LOCUS       XM_006228482            6144 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger CCCH-type containing 4
            (Zc3h4), transcript variant X1, mRNA.
ACCESSION   XM_006228482
VERSION     XM_006228482.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006228482.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6144
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6144
                     /gene="Zc3h4"
                     /note="zinc finger CCCH-type containing 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 34 ESTs, 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 180 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:678741"
                     /db_xref="RGD:1596943"
     CDS             91..4008
                     /gene="Zc3h4"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 4
                     isoform X1"
                     /protein_id="XP_006228544.1"
                     /db_xref="GeneID:678741"
                     /db_xref="RGD:1596943"
                     /translation="MARSRLGNHRGPLQTWVSALSPHFHLLFSLSPSQTLLCLLKEMP
                     PTFKDTGAAVWEDGELEEGELEDDGAEDIQDTPGGQERSRKEKGEKHHSDSDEEKSHR
                     RLKRKRKKEREKEKRRSKKRRKSKHKRHASSSDDFSDFSDDSDFSPSEKGHRKYRDYS
                     PPYVPSHQQYSSSHNTPLPKKSYSKIDSKGYSMYEDYENEQYGEYEGDEEEDMGKEDY
                     DDFTKELNQYRRAKEGSSRGRGSRGRGRGYRGRGSRGGSRGRGMGRGSRGRGRGSMGE
                     HPEDEEDLYDEEIEYGESEEPMGDDDYDEYSKELNQYRRSKDSRGRGLSRGRGRGSRG
                     GRGKGMGRGRGRGSRGGMSKGGMNDEDDFYDDDMGDGGGGSYRRSDHDKPHQQSDKKG
                     KVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKL
                     YHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQGINPLP
                     KPPPGVGLLPTPPRPPGPPAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMAMPAHEPLS
                     PQQLQQDMYNKKIPSLFEIVVRPTGQLAEKLGVRFPGPGGPSGPMGPGPNMGPPGPMG
                     GPMHPDMHPDMHPDMHPDMHPDMHPDMHPDMHPDMHPDMPMGPGMNPGPPMGPGGPPM
                     MPYGPGDSPHSGMMAPIPPAQNFYENFYPQQEGMEMEPGLVGDAEDYGHYEELPGQPG
                     EPLFPEHPLEPDSFPEGGPPGRPKAGAGVPDFLPSAQRALYLRIQQKQQEEERARRLA
                     ESSKQDRENEEGDTGNWYSSDEDEGGSSVTSILKTLRQQTSSRPQASVGEPSSSGLGD
                     PRLQKGHTTGGRLADPRLSRDPRLSRHAETSGGSGPGDSGPSDPRLARALPTSKTEGS
                     LHSSPACPSGSKGQPPAEEEEGERALREKAVTIPLDPLPGHPLRDPRSQLQQFSHIKK
                     DVTLSKPSFARTVLWNPEDLIPLPIPKQDVPPVPAALQSLPALDPRLHRSTPPGPPNT
                     RQQRPGSTDPSTSGSNLPDFELLSRILKTVNVNTPGQSEKPSDPRVRKTPTDPRLQKP
                     ADPGAASRAAKPCPTEASPPAASPSGDSPPATAPYDPRVLAAGGLGQGSSSGQSSVLS
                     GISLYDPRTPNAGGKTAELTSDTSAQPKGPEGNGKSSASKAKEPPFVRKSALEQPETG
                     KASTDGATATDRYNSYNRPRPKATAAPTAASSTPPPEGATTQPGVHNLPVPTLFGTVK
                     PTPKTGTGSPFAGNSPAREGEQDAGSLKDVFKGFDPTASPFCQ"
ORIGIN      
        1 gagagagaga gagagagaga gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
       61 agggggtagg atggcgaata cgctagacag atggctcgca gccgcctagg gaaccacaga
      121 ggaccccttc agacttgggt ctcagccctt tctccccact tccaccttct gttttccctt
      181 tctccttcac agaccctcct ttgcctttta aaagaaatgc cacccacatt caaagacaca
      241 ggtgcagcag tttgggaaga tggtgagttg gaagaaggtg aactggaaga tgatggggct
      301 gaggacatcc aggatacccc tggaggacaa gagaggagtc ggaaagaaaa gggggagaag
      361 caccacagcg actccgatga ggaaaagtct cataggaggc tgaaaaggaa gcggaagaag
      421 gaacgggaga aggagaagag gagatcaaag aaaaggcgga aatctaagca caaacgccat
      481 gcttcctcca gtgatgactt ctcagacttc tcagatgact cagatttcag ccccagtgag
      541 aagggtcacc gcaagtaccg ggactatagc cccccatacg tgccatccca ccagcaatat
      601 tcctcatcac acaacacacc cctgcccaag aagtcctact ccaagattga tagcaagggc
      661 tacagcatgt acgaggacta tgagaatgag cagtacgggg agtatgaggg ggacgaggaa
      721 gaggacatgg ggaaggaaga ctacgacgac ttcaccaaag agctgaacca gtaccggcgt
      781 gccaaggagg gcagcagccg gggcagaggt agccgaggcc gaggcagggg ctacaggggc
      841 cgcggaagcc gaggaggatc tcgaggccga ggcatgggca ggggcagcag aggccgaggc
      901 cgaggctcca tgggagagca cccagaggac gaagaggact tgtatgatga ggagatagag
      961 tatggcgaaa gcgaggagcc catgggagat gatgattatg atgaatattc caaggagcta
     1021 aaccagtacc gaaggtccaa ggacagccga ggtcgagggt taagtcgagg ccgaggccgg
     1081 ggttccagag gaggccgagg aaaagggatg ggccggggcc gaggtcgagg cagcagaggg
     1141 ggcatgagca agggcgggat gaatgacgag gatgacttct acgatgacga catgggcgat
     1201 ggtggcggcg gaagctaccg gcggagtgat catgacaagc cccaccaaca atctgacaag
     1261 aaaggcaaag tcatctgcaa gtacttcgtg gagggacgat gcacttgggg agaccactgc
     1321 aattttagcc acgacattga gctaccgaag aagcgagagt tgtgcaaatt ttacattacg
     1381 gggttctgtg cgcgtgctga gaactgcccc tacatgcacg gtgactttcc atgtaagtta
     1441 taccacacca ctggaaactg catcaatggt gacgactgca tgttctccca tgacccgctg
     1501 actgaagaga cacgagagct cctagataag atgttggctg atgatgcaga agcaggtgct
     1561 gaggatgaga aggaggtgga agagttgaag aagcagggca tcaacccctt gcctaagcca
     1621 cctcctggtg tggggctcct gcctactcct ccacggcccc ctggaccccc agcccccacc
     1681 tctcctaacg gcaggcccat gcaaggtggc cctcctcctc caccaccacc ccctccccca
     1741 cctcctgggc ctcctcaaat ggccatgcca gcacatgaac cgctgtcccc acagcagcta
     1801 cagcaggaca tgtacaacaa gaagatcccc tctttgtttg agattgtggt gcgacccaca
     1861 gggcagctag ctgagaaact gggcgtgagg ttccctggac ctggtggacc ctcagggcca
     1921 atgggtcctg gccccaacat gggaccccca gggccaatgg gggggcccat gcatcctgac
     1981 atgcacccag acatgcaccc tgatatgcac cccgacatgc accccgacat gcaccccgat
     2041 atgcaccccg acatgcaccc tgacatgcat cctgacatgc caatgggtcc tggcatgaac
     2101 cctggccctc ccatgggtcc tggtggcccc ccaatgatgc cctatggtcc tggagactcc
     2161 ccacactctg gaatgatggc tcctatcccg ccagcccaga acttctatga gaacttctac
     2221 ccgcagcaag agggcatgga aatggagccg ggtcttgttg gggatgcaga ggactacggg
     2281 cactacgaag agttgccggg gcagcctggg gagcccctct tccctgagca ccctctggag
     2341 cctgacagct ttcccgaggg agggccccca ggccggccga aggcaggcgc cggtgtaccc
     2401 gacttcttgc cctcggctca gagggccctg tacctgagga tccagcagaa gcagcaggag
     2461 gaggagagag cgaggaggct ggctgagagc agcaagcagg accgggagaa tgaggaaggt
     2521 gacactggaa actggtactc aagtgacgag gatgaagggg gaagcagtgt cacatctatc
     2581 ctcaagacat tgaggcaaca gacgtcaagc cgaccccagg cttcagttgg ggaaccaagc
     2641 agcagtgggc tgggggatcc ccggctccag aagggacaca ccacaggagg ccgactggct
     2701 gacccccgcc tcagtcggga cccaagactc agccgccatg cagagacttc aggagggtct
     2761 ggcccagggg attcagggcc ctctgaccct cggttagctc gtgctctgcc cacctccaag
     2821 actgaaggca gccttcattc cagccctgca tgccccagcg gttcaaaagg acagccccct
     2881 gcagaagagg aggaagggga gagggccttg cgtgagaagg cagtaaccat tcccctggac
     2941 cccctgcctg gacacccact tcgggaccct cgctctcagc tgcaacagtt cagccacatc
     3001 aagaaggatg tgaccctgag caagccgagc tttgctcgca cagtcctctg gaaccctgaa
     3061 gacctgatcc ccttgcccat ccccaagcag gacgtacccc cagtacctgc tgccctgcag
     3121 tccctacccg ccctagatcc taggctacac cgttccacac cccctggacc tcccaatacc
     3181 cggcagcagc gtccagggtc cacagatccc agcacctctg gctctaacct acctgacttt
     3241 gaactcctct ctcgaatcct caagactgtc aatgtcaaca cccctggcca gagtgaaaag
     3301 cccagtgatc ccagggtgcg gaagacccct actgacccca gattacagaa gccagcagat
     3361 cctggggcag cctcccgtgc agccaagccc tgtcctactg aagcatcgcc tcctgctgcc
     3421 agcccaagtg gggactcccc accagccacg gctccctatg acccccgagt actggcagct
     3481 ggtggcttgg gccagggcag cagcagtggg cagagcagtg tgctaagtgg catcagcttg
     3541 tatgacccaa ggactcccaa tgcaggtggc aaaactgcag agctaacttc cgacacaagt
     3601 gctcagccca agggtcctga gggcaatgga aagagctcag cctccaaggc aaaggagccc
     3661 ccgtttgtcc gaaagtctgc cctggagcag ccagagacag ggaaggccag cacagatggt
     3721 gccaccgcca cggacagata caatagctac aaccggcccc ggcctaaggc cacagcagcc
     3781 cccactgctg cctcatccac cccgccccct gagggggcca caacccaacc tggggtacac
     3841 aacctaccag tgcccactct ctttggaact gtaaagccaa cccccaaaac aggcacaggg
     3901 agcccatttg ctggcaacag ccctgcccgt gagggtgagc aggatgcggg ttccctgaag
     3961 gacgttttta aaggctttga ccccacagcc tcccccttct gccagtagtg ttagtggggg
     4021 ccagtgctcc tcccactcca ccaccctccc agggtgacat ttagggcagc ctccagagtt
     4081 atgggcggga ggtggggcag gcgggcaggg tgttctttct tcacattttt cttccccccc
     4141 cccccccccc cctttttttc tcctttttta aatagtactt ctttgagtca taaattgtat
     4201 ctaatcatct tggggtctgg tcagtgctgc aggctcctgg gctccctctg cccagtgagc
     4261 aacttatacc ctgcattgga cagtggcaag tacccggcct ggggctcccc tggagctgag
     4321 ggaagcatga ctgggaaagc actgaaggcc actcaccctg tgctgctgga agtttgtcag
     4381 aaccacatca catggtgtgg agctggtaca ggagtttcta gagccccggg gtcaactgtc
     4441 ctctctagca tgtagtctgt gtcagcttgc ttcaggacaa agcaatagtg aagtgagaga
     4501 aagggcctgg cgaagcccgg cccaaacctg ctcggcctat gcaccccgca ttctccgtcc
     4561 agggttagcc ctgaaagtag cagacaccct gcaaccctgc aggggaccct tgataagaca
     4621 gacctgtagg agcaggcctg gcaaggctgg gacagccccc tgaagcattc tccctcagta
     4681 ttacctaccc tgtgccactg gcctgactct cgagacagct caaggatccg tggtgtggcc
     4741 acctgccagg cccccaagga gaggccaaga gtggccctgg caaagtgtgt ctgctggttg
     4801 cttccacacc cttagccatg ttacctgtag agtaccagat agtgtttgct tcccctcccg
     4861 agctgacaga gctggatgtc agtgatctgt tgtggtgttg cattattgag tccttcccaa
     4921 aatgctgagg aaacagcagg tatccagctg gtgtgttggc cttttctagg aaagggatca
     4981 agccccttca ggtggggagg cccaaagtat ctgccataaa ccacatagtg aaggcatttc
     5041 cacagcctcc cccattaaca caccttaggg ctggccttgt ccaaagaatg agggtagtca
     5101 gagactcctg tgaccatgtc cctaaaattg gatcaggaaa ctgggtaaga cctgcagacc
     5161 tttctgcctc tcggtcacat gccaggccct acaggtctgc tttcttgcag cctgcctctt
     5221 ttatattggg tctattgacc caactgcttc cttcttgcta ataaggagac ctgacacaca
     5281 cagccagtgg attcccctcc acctcagggg aggggacagg ctcccatgtc ccatcccaca
     5341 ccaccctcat accctccaca ccccaaagga atcccttcaa aacagtttgg agcctgtagc
     5401 cagggtggga ggggcttgtg ccccacagcc tcacaaccct tggggtcagt gcaccaagat
     5461 caggttggtt ggtttgtctt gtgtttttta tttttgtttt attttcttaa acaatcatca
     5521 atgagatttg tctttgggcc ccagccctgg cctcatggcc aagactgggg ccatggtgag
     5581 cataggatag gaagagtaca gtgtggcagt gtttggatcc ccttcacccc tttggaaatt
     5641 ccctttttga aggccaggct tggtagtgcg cctgtcatcc cggcactcag gaggaggggc
     5701 aggaggatca caggttcaaa gccagcctgg tctatattag aaaaaagctg tccttttgct
     5761 aaagaaaaaa ttaaatgaat ttttaaggct gaaatctgtg ggtgaggtgg agtctggagc
     5821 cttcctccgg aacagttaac tgaaggccct catggaacaa ggacatccgc ttgaatcccc
     5881 acttgccgtc aggccacact cgtaaagaaa gattgttctc taaccaggat tgtaacaaac
     5941 gtgtaaatag tatttctgag ttgaaagtcg atggtgcaaa tatgtatata acgtactgta
     6001 tttttacaat gatcgtcgca tggctctccc gccccttttg tactcagtat ctgtcttcca
     6061 gaaacctcac ctgccttctc atgtggtctc ttaatccagt aattgtatta ctgccattaa
     6121 aggatgcagt tattttaaac agtc
//
