TITLE     A Compendium of RNA-Binding Proteins that Regulate MicroRNA
            Biogenesis
  JOURNAL   Mol Cell 66 (2), 270-284 (2017)
   PUBMED   28431233
REFERENCE   2  (bases 1 to 3757)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3757)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Apr 2, 2021 this sequence version replaced
            XM_008767489.3, NM_001108262.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.26859.1,
                                           SRR26360172.1511515.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               JAXUCZ010000010.1  4980176-4980285
            111-211             JAXUCZ010000010.1  4992129-4992229
            212-251             JAXUCZ010000010.1  4993735-4993774
            252-449             JAXUCZ010000010.1  4995447-4995644
            450-608             JAXUCZ010000010.1  4997090-4997248
            609-689             JAXUCZ010000010.1  4997459-4997539
            690-728             JAXUCZ010000010.1  4997621-4997659
            729-762             JAXUCZ010000010.1  4999628-4999661
            763-1043            JAXUCZ010000010.1  4999892-5000172
            1044-1251           JAXUCZ010000010.1  5003753-5003960
            1252-1316           JAXUCZ010000010.1  5005015-5005079
            1317-1503           JAXUCZ010000010.1  5005605-5005791
            1504-1665           JAXUCZ010000010.1  5006190-5006351
            1666-1862           JAXUCZ010000010.1  5007843-5008039
            1863-1963           JAXUCZ010000010.1  5008670-5008770
            1964-2145           JAXUCZ010000010.1  5009651-5009832
            2146-2222           JAXUCZ010000010.1  5010816-5010892
            2223-2356           JAXUCZ010000010.1  5011449-5011582
            2357-2462           JAXUCZ010000010.1  5011950-5012055
            2463-2571           JAXUCZ010000010.1  5015087-5015195
            2572-2705           JAXUCZ010000010.1  5015784-5015917
            2706-2869           JAXUCZ010000010.1  5017260-5017423
            2870-3757           JAXUCZ010000010.1  5018750-5019637
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q11"
     gene            1..3757
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /note="zinc finger CCCH type containing 7 A"
                     /db_xref="GeneID:360466"
                     /db_xref="RGD:1311225"
     exon            1..110
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            111..211
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     CDS             144..3059
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /note="zinc finger CCCH type domain containing 7; zinc
                     finger CCCH-type containing 7A"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 7A"
                     /protein_id="NP_001101732.2"
                     /db_xref="GeneID:360466"
                     /db_xref="RGD:1311225"
                     /translation="MSSVSEERRKRQHSIKDGLQFIQSPLSYPGTQEQYAVYLHALVR
                     NLFNEGNDVYRECDWSGSLLQYSEALNIASYAKSEEILIPKEIIEKLQINRIACYSNM
                     GLHDKVLEDCNAVLSVNASNCKALYRKAKALSDLRRYREAYDVVAKCSLAVPQDEHVI
                     KLTQELAQKLGFKIRKAYVRAELSLKAVPGDGAPKAVNHSVEDIEPDLLTPRQEALSV
                     VSLPTSSFSHVIGSELASVPIMPVTSVLQLQVDESPLPSTVFANGGKIPFTISEAFLD
                     DDIVLGDEIDALLDSAPETNDAVMSSTLVRGPLPTASAAPGFPFRAPSLLGTLPIGAR
                     YAPEPSFAECFPPLTSPLEDFYSSLNAFSVTESTRDLSTSTAREGTALNSSNSSLLLM
                     NGPGSLFASDNFLGITSQPSNDCGNLFGSVIAKPFSSGTPRHPLEGTHELRQACQICF
                     VKSGPKLMDFTYHANLDHKCKKDILIGRIKNVEDKSWKKIRPRPTKTNYEGPYYICKD
                     VAADDECRYSGHCTFAYCQEEIDVWTLERTGAFSREAFFGGNGKISLTVVKILQEHLG
                     EFTFLCEKCFDHKPRMISKRNKDNSTACSHPVTKHEFEDNKCLVHILREATVKYSKIR
                     SFHKQCQLDLCRHEVRYGCVREDECFYAHSLIELKVWIMQNERGISHDDIAQQSRQYW
                     RSLEASLPGLQVLGNQIMPGLLNMEIKFVCAQCLRNGQVTEPDRNRKYCSAKAQHSWT
                     KERRAMRAMSFERKKWMNIRPLPTKKQMPLQFDLCNHIANRKKCQYVGNCSFAHSPEE
                     REVWTYMKDNKIHDIEQFYELWLKNQKTEKSDETSSHCSKENGKQIHMPTDYAEVTVD
                     FHCWMCGKNCNSEKQWQDHISSEKHKEKVFHTEDDQYCWQHRFPTGYFSVCDRYMDGS
                     CTEGSSCKFAHGNAELHEWEERRKALQMKLQKARKDHLIAPNDNDFGKYSFLFKDLK"
     exon            212..251
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            252..449
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            450..608
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            609..689
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            690..728
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            729..762
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            763..1043
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..1251
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..1316
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1503
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1504..1665
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1666..1862
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1863..1963
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            1964..2145
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2146..2222
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2223..2356
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2357..2462
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2463..2571
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2572..2705
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2706..2869
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2870..3757
                     /gene="Zc3h7a"
                     /gene_synonym="Zc3hdc7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgctgcgg tgggtcgccc agggaagccg tgagactgag agctagagcg ggtgaacgca
       61 catcccgctg tcgcctccgc aacctccacg tccagagtgc cgccccgcag attgctcatt
      121 agcaagtgga tgtacagggt aacatgtcca gtgtgtcgga ggagagaaga aaaaggcagc
      181 acagcatcaa ggacggtcta cagttcatcc agtctccact gtcatatcca gggacccagg
      241 agcagtatgc ggtgtatttg catgctcttg tgagaaatct ttttaatgaa ggaaatgatg
      301 tttaccggga atgtgattgg agcggctctc tacttcagta ttcagaagct ctgaatatag
      361 caagttatgc aaagtctgaa gaaattttaa ttcctaaaga aatcattgaa aaacttcaga
      421 taaatcgtat tgcctgctat tctaatatgg gtctccatga taaagtttta gaagactgta
      481 acgctgtcct cagtgttaat gccagtaact gcaaggctct gtatcggaag gctaaggctc
      541 taagtgactt aaggcgctac agagaggcct atgatgtcgt ggcaaagtgc tccttagcgg
      601 tgcctcagga tgaacatgta ataaagctaa ctcaagaatt agctcagaaa ttgggattta
      661 aaataaggaa agcatatgtt agagctgagc tctcactgaa agcagttcct ggggacgggg
      721 ctcccaaggc tgtgaaccat tctgtggaag atattgaacc agatttgtta accccaaggc
      781 aagaagcact ttcggttgtc tcccttccca catccagttt ttctcatgtt attgggagtg
      841 agctggcctc ggttcctatt atgcctgtaa cttctgtttt acaactgcaa gtggatgaga
      901 gccctctgcc gtccacagtg tttgcaaatg gagggaagat ccccttcacc atatcagaag
      961 cttttctgga tgatgacatt gtccttgggg atgaaataga tgctcttctt gattctgccc
     1021 cagaaactaa cgatgctgtt atgtcctcca ccctggtccg aggacccctc ccgactgcca
     1081 gcgcagctcc aggcttcccc ttcagggcac catccctgct tggaaccttg cccattggtg
     1141 caaggtacgc tcctgagccc tcctttgcag agtgctttcc acctctgact tcacccttgg
     1201 aagacttcta ctcttcttta aatgcatttt cggtgactga gtccactcga gatctgtcca
     1261 cctcaactgc tagagaggga acagcgctta acagcagtaa ctcctccctt ttacttatga
     1321 atggaccagg tagtttgttt gcctctgaca attttctggg aattacaagt cagcctagca
     1381 atgactgtgg aaacttgttt ggaagtgtga tcgctaaacc attttcttca gggactccta
     1441 ggcatcccct tgaaggaacc cacgagctga ggcaagcttg ccagatctgc tttgtaaaat
     1501 caggccctaa gttaatggat ttcacatacc atgctaattt agatcataaa tgtaagaaag
     1561 atattttaat tggtaggata aaaaatgttg aagataaatc atggaaaaaa atacgtccaa
     1621 gaccaacaaa aacaaattat gaaggaccat attatatatg caaagatgtt gctgccgacg
     1681 atgaatgtcg atattcaggc cactgcacgt ttgcttattg ccaagaagag atagatgtgt
     1741 ggaccctgga aaggacaggg gccttcagtc gagaggcttt ctttggcggc aatggaaaga
     1801 tcagcctgac tgtggtcaaa atcctccagg agcaccttgg agagtttaca ttcctttgtg
     1861 agaaatgttt tgatcataaa cctagaatga taagtaaaag aaataaagat aactctactg
     1921 cctgttctca cccggtcaca aagcatgaat tcgaggacaa taagtgcctt gttcacattt
     1981 tgagagaggc cacagtaaaa tattccaaaa tacggtcttt tcataaacag tgtcagcttg
     2041 acttatgtcg acacgaagtc cgttatggct gcgtcaggga agatgagtgc ttctatgccc
     2101 acagtcttat tgaattgaaa gtttggataa tgcaaaatga aagaggtatc tcccatgatg
     2161 atattgctca acaatccaga cagtactgga gaagtttgga agcaagcctg cctggactgc
     2221 aggtacttgg taatcagatc atgcctggat tacttaacat ggagataaag tttgtctgtg
     2281 ctcagtgtct gagaaatggc caagttaccg aacccgacag gaacaggaaa tactgcagtg
     2341 ccaaagcaca gcactcgtgg accaaagaac gtcgtgcaat gagagcgatg tcttttgaac
     2401 gtaagaagtg gatgaacatc cgtcctctcc ccacaaagaa acaaatgcct ttacagtttg
     2461 atctatgcaa ccatattgct aatagaaaaa agtgtcagta tgttggcaac tgttcctttg
     2521 ctcatagtcc tgaggaacgg gaagtgtgga cttacatgaa ggataacaaa atacatgata
     2581 tagagcagtt ttatgaactc tggctgaaga accagaaaac tgaaaaaagt gatgagacat
     2641 ccagtcactg tagcaaagaa aacgggaagc agatccacat gccaacagac tatgcggaag
     2701 tcactgtgga cttccactgc tggatgtgtg ggaagaactg taacagtgag aagcagtggc
     2761 aagaccacat ctcctccgag aagcacaagg agaaggtttt ccacactgag gacgaccagt
     2821 actgctggca gcaccgcttc cccacagggt acttcagtgt ttgtgacagg tatatggatg
     2881 gctcctgcac agaaggaagc agctgtaaat ttgcacatgg aaatgctgaa cttcatgaat
     2941 gggaagagag aaggaaggcc cttcagatga aactccagaa agcacggaaa gatcatttaa
     3001 ttgccccaaa tgataatgac tttggaaaat atagtttttt gtttaaagat ttaaagtaat
     3061 atgctggctt ttatgtaacc caatcggagc actgaccaga aaaattgcag gtgttgaacg
     3121 gcgcatagca gaggagctgc agattttctg cttgatcagc atctatcgtt cctcctgagc
     3181 agcaaccata gtagatagga caggctgttt gacaggcctg gctaggctct gtgcagccac
     3241 tggcatcaga tggcggcgac ttgcttccag gttgcactct gttggataga agtttggctg
     3301 aggtgtgttg gggaagaggg taaggttcag gatgactcta agggaagaac catggccacg
     3361 agagaataat gtacactggg attggaatga gcgagggatg aaattccctc tgtgttttag
     3421 tggaatgaat gtatttaata aaataataaa gtctgctact tatctgtatg taggttgcta
     3481 aaaaggattt tcttaactca gatttttaag ccaaataacc atttagcact agggtctgtt
     3541 aaatgggtat tttctgtatt tgtatgtctc actgtgataa gggaactgat gatcatgcac
     3601 atcaagaata ttttaaaagt aatcagtgga cacaaatttt atttcttggt cttttgctgc
     3661 ttaaatgatg atttttgaaa gattaaactt gtactgctgg tattgtgtag cgtatggacc
     3721 gatattgctt gtaataaaag attttacata gagatga
//
