LOCUS       NM_001107772            5324 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus zinc finger CCCH type containing 6 (Zc3h6), mRNA.
ACCESSION   NM_001107772 XM_001081128 XM_006234998 XM_230592
VERSION     NM_001107772.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5324)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Dec 15, 2013 this sequence version replaced
            XM_006234998.1, XM_001081128.1, XM_230592.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5324
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..5324
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /note="zinc finger CCCH type containing 6"
                     /db_xref="GeneID:311415"
                     /db_xref="RGD:1311061"
     exon            1..409
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     CDS             378..3920
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /note="zinc finger CCCH type domain containing 6"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 6"
                     /protein_id="NP_001101242.1"
                     /db_xref="GeneID:311415"
                     /db_xref="RGD:1311061"
                     /translation="MTDSEHAGHDREDGELEDGEIDDAGFEETQDHEAKENEKQKNEK
                     AYRKSRKKHKKEREKKKSKRRKHEKHKHNSPSGDSSDYSLDSDVEHMQSSHKKRTSFY
                     RDYDVPFSQHRRISGSYRTSKKSQHNKKFNSKEYAESSFYSDDYFGNYSDDNFGNYSN
                     QEGEEDFSSQLKYYRQSQERSGSSFSKESGKKLRSRESPPGTEYRIKNFNVSHGHLLP
                     RKIRRKEHCGARVIKGPHVFSAVDDFQEYSKPGKKWKVMTQEFINQHTVEHKGKQICK
                     YFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMHSEFPCKFYHSGA
                     KCYQGDKCKFSHDDLTKETKKLLDKVLNADEELVNEDERELEELRKHGITPLPKPPPG
                     VGLLPTPSEHFPFSDPEDDFETDLSDDTKKIPSLFEIVVKPTVDLAHKIGKKPPAFYN
                     STSPPGPQYEESSHCPQHMYSSESSPGPGSNIPQGSESPVRHPGSPGHHPCIGPPGPP
                     MQENPPLLPGSSEVVGPHSQAGGLVQLDTLPSMGGAYHSPGFPGHVMKVPRESHSSTA
                     SLYQQMPSEVQLSADSECLQGSAEVYDDYYPQNAAHSFQPPDNSADEMWHEEFAQQQP
                     PGAHDSPHLGSGPDTSSTLTSHCPLPASGLPPAVQRALFIPLTQRYQEDEEPAGTQPH
                     RASSKEEDDTVNWYSSSEEEEGSGVKSILRTLQKQTGTLRNQQHPPTELSIPTDPRLA
                     KEKRKGNQVVDPRLRTVPRQDIRKPHESVPVDLRLVWDPRKFRGNGGAPGGSSATGAK
                     FDLRHTSAGANHKPKRRDDDDEDTERELREKAFLIPLDSSPGVVLQDPRSQLRQFSHI
                     KMDIILNKPNFAKHIVWAPEDLLPVPLPKPDPVSSINLPLPPLIADQRLSRLWNTKSD
                     HQGTLSLDPTSAAKARMSLTPREGCLEQSGDLHSSGGKLGDPRLQKNFDPRLHRLPNT
                     ESPQVAIKDSHSLRNALPLARWNPALSQPSTAAPVTVAPVTLPLYASKLSSDGLPPGT
                     PSSVLSGISLYDPRDKGSLSATELSTISSGENTENQKKSGVKNSDKNQPSPGEVILPQ
                     KTTADMKVPVDGPADVQTDVLSSADGVQAPAVHSLPIQALTGLIGPPYSDPRQAREPG
                     QASPTPDDDPSRETDDKSLKEVFKTFDPTASPFC"
     exon            410..590
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            591..710
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            711..978
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1115
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1232
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1344
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1454
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1455..1708
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1709..2211
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2212..2445
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2446..5324
                     /gene="Zc3h6"
                     /gene_synonym="Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctgtttcg ggtgccgcca tgttggtgag gagaaatcac cgttacggcc actgtccaaa
       61 tccccgcgtc gctgcacgcc gcccgccggc tcccacgcct cagcctccgg cggcgaatac
      121 agactagagc ggctgcgccg gcagcgcggg gccgttgccc agtctttgca gttagagccc
      181 catctctctg gcgtggttgt taatagactg gaaagtctgt gtctgtgtcg ctcactagta
      241 accgtgagtt tttaccactt cgtcacctgt cggcggcggc cgggaacagg tgcccgcagg
      301 cggcgcagcg gtcctccccg cgtcccgccg ccggcctcca gacctgccct ccagccccgc
      361 cccgttcttg accaaacatg acagactctg aacatgcagg gcacgacaga gaagatggag
      421 aattagaaga tggagaaata gatgatgcag gatttgaaga aacacaagat catgaagcaa
      481 aagagaatga aaagcagaaa aatgagaaag cctacagaaa atcaagaaaa aagcacaaga
      541 aggaaagaga aaagaaaaaa tccaaaagga ggaaacatga gaaacataag cataactctc
      601 catctggtga tagttccgac tatagcctgg attcagatgt tgaacatatg caaagttccc
      661 ataagaaaag aactagcttc tacagggatt atgatgttcc attttctcag catagacgta
      721 tatcaggaag ttacaggaca tcaaagaaga gtcaacataa caaaaaattt aacagtaaag
      781 aatatgctga gtccagtttc tacagtgatg actactttgg taactacagt gatgacaact
      841 ttggtaacta tagtaaccag gaaggagaag aagatttctc cagtcagctg aaatactatc
      901 gacaatccca ggagcgctca gggtcatcat tctctaaaga atcagggaag aaactgagaa
      961 gtagagaaag cccaccaggt actgaatatc ggattaaaaa ttttaatgtt agtcatggac
     1021 atcttttgcc gaggaaaatc agaagaaaag agcactgtgg ggcacgagtc attaaagggc
     1081 ctcatgtctt ttcagcagtg gatgactttc aagagtacag caaaccgggg aaaaagtgga
     1141 aagtcatgac tcaggagttt attaaccagc acacagtgga gcacaaaggg aaacagatct
     1201 gtaaatactt cctggaaggg agatgtatta agggagatca ttgtaaattt aatcatgatg
     1261 cagaattgga gaagaaaaag gaggtctgca aatattattt acagggatat tgtaccaaag
     1321 gagagaactg catttatatg catagtgaat ttccttgcaa gttctatcat agtggagcaa
     1381 agtgctacca aggagacaag tgtaagtttt ctcatgatga tctgactaaa gaaacaaaga
     1441 aacttttgga caaagtgctg aatgctgacg aagaacttgt aaacgaagac gaaagagaat
     1501 tagaagaact tagaaagcac ggcataactc ctctccccaa accaccccca ggagtcgggc
     1561 tcctcccaac cccatcagag cattttccct tttctgatcc tgaagacgat tttgagacag
     1621 atctttctga tgatacgaag aaaattccat ctctttttga aatagttgta aaacctactg
     1681 tggatttagc acataaaatt gggaagaaac caccagcatt ttacaacagt acctctccac
     1741 caggaccaca gtatgaggaa agcagtcact gtccacagca tatgtacagt tctgagtcaa
     1801 gtccaggtcc tggatctaat attcctcaag gaagtgagag tcctgtgaga cacccaggct
     1861 cccctggaca ccacccatgt ataggacctc ctggtccacc aatgcaagag aacccacctt
     1921 tgctacctgg ttcatctgaa gttgtaggcc ctcatagcca agctggaggg cttgttcagc
     1981 tggacacact accaagtatg ggtggagctt atcattcccc aggctttcca ggacacgtga
     2041 tgaaagtccc cagagagagt cacagctcta cagcttcatt gtaccagcaa atgcctagtg
     2101 aggtacagct cagtgccgac tctgagtgcc tgcaaggctc ggctgaagtt tacgatgatt
     2161 actacccaca gaatgctgca cacagctttc aaccacccga taactctgct gatgagatgt
     2221 ggcatgaaga atttgcacag cagcagcctc ccggtgctca tgactctcct caccttggga
     2281 gtgggcctga taccagcagc actttaacaa gtcactgccc tctgcctgct tcagggctcc
     2341 ctcctgcagt gcagagagct cttttcatcc cattgactca gagataccaa gaagatgaag
     2401 aaccagctgg cacccagcct catagagcat caagcaagga agaagacgac acagttaact
     2461 ggtattccag tagtgaagag gaagaaggaa gtggtgtcaa gtcaatactg aggacattac
     2521 agaaacaaac gggaactcta agaaatcagc aacaccctcc cacagagctc agcattccta
     2581 ctgatccaag acttgctaaa gagaaaagga aaggaaatca agtggttgac ccaagactcc
     2641 ggactgtccc aaggcaagat attagaaagc cgcatgagtc tgtcccagtg gatcttagac
     2701 ttgtgtggga tcccaggaaa ttcagaggga atggaggtgc tcctgggggc tcttcagcca
     2761 ctggagcaaa gtttgatttg cgtcatacaa gtgctggtgc aaatcacaaa cccaaaagaa
     2821 gagatgatga tgatgaagat acagaaagag aactgagaga aaaagccttc ttaatacctt
     2881 tggattcttc acctggcgta gtcctccagg atccaaggtc acagttaaga caattcagtc
     2941 acattaaaat ggacattatt ctaaacaaac ccaactttgc aaaacacatt gtgtgggctc
     3001 cagaagactt acttccagta cctttaccta aacctgatcc agtatcttca atcaatttac
     3061 ctctgccccc acttatagct gaccagaggc tcagtagatt atggaataca aaaagtgatc
     3121 atcagggtac cctttccctt gatccaactt cagcagccaa agccagaatg agtctaacac
     3181 ccagagaggg ctgcttagag cagtctggag atttacacag ttcaggaggt aaactaggag
     3241 atcctaggct gcaaaagaat tttgatccta ggcttcacag actgcccaat acagagtctc
     3301 ctcaagtggc cataaaggac tcgcattcat tgaggaatgc tctgccctta gccaggtgga
     3361 accctgcttt gtcacagccc tcaacagcag cacctgttac tgttgctcct gtgactcttc
     3421 ccttgtatgc ctccaaactc tcttcagatg gcctcccacc aggaactcca agttcagttc
     3481 tgagtggcat tagtttgtat gatcctaggg ataagggttc attgtctgca acagagctgt
     3541 caaccatttc ttcaggagaa aatacagaga accagaaaaa aagtggtgta aaaaatagtg
     3601 ataaaaacca gccttcccct ggagaagtga tccttccaca gaaaactact gcagacatga
     3661 aagtccctgt tgatgggccg gctgatgtgc agacagatgt cctcagcagt gctgatgggg
     3721 ttcaggcccc tgctgtgcac agtcttccta ttcaggcctt aacaggctta attggacctc
     3781 catacagtga tccgaggcag gcaagagagc caggacaggc aagccccacc ccagatgatg
     3841 atcctagtag agaaacagat gacaagtctc tgaaagaggt ttttaagacg tttgatccaa
     3901 ccgcatcacc gttttgttag ctgttgtgta actaagctgt tctcacgcta tcacagttct
     3961 ctgctttttt gtaacttgtt tacctcgata gtttatttat tttttaaatt ataaacattt
     4021 ttcagctgct agtatcagaa ccacatgaac ttatatcctc taaagtctgt ggtattttat
     4081 ataatatttt tataacttca agagactata gtatagaaaa acatgttagc tttagtaaaa
     4141 gtatttttat tgttaaaagt gaaccatcat gaactcaaca ctcagcctga gtatatgcca
     4201 gttgtctttc ttaatcattg tttaggttaa caattaccac ttttatatgg ttgtttagtt
     4261 tcaagcaata tgatatacat tacttttgag aatcagtatt ttaactagga tcctttctgt
     4321 cagcacaaaa ctgattagtg tgtaacgcca actgctacat aaaatgcaag gtgaaaacat
     4381 tcaaaaccat aattagctca gctcttattt cagggcatca atttattagc attggcaata
     4441 ctgtctgtgt acatgaagca cttgaatgtt gtatctttta aaagtatttt attgtacact
     4501 atcatagaag ctgaaggact ataaataaaa tgttttgcta tagtaaaaaa tttctaggtt
     4561 ctctaacaga acttttaaaa tttaagtttt cacattaaat agttatgagt ttattgctgt
     4621 atcacattgt gatatttatg tatttcagtg ttttgtcttt agcaaatagt ttttatctct
     4681 ttcaaatgat gttactgcaa tatttgtgct catcatgact gtggcaattt ttaacagaat
     4741 tttcaatgtg agcctgtagt aattattatg ctgataatgt tttaaatgtc tagattatat
     4801 atttttcttg catagcaaaa aaataaaaat aaaaaataca aagacaaaaa ctaccccact
     4861 gagatggcag gtatattcca ctgtatatgg ttccaataaa caacatttta gatctcacac
     4921 aactggttct ataacaggga tcacctatgt tttaattatt taatgtcccc atagtttaga
     4981 actctgacta gaaattgtat tatgcattct tgtgtattca ctgcagtgca taggtaaagg
     5041 tacctgtgtt tataatgtaa ctcaaactca gtgttacact ggtgcagtct cttgaaccgc
     5101 tggtgactgg tagtgtttgc tgagatggct ccagtaaatc attgaaaaag agaatttgtt
     5161 atgagacaaa ggaagcaaaa aggccagtcc ttggttagag agaactctca cagaagcaat
     5221 tttcacagtt cacaaaatgt ttttgtttct atttgttgtc taaaatggct ctggatagca
     5281 gggtagagtc aaagatactg tttaaagtca cataaataga gact
//
