LOCUS       NM_201416               3300 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus zinc finger CCCH-type containing 18 (Zc3h18),
            mRNA.
ACCESSION   NM_201416 XM_214700 XM_341706 XM_341707
VERSION     NM_201416.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Pabis,M., Neufeld,N., Steiner,M.C., Bojic,T., Shav-Tal,Y. and
            Neugebauer,K.M.
  TITLE     The nuclear cap-binding complex interacts with the U4/U6.U5
            tri-snRNP and promotes spliceosome assembly in mammalian cells
  JOURNAL   RNA 19 (8), 1054-1063 (2013)
   PUBMED   23793891
REFERENCE   2  (bases 1 to 3300)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3300)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY389807.1.
            
            [WARNING] On Oct 26, 2024 this sequence was replaced by
            NM_201416.2.
            
            On or before Jan 31, 2004 this sequence version replaced
            XM_341706.1, XM_214700.2, XM_341707.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY389807.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="W"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3300
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /note="zinc finger CCCH-type containing 18"
                     /db_xref="GeneID:292067"
                     /db_xref="RGD:1303257"
     CDS             1..2916
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /note="conserved nuclear protein Nhn1; nuclear protein
                     NHN1"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 18"
                     /protein_id="NP_958819.1"
                     /db_xref="GeneID:292067"
                     /db_xref="RGD:1303257"
                     /translation="MDVAESPELEPHSPDEEQPALSDDDILRESGSEQDLDGAGERAS
                     DLEEEENATRVQSQEEIHSDEEDQASEPKSQDQDSEAHELSRGPAGSPCEEGDDAEED
                     GTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKAGAEEEEEKGEGAPGE
                     EGKPDVQSVGEKEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRPT
                     CRFFMKDVVTPLSTLLPPIPNSIPLRGQVKGNCTWGMNCRFIHPGVNDKGNYSLITKA
                     EPFPPNGAPPLGPHPLMPANPWGGPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKA
                     TIRKEQEPDFEEKRFTVTIGEDDREFDKENEVFRDWNSRVPRDVRDTTLEPYADPYYD
                     YEIERFWRGGQYENFRVQYTEAEPYHNYRDRERERERENRQRERERDRERDRERERRQ
                     RERERERERERDKERQRRKEEWERERAKRDEKDRQHRDRDRDKDRDKDKEKPKPRSPQ
                     PPSRQAEPPKKETASVGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSAS
                     SASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRRSSFSGSRSRSRSFSSS
                     PSPSPTPSPHRPPVRTKGEPAPPPGKAGEKSIKKPAPPPAPPQATKTTAPAPEPAKPG
                     DLREARRKERQTRTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSS
                     SVHSVDSDDMYADLASPVSSASSRSPTPAQTKKERGKSKKEDGVREEKRKRDPSAQPP
                     KSSKAPAGGKASQQAAAPQQAAPGQPQQGSFVAHKEIKLTLLNKAAEKGSRKRYEPSD
                     KDRQSPPAKKANLSPDRGSRDRKSGGRMGSPKPERQRGQNAKAPAAPADRKRPLSPQS
                     KSSSKVTSVPGKATDTATAGTKSGKASTLSRREELLKQLKAVEDAIARKRAKIPGKV"
     exon            1..588
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            589..673
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            674..745
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            746..894
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            895..987
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1145
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1263
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1532
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1724
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1725..1850
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1851..1955
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1956..2099
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2100..2165
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2166..2326
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2327..2526
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2527..2620
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2621..2717
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2718..3300
                     /gene="Zc3h18"
                     /gene_synonym="Nhn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggatgtgg ccgagagccc tgaactggag cctcactccc cggatgaaga gcagccggca
       61 ctttcagatg atgacattct gagggaaagt gggtctgaac aagatttgga tggagctggg
      121 gaaagggctt ctgatttgga ggaagaggaa aatgcaacta gagtacaaag ccaggaggag
      181 attcactcag atgaggaaga ccaagccagt gagcccaagt cccaggatca ggactcagag
      241 gctcatgagc tgagcagggg cccagcagga tccccatgcg aggaggggga tgatgctgag
      301 gaagatggga caagtgatct cagggacgaa gcctcctcag tgaccaggga actggatgag
      361 cacgagctag actatgatga ggaggtccct gaggaaccag ctcctgctgc ccaggaggag
      421 gaagctgaga aggctggggc cgaggaggag gaggaaaagg gagaaggggc tcctggagag
      481 gaagggaagc ctgatgttca aagtgtggga gaaaaagaac ccacagaagc tgccaaggag
      541 aagaagaaag aggatgacga tggagagatc gacgacgggg agatagatga tgacgacctg
      601 gaggaaggcg aagtgaagga ccccagtgac cggaaggtga ggccacgccc cacctgccga
      661 ttcttcatga aagatgttgt gacaccatta tccactcttc ttccaccaat accaaattcc
      721 ataccactca gaggccaggt taaaggaaac tgcacgtggg gaatgaactg taggtttata
      781 caccctggag tgaatgacaa ggggaactac tccctcatca ccaaagcgga accctttcca
      841 cccaacggtg ccccgcctct tggacctcac ccactgatgc ctgccaaccc ttggggtggg
      901 ccagtagttg atgaaatttt gcctccaccc cctccagagc ccccaacaga gagtgcctgg
      961 gaacgtggac tcagacatgc aaaagaggtt ttaaaaaaag caaccattcg gaaagagcag
     1021 gagcctgact ttgaagaaaa aaggttcaca gtaaccattg gtgaagacga ccgggaattt
     1081 gacaaggaaa atgaagtctt ccgagattgg aattctcggg tcccacgaga tgtcagagac
     1141 acaacacttg agccttatgc agatccttat tatgactatg agatagagcg tttttggcgt
     1201 ggtggacagt acgagaattt cagggtgcag tatacagaag cagagccgta tcataactac
     1261 cgcgaccgag agagggagcg agagcgagag aacagacaac gggaacggga acgcgaccga
     1321 gagcgtgacc gagagcgcga gcgcaggcag agagagcgcg agcgggaacg ggagcgggaa
     1381 cgggacaagg agcggcagcg gaggaaagag gagtgggaga gagagagagc caagcgagat
     1441 gagaaggacc ggcaacaccg agaccgagac agggacaagg accgggacaa ggacaaggag
     1501 aagccgaagc cccggtcccc acagccaccg agccgtcaag ctgaaccacc aaagaaggag
     1561 accgcctctg tggggccaca ggtgaagcga gccgatgagt ggaaggaccc gtggcgccga
     1621 tccaagtctc ccaagaagaa acttggtgtg tcagtctccc caagccgggc acgaaggcgt
     1681 cgcaagacat ccgcctcatc agcttctgct tccaattcct ccaggtcatc gtcacggtct
     1741 tcatcctact ctggctctgg ctcgtcccgg tcccggtccc ggtcctcctc ctatagctcc
     1801 tactccagcc gctcttccag acgcagttcc ttctcaggca gccggtccag gtcccggtcc
     1861 ttctcctcgt ccccatcccc atctcccaca ccttccccac acagacctcc agtcagaacc
     1921 aagggggagc cggccccgcc tcccgggaaa gcaggggaga agtcaataaa gaagccagcc
     1981 ccgcccccag ccccaccaca ggccaccaaa actactgcac ctgctcctga gcctgccaag
     2041 cctggagatc tccgagaagc caggagaaag gaacggcaaa ccaggactcc cccaaggagg
     2101 cggacgctca gcggcagtgg cagcggcagt ggtagcagct acagtggctc cagttcccga
     2161 tccaggtctc tgagtgtgag cagcgtttcc tcggtgtcca gtgccacctc gagtagcagc
     2221 tcagtgcaca gtgtggactc agatgacatg tatgcagacc tggccagtcc tgtgtcatca
     2281 gccagctctc gatcccctac cccagcacag accaagaagg agagagggaa atctaagaaa
     2341 gaagacggag tgagagagga gaagcggaaa cgggacccat ccgcacagcc acccaagtcc
     2401 tccaaagccc ccgcaggtgg gaaggcctcc cagcaggcag cggcacctca gcaggcggcc
     2461 cctgggcagc cccaacaggg ctcctttgtc gctcacaagg agataaagct gacattgctg
     2521 aacaaggcgg ctgagaaagg aagccggaag cgctatgagc cctcagacaa ggaccggcag
     2581 agccctcctg ccaagaaggc caacttgtcc ccagaccgag gttctcgaga ccggaaatcg
     2641 ggtggaagaa tgggctcccc gaaaccagag aggcagaggg gccagaatgc taaagctcct
     2701 gctgccccag cggacaggaa gcgcccactg tcgccccagt ctaagagctc cagcaaggtc
     2761 accagtgtgc ccggcaaagc cacagacact gccacagcag gcactaagtc agggaaggcc
     2821 agcacattgt cccggcgaga ggagctcctt aaacagctca aggccgttga ggatgccatc
     2881 gctcgcaagc gggccaagat tcccgggaaa gtgtagtggg cccagctcac tccctggagt
     2941 agactcttca atgtttttat aaaaataggg taagcgcggc cattttggat tttccagcca
     3001 atgtcttatt ttggctgtga ttctttttaa aaattaaaaa agaaaaaaaa agtttctcag
     3061 ctggaaaaga agccacacac aagatgaaga tgacgctgag tcccaacctc cccaccagac
     3121 tgaaccagct ccttccagaa tagtctccac ggacagatgg acagatcagc actgagcagg
     3181 gagcaccaac tctctgtaac ttaagagctg cgggcacacg ggctggactc acccttctgc
     3241 ctcgtttctc cagggggcct cctgggctgc aattttcagc agtctcctct ctagggacag
//
