LOCUS       NM_001134865            3384 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger CCCH type containing 3 (Zc3h3), mRNA.
ACCESSION   NM_001134865 XM_235433
VERSION     NM_001134865.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3384)
  AUTHORS   Hurt,J.A., Obar,R.A., Zhai,B., Farny,N.G., Gygi,S.P. and
            Silver,P.A.
  TITLE     A conserved CCCH-type zinc finger protein regulates mRNA nuclear
            adenylation and export
  JOURNAL   J Cell Biol 185 (2), 265-277 (2009)
   PUBMED   19364924
REFERENCE   2  (bases 1 to 3384)
  AUTHORS   Collart,C., Remacle,J.E., Barabino,S., van Grunsven,L.A.,
            Nelles,L., Schellens,A., Van de Putte,T., Pype,S., Huylebroeck,D.
            and Verschueren,K.
  TITLE     Smicl is a novel Smad interacting protein and cleavage and
            polyadenylation specificity factor associated protein
  JOURNAL   Genes Cells 10 (9), 897-906 (2005)
   PUBMED   16115198
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Sep 10, 2008 this sequence version replaced XM_235433.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.20198.1,
                                           SRR26643293.41593.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000007.1  109406089-109406172 c
            85-1396             JAXUCZ010000007.1  109403429-109404740 c
            1397-1593           JAXUCZ010000007.1  109401710-109401906 c
            1594-1744           JAXUCZ010000007.1  109374165-109374315 c
            1745-1929           JAXUCZ010000007.1  109350424-109350608 c
            1930-1972           JAXUCZ010000007.1  109344556-109344598 c
            1973-2131           JAXUCZ010000007.1  109344320-109344478 c
            2132-2201           JAXUCZ010000007.1  109344157-109344226 c
            2202-2333           JAXUCZ010000007.1  109341695-109341826 c
            2334-2518           JAXUCZ010000007.1  109324546-109324730 c
            2519-2865           JAXUCZ010000007.1  109323614-109323960 c
            2866-3384           JAXUCZ010000007.1  109321423-109321941 c
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..3384
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /note="zinc finger CCCH type containing 3"
                     /db_xref="GeneID:300032"
                     /db_xref="RGD:1307276"
     exon            1..84
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..2897
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /note="zinc finger CCCH type domain containing 3"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 3"
                     /protein_id="NP_001128337.1"
                     /db_xref="GeneID:300032"
                     /db_xref="RGD:1307276"
                     /translation="MEEKEQLRRQIRLLQGLIDDYKTLHGNGPAHGSSSATRWQPPVF
                     QGGRTFGSRYSRPNRRGFSSHHGPSWRKKYSLVNQPLESSDPASDHALQASLREDSQH
                     PEPQPYVLERQVQLSPDQNMVIKIKPPSKTGSINVSGVQRGSLEDCDDPSWSDQRPQG
                     SEVEVPGGQLQPPRPGRTKMGYSVDDPLLVCQKEPGKPRVVKSVGRINDSSPEHRRTV
                     SESEIAIKAHFPSSVLPQRTGVALGRKVGLHSTSYSEQFIGDQKANIGHADRLASLGS
                     VVAPVRPATGTRQVREASLLVSCRTSKFRKNNYKWVAASQKSPRVTRRALSPRTTLES
                     VNKAAFGMGVKTEKSQHKVDPGARPEKLATPAKAGASPSKYKWKASSPSASSSSSFRW
                     QSEAGSKDHTSQLSPVLSRPPSGDRPAGVPSNSKPLFGESQLSAYKVKSRTKIIRRRG
                     NTSLPGDKKISPSAATTNKNHLTQRRRQALRGKSSPILRKTPQKGLMQVNRHRLCCVP
                     SSRTHLSSKEASNAHIRIPPSNKVIKTRYRIVKKTPSSSFGAPSFPSSIPSWRARRIS
                     LSRSLVLNRLRPTITGGGKAPPGSPRWRNKGYRCIGGVLYKVSANKLSKTSSRPSDSN
                     RALLRTGRLDPATTSSRSLASRAIQRSLAIIRQAKQKKEKKREYCMYYNRFGRCNRGE
                     CCPYIHDPEKVAVCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSYFLKGICSNSNCPY
                     SHVYVSRKAEVCGDFLKGYCPLGAKCKKKHTLLCPDFARRGVCPRGTQCQLLHRNQKR
                     HGRRTAAPPIPGPSDGTPRSKASAGHALRKPTTTPRPARQMSSGLASRTEAPASPPPS
                     PRVLASTSTLSSKATAASSPSSSPSTGSSTPSLDQEEAVSGTGGAGSGTGSGSLCKLP
                     SFISLHSSPSPGGQTGPQAPRSPRPKDSGKPLHIKPRL"
     exon            85..1396
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1397..1593
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1594..1744
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1745..1929
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1930..1972
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1973..2131
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2132..2201
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2202..2333
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2334..2518
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2519..2865
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2866..3384
                     /gene="Zc3h3"
                     /gene_synonym="Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgttgagggg gtctggctag gcgtcgcgga ctccggagat ggaggaaaag gagcagctgc
       61 ggcggcagat acgcctcctg cagggtctaa ttgacgacta taaaaccctc cacggcaatg
      121 gccctgccca tggctcctca tcagctactc ggtggcagcc acctgtgttc cagggtggca
      181 ggacctttgg ctcccgctac tcccgtccaa atcggagggg cttctcttca caccatggcc
      241 cttcatggcg caagaaatac tcccttgtga atcagcctct ggaatcttct gacccagcca
      301 gtgatcatgc tttgcaggca tccctccgtg aggatagcca gcatcctgaa ccccagccgt
      361 acgtcctgga gagacaggtc cagctcagtc cagatcagaa tatggtcatt aagatcaagc
      421 caccatcaaa gacagggtct atcaatgttt caggggtcca gcggggttcc ttggaagact
      481 gtgatgaccc ctcttggagt gaccaaagac cccaaggaag cgaggttgag gtccctggtg
      541 gacagctgca gcctccaagg ccaggaagaa ccaagatggg ttacagtgtg gacgaccccc
      601 tcttggtctg ccagaaggag cctggcaagc ctcgggtagt gaagtctgtg ggcagaatta
      661 atgacagctc tcctgagcac cgacggacag tcagtgaaag tgaaattgcc atcaaggcac
      721 acttcccatc ctctgtccta ccccaacgca ctggtgtggc tctgggccgg aaggtcggcc
      781 ttcattctac cagctattct gaacagttta ttggagacca aaaagcaaat attggccatg
      841 cagaccgact agcttccttg gggtcagtgg tggctccagt cagaccagca acgggaacca
      901 ggcaggtcag ggaggcctca ctgctagtgt cttgtcgaac cagcaagttt cggaaaaaca
      961 actacaaatg ggtagctgcc tcacaaaaga gcccccgggt cactcggaga gctctcagtc
     1021 ccagaacaac tctggagagt gtgaacaagg ccgctttcgg tatgggtgta aagaccgaga
     1081 agtcacagca taaggttgac ccaggggcga ggcctgagaa actggccaca ccagccaagg
     1141 ctggagcctc tcccagcaag tacaagtgga aggcttccag cccctcggcc tcctcttctt
     1201 cctctttccg ttggcagtct gaggctggca gcaaggacca tacttctcag ctctccccag
     1261 ttctatctag gcccccgtca ggggacagac cagcaggggt acccagcaac tcgaagcccc
     1321 tctttggaga gtcacagctc tcagcttaca aagtgaagag ccgaaccaag attatccgga
     1381 ggcggggcaa taccagcctt cctggggaca agaagatcag cccctcagct gccaccacca
     1441 acaaaaacca tcttacccag cgacggagac aggccctccg ggggaagagt agccccattc
     1501 taaggaagac tcctcagaag ggtctgatgc aggtcaacag gcatcggctg tgctgtgtgc
     1561 catccagccg gacccacctc tccagcaagg aagcttccaa tgcgcacata cggattccgc
     1621 cctccaataa ggtgatcaag acccgctacc gcattgtcaa gaagacccca agctcttcct
     1681 ttggtgctcc gtccttcccc tcatctatac cctcctggcg ggcccggcgc atctcgttat
     1741 caaggtctct agtgctgaac cgccttcgtc caacaatcac tgggggaggg aaagcaccac
     1801 ctggttcccc tcgatggcgt aacaaaggct accgatgcat tggaggggtt ctgtacaagg
     1861 tgtctgccaa caagctctcc aagacctcca gcaggcccag tgacagcaac agggccctcc
     1921 tccgaacagg acgcctggac cctgccacta ccagcagtcg ttccttggcc agccgggcca
     1981 tccagcggag tctggctatc atccggcagg cgaagcagaa gaaagagaag aaaagagagt
     2041 actgcatgta ttacaaccgt tttggcaggt gtaaccgtgg cgaatgctgc ccctacatcc
     2101 atgaccctga gaaggtggcc gtgtgcacca gatttgtccg aggcacgtgc aagaagacag
     2161 atgggtcctg ccctttctct catcatgtgt ccaaggaaaa gatgcctgtg tgctcctact
     2221 ttctgaaggg gatctgcagc aacagcaact gcccctacag ccacgtgtat gtgtcccgca
     2281 aggccgaagt ctgcggtgac ttcctcaaag gctattgccc actgggtgcg aagtgtaaga
     2341 agaagcacac actgctgtgt cctgactttg cccgcagggg tgtttgtccc cgtggcaccc
     2401 agtgccagct gcttcatcgt aaccagaagc gacatggccg gcggacagct gcacctccta
     2461 tcccagggcc cagtgatgga acccccagaa gcaaggcctc agccggccat gcactcagga
     2521 agcccactac tactccgcgc cctgccagac agatgtccag tggtctggct tccagaacgg
     2581 aggccccagc ctcccctccc ccctccccaa gggtattagc ctccacctct accctgtctt
     2641 caaaggccac tgctgcctcc tctccttcct cttctccctc cactggttcc tccacccctt
     2701 ccttggatca ggaagaagct gtctctggga caggcggggc aggctcagga acaggctctg
     2761 gcagcctctg caagctacca tcctttatct ccctgcattc ctctccaagc ccaggaggcc
     2821 agactgggcc ccaggccccc aggagccccc gcccgaagga ctcagggaag ccgctacaca
     2881 tcaaaccacg cctgtgaggc tccctgggga ccagcccgca cctacctcag accctcaccc
     2941 ctggagagaa tggaggctct acccaccact gctcctgagg agaagcagcc tgccactgag
     3001 cccagctggg gctaaaagca gggatacata gctcctccca tttggctcac agccgctgga
     3061 ggcctttgtg tgcccaggcc ttgttctccc tcaagccaag gccctgtccg ttccctgttc
     3121 ctctccttcc cctcttccct ttttcccctc ctcccctcca aggcacccag cctcactcta
     3181 ggacttgtcc ctggctcccc acccataagg atgccatgtg agttcatcct agcctgtctc
     3241 ctgtggtggt ggcagtggca gtagttgtag gactggtgtc cccaaccctc cctacccagg
     3301 actcctgccc agggaagagg ctactggcca ggcctctctg gtgggcattt tatgttcagc
     3361 aataaaggtt ttatcctgtg tcta
//
